Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373497.1

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Forward (+)

628 .. 1074

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373497.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggtaattgttttccacagcactttgctagtaaattcggctgggcacacatgggggtatcaagcatggaacaccggtgatctatctaagaacctttggtggttaggattgcttggactaggagaaggatggcacaacaaccaccacgctttcgaatactcggctcgacaaggcctcgaatggtggcagattgacatgacttggtacgtcataagatttcttgaagctctagggttggcaaaagatgtgaaactaccatctgaagctcacaagaaacgcaaagctttagagaccagaacaaccgtcgcttctcatgaaataagctacgaagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

111

Amino Acids

12.87

Weight (kDa)

6.36

Isoelectric Point (pI)

22.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	206
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	4 cut(s)	227, 266, 284, 324
AluI	AGCT	4 cut(s)	227, 266, 284, 324
Alw26I	GTCTC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	34
AsiGI	ACCGGT	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	48
BccI	CCATC	2 cut(s)	123, 265
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	3 cut(s)	29, 119, 230
Bpu14I	TTCGAA	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	74
BseGI	GGATG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	174
BshTI	ACCGGT	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	174
Bso31I	GGTCTC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	79
BspANI	GGCC	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	205
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	4 cut(s)	51, 66, 196, 314
CviJI	RGCY	7 cut(s)	41, 164, 174, 227, 266, 284, 324
CviKI_1	RGCY	7 cut(s)	41, 164, 174, 227, 266, 284, 324
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	282
FaeI	CATG	4 cut(s)	54, 69, 199, 317
FaiI	YATR	5 cut(s)	52, 67, 197, 212, 315
FatI	CATG	4 cut(s)	50, 65, 195, 313
FokI	GGATG	1 cut(s)	141
FspBI	CTAG	3 cut(s)	29, 119, 230
GsaI	CCCAGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	4 cut(s)	54, 69, 199, 317
HindIII	AAGCTT	1 cut(s)	282
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	221, 314
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	54, 69, 199, 317
Kzo9I	GATC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	27, 88, 307
MaeI	CTAG	3 cut(s)	29, 119, 230
MaeII	ACGT	1 cut(s)	207
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	2 cut(s)	6, 34
MnlI	CCTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	334
MspI	CCGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	4 cut(s)	54, 69, 199, 317
NmeAIII	GCCGAG	1 cut(s)	140
NspV	TTCGAA	1 cut(s)	153
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	334
Sau3AI	GATC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	96, 210, 229, 268, 286, 326
SfuI	TTCGAA	1 cut(s)	153
SgrAI	CRCCGGYG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	6, 34
SseBI	AGGCCT	1 cut(s)	174
SspMI	CTAG	3 cut(s)	29, 119, 230
StuI	AGGCCT	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	3 cut(s)	153, 166, 177
TasI	AATT	2 cut(s)	6, 34
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	330
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	3 cut(s)	29, 119, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.