Rh2DG024600

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007539
Physical Location & Seq
Reverse (-)
1463136 .. 1463936
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG024600.1

Sequence Viewer

Length: 387 bp
ATGGGATGGATTCTCGACAGCAATAAGCGCTTCGGAAAATATGGAGGACTGAAGAATGTTGAAGATTTGAAAATGCAGCCATTCTATAGGTTTCTTCATCATACGTTTCTTCTACACTCGTTTATTCTTGGAGGAATTCTATATGCCCTTGGTGGGTTTCCCTTCATTGTTTGGGAAATGGGAGTGAGGATGCTAGTTGTTTTCCACGGCACCATGCTAGTAAATTCGGCCTGCCACACATGGGGGTATCAAGCATGGAATACCGGTGATCTATCTAACCTTTGGTGGTTGGGACTTGGGAGTGCTTGGATTAGGAGAAGGATGGCACAACAATCACCACGCTTTCGAATACTCGGCTCGACTAGGCCTCGAATGGTGGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

128

Amino Acids

14.85

Weight (kDa)

10.42

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AcsI RAATTY 2 cut(s) 135, 223
AcuI CTGAAG 1 cut(s) 71
AfeI AGCGCT 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 153, 241
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 62, 70
Aor51HI AGCGCT 1 cut(s) 29
AoxI GGCC 2 cut(s) 228, 365
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 2 cut(s) 135, 223
AsiGI ACCGGT 1 cut(s) 263
AspLEI GCGC 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 278, 327
AsuII TTCGAA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 223
BfaI CTAG 3 cut(s) 194, 218, 363
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 31
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 148, 205
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 241
Bse118I RCCGGY 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 148, 205
BseGI GGATG 3 cut(s) 11, 195, 327
BseLI CCNNNNNNNGG 2 cut(s) 153, 241
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 2 cut(s) 230, 367
BshNI GGYRCC 1 cut(s) 209
BshTI ACCGGT 1 cut(s) 263
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 153, 241
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 2 cut(s) 230, 367
Bsp119I TTCGAA 1 cut(s) 346
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 2 cut(s) 230, 367
BspLI GGNNCC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 148, 205
BssMI GATC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 232
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 3 cut(s) 11, 195, 327
BstH2I RGCGCY 1 cut(s) 31
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 230, 367
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 3 cut(s) 11, 195, 327
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 263
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 3 cut(s) 214, 240, 255
CviJI RGCY 4 cut(s) 79, 230, 357, 367
CviKI_1 RGCY 4 cut(s) 79, 230, 357, 367
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 367
Eco47III AGCGCT 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 3 cut(s) 217, 243, 258
FaiI YATR 8 cut(s) 42, 87, 102, 142, 144, 215, 241, 256
FaqI GGGAC 1 cut(s) 306
FatI CATG 3 cut(s) 213, 239, 254
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 3 cut(s) 18, 202, 334
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 3 cut(s) 194, 218, 363
GlaI GCGC 1 cut(s) 29
GluI GCNGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 31
HaeIII GGCC 2 cut(s) 230, 367
HapII CCGG 1 cut(s) 264
HhaI GCGC 1 cut(s) 30
Hin1II CATG 3 cut(s) 217, 243, 258
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 278, 327
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 172, 312
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 3 cut(s) 217, 243, 258
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 2 cut(s) 244, 277
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 1 cut(s) 180
MaeI CTAG 3 cut(s) 194, 218, 363
MaeII ACGT 1 cut(s) 104
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 4 cut(s) 64, 74, 86, 101
MluCI AATT 2 cut(s) 135, 223
MnlI CCTC 4 cut(s) 38, 125, 180, 378
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 217, 243, 258
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 333
NspV TTCGAA 1 cut(s) 346
PceI AGGCCT 1 cut(s) 367
PfeI GAWTC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 211
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 268
SetI ASST 3 cut(s) 92, 107, 282
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 346
Sse9I AATT 2 cut(s) 135, 223
SseBI AGGCCT 1 cut(s) 367
SspMI CTAG 3 cut(s) 194, 218, 363
StuI AGGCCT 1 cut(s) 367
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 107
TaqI TCGA 4 cut(s) 15, 346, 359, 370
TasI AATT 2 cut(s) 135, 223
TfiI GAWTC 1 cut(s) 10
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 86, 154
XapI RAATTY 2 cut(s) 135, 223
XspI CTAG 3 cut(s) 194, 218, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.