Rh2BG555100

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007539
Physical Location & Seq
Forward (+)
76411369 .. 76421565
10197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG555100.1

Sequence Viewer

Length: 411 bp
ATGGATTGGATTCTTGATGGCAACGCTCGTTTTGGAAGATATGGAGGACTGCGGAATGTTGAAGATTTGAAAAGGCAAGCATTCTATAGGTTTCTTCAAAATACTTACCTTTTACACTCAATTATTCTTGGAGGCATTTTATATGCAGTTGGTGGATTTCCGTTCATCGTTTGGGGAATGGGCGTGAGGATGGTATATGTTTTCCACGGCACATTGCTAGTGAATTCGGCCGGCCACATATGGGGATATCAAGCATGGAAGACCAGTGATCTGTCTAAGAATCTCTGGATTGGTCGAAATTGGTATATAGGTGAAGCTCTCGGCAGTCTGGGTTGCACCCGTTTGTGGAAGCTGATTGCACGGGTGCTTGCTGCAAGCTGGGCTGTTACTGCCAACTCTTCAACACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

136

Amino Acids

15.36

Weight (kDa)

9.93

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AcoI YGGCCR 2 cut(s) 228, 232
AcsI RAATTY 1 cut(s) 223
AfiI CCNNNNNNNGG 2 cut(s) 241, 345
AgsI TTSAA 4 cut(s) 62, 70, 98, 402
AluBI AGCT 3 cut(s) 317, 352, 378
AluI AGCT 3 cut(s) 317, 352, 378
AoxI GGCC 2 cut(s) 228, 232
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 11, 184
BceAI ACGGC 1 cut(s) 223
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 85
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 345
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 241, 345
BseMI GCAATG 1 cut(s) 212
BseNI ACTGG 1 cut(s) 264
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 230, 234
BsiEI CGRYCG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 241, 345
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 2 cut(s) 230, 234
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 1 cut(s) 52
BspANI GGCC 2 cut(s) 230, 234
BsrDI GCAATG 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 403
BstC8I GCNNGC 4 cut(s) 78, 232, 369, 376
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 380, 389
BstSFI CTRYAG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 266
BstZI CGGCCG 1 cut(s) 228
BsuRI GGCC 2 cut(s) 230, 234
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 4 cut(s) 78, 232, 369, 376
Cfr10I RCCGGY 1 cut(s) 230
CviAII CATG 1 cut(s) 255
CviJI RGCY 6 cut(s) 230, 234, 317, 352, 378, 383
CviKI_1 RGCY 6 cut(s) 230, 234, 317, 352, 378, 383
DdeI CTNAG 1 cut(s) 276
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EaeI YGGCCR 2 cut(s) 228, 232
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
EclXI CGGCCG 1 cut(s) 228
Eco32I GATATC 1 cut(s) 248
Eco52I CGGCCG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 223
EcoRV GATATC 1 cut(s) 248
FaeI CATG 1 cut(s) 258
FatI CATG 1 cut(s) 254
FauNDI CATATG 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 202
FseI GGCCGGCC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 382
HaeIII GGCC 2 cut(s) 230, 234
HapII CCGG 1 cut(s) 231
Hin1II CATG 1 cut(s) 258
HinfI GANTC 2 cut(s) 10, 280
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 410
Hpy188III TCNNGA 2 cut(s) 14, 286
HpyCH4V TGCA 4 cut(s) 146, 336, 359, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 389
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 258
KroI GCCGGC 1 cut(s) 230
KroNI GCCGGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 244, 271, 277, 314, 364
Lsp1109I GCAGC 1 cut(s) 358
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 48, 74, 86, 271, 390
MluCI AATT 3 cut(s) 120, 223, 298
MnlI CCTC 3 cut(s) 38, 125, 180
MroNI GCCGGC 1 cut(s) 230
MspI CCGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 380, 389
NaeI GCCGGC 1 cut(s) 232
NdeI CATATG 1 cut(s) 239
NdeII GATC 1 cut(s) 268
NgoMIV GCCGGC 1 cut(s) 230
NlaIII CATG 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 300
PctI GAATGC 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 10, 280
PkrI GCNGC 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 378
RigI GGCCGGCC 1 cut(s) 234
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 1 cut(s) 268
SetI ASST 6 cut(s) 92, 111, 313, 319, 354, 380
SfcI CTRYAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 120, 223, 298
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 218
TaqI TCGA 1 cut(s) 295
TasI AATT 3 cut(s) 120, 223, 298
TfiI GAWTC 2 cut(s) 10, 280
TscAI CASTG 1 cut(s) 271
TseI GCWGC 1 cut(s) 371
TspDTI ATGAA 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 271
XapI RAATTY 1 cut(s) 223
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.