Rroxscaffold_4G00310510

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007539
Physical Location & Seq
Reverse (-)
32518944 .. 32527815
8872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310510.1

Sequence Viewer

Length: 336 bp
ATGCTTGACCACAAGTCCACAACAAATGATAGGCAAGAAATTCACCTCGTGTCATCAAAAAAAAGAAATTCAACTCGTCAAATGCAATTGAGGCAAATGCTTAGTAATGGTGCGTTCATCTTGCTTAAGTTGATTGGATTGCTGGCATTCGGAGAAGGCTGGCACAATAATCACCATGCTTTTGAGTACTCGGCTCGACGGGGCTTGGAACGGTGGGAAATTGATACTAGTTGGTATGTGATTAAGTTTCTTCAAGTTGTGGGTTTGGCCACGGACGTGAAACCGCCAACCGAGATTCGGAAGAAACGAAAAGCTCGGCAAAAAATTCGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

111

Amino Acids

13.06

Weight (kDa)

10.6

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 39, 67, 324
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 297
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 72, 254
AhdI GACNNNNNGTC 1 cut(s) 13
AhlI ACTAGT 1 cut(s) 227
AjiI CACGTC 1 cut(s) 277
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AoxI GGCC 1 cut(s) 267
ApoI RAATTY 3 cut(s) 39, 67, 324
AsuHPI GGTGA 2 cut(s) 35, 164
BalI TGGCCA 1 cut(s) 269
BauI CACGAG 1 cut(s) 47
BcgI CGANNNNNNTGC 1 cut(s) 308
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 125
BmcAI AGTACT 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 297
BshFI GGCC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 269
BspHI TCATGA 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 329
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 213
BstAFI CTTAAG 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 144, 161
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 270
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 144, 161
CciI TCATGA 1 cut(s) 332
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 176, 333
CviJI RGCY 5 cut(s) 159, 194, 204, 269, 314
CviKI_1 RGCY 5 cut(s) 159, 194, 204, 269, 314
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraIII CACNNNGTG 1 cut(s) 49
DriI GACNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 267
Eam1105I GACNNNNNGTC 1 cut(s) 13
FaeI CATG 2 cut(s) 179, 336
FaiI YATR 3 cut(s) 177, 237, 334
FatI CATG 2 cut(s) 175, 332
FspBI CTAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 269
Hin1II CATG 2 cut(s) 179, 336
HinfI GANTC 1 cut(s) 295
HphI GGTGA 2 cut(s) 35, 164
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 152, 300
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 179, 336
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 2 cut(s) 128, 145
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 276
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 242, 313
MfeI CAATTG 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 5 cut(s) 39, 67, 86, 219, 324
MluNI TGGCCA 1 cut(s) 269
MnlI CCTC 2 cut(s) 56, 84
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 126, 243
MslI CAYNNNNRTG 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 125
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 91
NdeII GATC 1 cut(s) 329
NlaIII CATG 2 cut(s) 179, 336
NmeAIII GCCGAG 2 cut(s) 170, 295
OliI CACNNNNGTG 1 cut(s) 275
PagI TCATGA 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PctI GAATGC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 295
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 2 cut(s) 126, 243
Sau3AI GATC 1 cut(s) 329
ScaI AGTACT 1 cut(s) 188
SetI ASST 3 cut(s) 48, 279, 316
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 5 cut(s) 39, 67, 86, 219, 324
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 196, 328
TasI AATT 5 cut(s) 39, 67, 86, 219, 324
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 126, 243
Tru9I TTAA 2 cut(s) 126, 243
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 125
XapI RAATTY 3 cut(s) 39, 67, 324
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.