Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007539

Physical Location & Seq

Genomic Coordinates Reverse (-)

13130676 .. 13132571

Gene Structure 1896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTGTGAGAACTGTATTTTTACTCCAGATTACTTTTTCAATAAACTCGATCTGCCACATATGGGGAAAGCAAGTATGGAATACTGGTGATTTGTCTAGAAACAACTGGTTGTTGGGGTTGCTAGCACTTGGCGAGGGTTGGCACAATAATCATCATGCATTTGAATACTCAGCTAGACAAGGCTTGGAATGGTGGGAGATTGACACTACTTGGTATATAATACGCTTCCTTGAAGCCATTGGTTTGGCTACAGACGTAAAACTCCCAACTGAAGCTCATAAAGAAACGAAAGGCTTTATGCAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016053 GO:0016491 GO:0019752 GO:0031984 GO:0032787 GO:0033559 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:0072330 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko01040 ko01212 ko03320 ko04152 ko04212 map01040 map01212 map03320 map04152 map04212

Pfam Domains

Protein Families

FA_desaturase

Protein Analysis

103

Amino Acids

12.0

Weight (kDa)

5.91

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_desaturase	PF00487	7 - 76	2.1e-07	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007539)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g16180
rosa_chinensis	RchiOBHm_Chr2g0158081 RchiOBHm_Chr2g0159461 RchiOBHm_Chr4g0425021
rosa_laevigata	RLG00000015820
rosa_multiflora	Rmu_co8373497.1_g000001 Rmu_sc0005982.1_g000015 Rmu_sc0033090.1_g000001 Rmu_ssc0000187.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056800 Rroxscaffold_2G00091620 Rroxscaffold_4G00310500 Rroxscaffold_4G00310510
rosa_rugosa	Rorug07G0052900
rosa_samantha	Rh1AG184500 Rh2BG024500 Rh2BG555100 Rh2DG024600 Rh5AG004400 Rh5BG005900 Rh5CG004800 Rh5DG004800 Rh7BG180000 Rh7BG295000
rosa_wichuraiana	Rw2G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	3 cut(s)	42, 167, 236
AluBI	AGCT	2 cut(s)	176, 278
AluI	AGCT	2 cut(s)	176, 278
AsuHPI	GGTGA	1 cut(s)	101
AsuNHI	GCTAGC	1 cut(s)	124
BfaI	CTAG	3 cut(s)	99, 125, 177
BfmI	CTRYAG	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	2 cut(s)	91, 113
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	91, 113
BslI	CCNNNNNNNGG	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	185
BspOI	GCTAGC	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	91, 113
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	172
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	126
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	6 cut(s)	176, 186, 239, 251, 278, 297
CviKI_1	RGCY	6 cut(s)	176, 186, 239, 251, 278, 297
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	163
FaeI	CATG	1 cut(s)	161
FaiI	YATR	8 cut(s)	62, 64, 79, 159, 219, 221, 282, 302
FatI	CATG	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	62
FspBI	CTAG	3 cut(s)	99, 125, 177
GsuI	CTGGAG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	101
Hpy188III	TCNNGA	2 cut(s)	28, 99
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	161, 304
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	3 cut(s)	41, 72, 94
MaeI	CTAG	3 cut(s)	99, 125, 177
MaeII	ACGT	1 cut(s)	258
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MnlI	CCTC	1 cut(s)	130
Mph1103I	ATGCAT	1 cut(s)	163
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	1 cut(s)	51
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	51
SetI	ASST	3 cut(s)	178, 261, 280
SfcI	CTRYAG	1 cut(s)	252
SspMI	CTAG	3 cut(s)	99, 125, 177
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	98
XspI	CTAG	3 cut(s)	99, 125, 177
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.