Rh7BG295000

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007539
Physical Location & Seq
Reverse (-)
27720499 .. 27730732
10234 bp
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UTR
Exon/CDS
Intron
Rh7BG295000.1

Sequence Viewer

Length: 657 bp
ATGCTAGATATAAGCAGAAAATTAACAGCAAAAAGATTGATTAGTAGAAACTATGGAATCCTGGAACCAAAATATATATATGCCAATAATGGACAACTGAAGAATATATATGTTGAGCTTACAAATTCTAATTTCTTTTTGCAGTATGAACCACGACTAAAGAATGTTGGAGATTTGAAAGGACAACCGTACTATATGTTTCTCCATTATACATACCCTCTTCATTATATAGCTCTCGGAGTTCTATTACATTTTCTGGGAGGAATGCCCTTTTTGGTTTGGGGAATGGGAGTGAGGACGGTACTTTTTCTCCATGCTACATTTGGAATAAATTCAATCTGCCATACATGGGGACAACAAATATGGGAAACAGGTGATTTATCTAGAAACAATTGGTTGATTGGATTGCTGGCACTTGGAGAAGGTTGGCATAATAATCACCATGCTTTTCAGCACTCAGCTCGACACGGCTTGGAATGGTGGCAAATTGATGTTACTTGGTATGTCATAAGATTTCTTGAACTTGTGGGTTTGGCAACAGAAGTGAAGCTTCCAACTGAGACTCAGAAGAAACAAAGAGCTTTAAGCAATAACAAGATGATCCACGAGGAAAAGCAGCAGCAGCTTGAAGCAAAAGTCCAAAATGGCAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

218

Amino Acids

25.45

Weight (kDa)

9.23

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 74 - 164 1.5e-07 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 595
AcsI RAATTY 2 cut(s) 124, 331
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 2 cut(s) 191, 303
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 4 cut(s) 178, 336, 521, 629
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 6 cut(s) 118, 233, 461, 550, 581, 625
AluI AGCT 6 cut(s) 118, 233, 461, 550, 581, 625
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 616, 619, 622
ApoI RAATTY 2 cut(s) 124, 331
Asp700I GAANNNNTTC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 386, 431
BauI CACGAG 1 cut(s) 605
BbvI GCAGC 3 cut(s) 628, 631, 634
BceAI ACGGC 1 cut(s) 484
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BciT130I CCWGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 2 cut(s) 5, 384
BisI GCNGC 3 cut(s) 617, 620, 623
BlsI GCNGC 3 cut(s) 618, 621, 624
Bme1390I CCNGG 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 471, 549, 578
BseXI GCAGC 3 cut(s) 628, 631, 634
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 600
BspCNI CTCAG 3 cut(s) 470, 550, 577
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 595
BssMI GATC 1 cut(s) 600
BssSI CACGAG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 189, 301
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 457, 558, 564
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 1 cut(s) 622
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 628, 631, 634
Cac8I GCNNGC 1 cut(s) 411
Csp6I GTAC 2 cut(s) 190, 302
CviAII CATG 3 cut(s) 314, 348, 443
CviJI RGCY 7 cut(s) 118, 233, 461, 471, 550, 581, 625
CviKI_1 RGCY 7 cut(s) 118, 233, 461, 471, 550, 581, 625
CviQI GTAC 2 cut(s) 190, 302
DdeI CTNAG 3 cut(s) 457, 558, 564
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 3 cut(s) 317, 351, 446
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 366
FatI CATG 3 cut(s) 313, 347, 442
Fnu4HI GCNGC 3 cut(s) 617, 620, 623
Fsp4HI GCNGC 3 cut(s) 617, 620, 623
FspBI CTAG 2 cut(s) 5, 384
GluI GCNGC 3 cut(s) 617, 620, 623
Hin1II CATG 3 cut(s) 317, 351, 446
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 2 cut(s) 57, 562
HphI GGTGA 2 cut(s) 386, 431
Hpy188I TCNGA 2 cut(s) 239, 567
Hpy188III TCNNGA 2 cut(s) 384, 518
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 189, 301
HpyCH4V TGCA 1 cut(s) 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 622
HpyF3I CTNAG 3 cut(s) 457, 558, 564
Hsp92II CATG 3 cut(s) 317, 351, 446
Kzo9I GATC 1 cut(s) 600
LpnPI CCDG 5 cut(s) 47, 74, 242, 357, 395
Lsp1109I GCAGC 3 cut(s) 628, 631, 634
MaeI CTAG 2 cut(s) 5, 384
MaeIII GTNAC 1 cut(s) 493
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 3 cut(s) 112, 212, 580
MfeI CAATTG 1 cut(s) 391
MluCI AATT 6 cut(s) 20, 124, 130, 331, 391, 486
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 2 cut(s) 148, 578
MnlI CCTC 4 cut(s) 228, 254, 288, 601
MroXI GAANNNNTTC 1 cut(s) 331
MseI TTAA 2 cut(s) 23, 584
MspR9I CCNGG 1 cut(s) 62
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 622
NdeII GATC 1 cut(s) 600
NlaIII CATG 3 cut(s) 317, 351, 446
NlaIV GGNNCC 1 cut(s) 66
PctI GAATGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 3 cut(s) 618, 621, 624
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 66
RsaI GTAC 2 cut(s) 191, 303
RsaNI GTAC 2 cut(s) 190, 302
SaqAI TTAA 2 cut(s) 23, 584
SatI GCNGC 3 cut(s) 617, 620, 623
Sau3AI GATC 1 cut(s) 600
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 1 cut(s) 62
SetI ASST 9 cut(s) 120, 235, 376, 427, 463, 552, 583, 627, 654
Sse9I AATT 6 cut(s) 20, 124, 130, 331, 391, 486
SspMI CTAG 2 cut(s) 5, 384
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 189, 301
TaqI TCGA 1 cut(s) 463
TasI AATT 6 cut(s) 20, 124, 130, 331, 391, 486
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 2 cut(s) 23, 584
Tru9I TTAA 2 cut(s) 23, 584
TseI GCWGC 3 cut(s) 616, 619, 622
TspDTI ATGAA 2 cut(s) 162, 212
XapI RAATTY 2 cut(s) 124, 331
XbaI TCTAGA 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 331
XspI CTAG 2 cut(s) 5, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.