AT1G67180

Zinc finger (C3HC4-type RING finger) family protein BRCT domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004814
Physical Location & Seq
Forward (+)
25129647 .. 25132283
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67180.6

Sequence Viewer

Length: 1362 bp
ATGGAAAATGTGGTTGCAACTGTGAGTGGTTATCATGGATCCGATAGGTTTAAGCTCATCAAGCTTATTTCTCATTCTGGAGCAAGTTATGTTGGGGCAATGTCAAGATCTATTACACATTTGGTGTGTTGGAAATTTGAGGGCAAAAAGTACGATCTTGCAAAGAAGTTTGGTACAGTAGTAGTGAATCATCGATGGGTGGAAGAATGTGTAAAGGAAGGGAGAAGAGTTTCCGAGACGCCTTATATGTTTGATAGTGGAGAAGAGGTTGGACCTTTGATGATTGAACTACCTGCAGTTTCTGAGGAAGCTAAAGTCACTAAGAAAGTGAATAAGGCTTCTGAAACTTTTGATAAATACTTTAGTAATGGTGGAGAAAACCGGAGTGGCTCCACTTCTGAGCTTGCCACTTGGATGGAGAAAAATGTAGAAGCAAACAGACACTCAGTGCGATTAAGAACAAAGAGGCCGAGTAGTATTCTTGAAAACAAGGAAAACAGTGGTGTGGCAGAATCTTCACGGAAAGGAAAAAAGCGGGTAGTAAAGCAACGCTCTTACAGAAACCTTATCGACCTTGAATCTGATGAGGAATCTGATAATAACCATCATGACAACTCTGATGAGAACCAAAATGAGACTCAGGATCATAGAGAGCCTGCTGATGAAAATGTGAGGGGTTTTGTTTTCGAACAAGGAGAAACATCAGCTCTTCGACATCCTGGAGACTTGGCAACACCAAACTGGGATGTAGATGAAATAGAGGAGTCTGAGAATTGGAGTCATTCAGCTGTTTTTAAACGCCCTAGATCATTTAGTCCAGAGATAAAACCACAAGATGATGATGAGTCAACAAGAGAAGAGACAGAAGCAACTGAGAAGGCTCCTGCACAAGTTTCTTGTATCATATGCTGGACCGAGTTCAGTTCCAGTAGAGGCATTCTCCCTTGCGGCCACAGGTTTTGTTATTCATGCATCCAAAAATGGGCAGACCGTTTGGTTTCAGAAAGAAAGAAAACAACATGTCCACTGTGCAAGTCCAATTTCATCACAATCACAAAGATAGAAGACGCTGATTCTTCCGATCAAAAGATATACTCACAAACAGTCCCTGACTTATCTTCAACAAATAACATTCTTGTAGTACTCCCTGAAGAAGAAGAACAAAGACAAACTCTCAATCCACTGACTCGAGCTTCAGGTTGCAGCAGATGCTACTTGACTGAGCCAGAGGAGCTTCTGATAAGATGTCACCTCTGCAATTTCCGGCGAATCCACTCCTATTGTTTAGACCCTTATCTGCTTCCTTGGACCTGTAACCATTGCAATGATCTTCAGATGATGTACCACCGTCGCAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00590 ko04918 map00480 map00590 map04918
Pfam Domains
Protein Families
PTCB-BRCT zf-C3HC4 zf-RING_2

Protein Analysis

453

Amino Acids

51.93

Weight (kDa)

5.83

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRCT PF00533 2 - 71 2.5e-09 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 4 - 66 4.6e-21 twin BRCT domain
zf-C3HC4_3 PF13920 298 - 348 4.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 299 - 345 3.6e-09 Ring finger domain
zf-C3HC4 PF00097 300 - 344 3.7e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 300 - 342 4.7e-07 RING-type zinc-finger
zf-C3HC4_2 PF13923 300 - 344 2.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 300 - 345 4.6e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AciI CCGC 2 cut(s) 535, 948
AclWI GGATC 3 cut(s) 33, 46, 651
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 3 cut(s) 1170, 1179, 1316
AcyI GRCGYC 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 4 cut(s) 152, 175, 1143, 1343
AfiI CCNNNNNNNGG 1 cut(s) 982
AflIII ACRYGT 1 cut(s) 1019
AgsI TTSAA 4 cut(s) 287, 485, 578, 1122
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 8 cut(s) 55, 64, 311, 403, 707, 788, 1193, 1234
AluI AGCT 8 cut(s) 55, 64, 311, 403, 707, 788, 1193, 1234
Alw26I GTCTC 4 cut(s) 230, 629, 717, 854
AlwI GGATC 3 cut(s) 33, 46, 651
AlwNI CAGNNNCTG 2 cut(s) 302, 1109
Ama87I CYCGRG 1 cut(s) 1188
AoxI GGCC 2 cut(s) 467, 949
ApeKI GCWGC 1 cut(s) 1203
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 3 cut(s) 272, 912, 1308
AsuHPI GGTGA 1 cut(s) 1241
AsuII TTCGAA 1 cut(s) 687
AvaI CYCGRG 1 cut(s) 1188
AvaII GGWCC 3 cut(s) 272, 912, 1308
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BamHI GGATCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 1071
BbvI GCAGC 1 cut(s) 1215
BccI CCATC 3 cut(s) 189, 409, 612
BciT130I CCWGG 1 cut(s) 720
BcoDI GTCTC 4 cut(s) 230, 629, 717, 854
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 301
BglII AGATCT 1 cut(s) 107
BisI GCNGC 2 cut(s) 949, 1204
BlsI GCNGC 2 cut(s) 950, 1205
BmcAI AGTACT 1 cut(s) 1143
Bme1390I CCNGG 1 cut(s) 720
Bme18I GGWCC 3 cut(s) 272, 912, 1308
BmeT110I CYCGRG 1 cut(s) 1188
BmgT120I GGNCC 3 cut(s) 272, 912, 1308
BmiI GGNNCC 3 cut(s) 40, 391, 882
BmrFI CCNGG 1 cut(s) 720
BmrI ACTGGG 1 cut(s) 751
BmsI GCATC 2 cut(s) 981, 1199
BmuI ACTGGG 1 cut(s) 751
BpiI GAAGAC 1 cut(s) 1071
BplI GAGNNNNNCTC 2 cut(s) 924, 956
BpmI CTGGAG 2 cut(s) 99, 741
Bpu14I TTCGAA 1 cut(s) 687
Bsa29I ATCGAT 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 1304
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 982
Bse1I ACTGG 2 cut(s) 746, 927
Bse3DI GCAATG 3 cut(s) 105, 1318, 1330
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 1304
BseGI GGATG 4 cut(s) 420, 715, 751, 972
BseLI CCNNNNNNNGG 1 cut(s) 982
BseMI GCAATG 3 cut(s) 105, 1318, 1330
BseMII CTCAG 7 cut(s) 294, 390, 459, 653, 759, 864, 1212
BseNI ACTGG 2 cut(s) 746, 927
BseRI GAGGAG 2 cut(s) 776, 1244
BseXI GCAGC 1 cut(s) 1215
BsgI GTGCAG 1 cut(s) 870
BshFI GGCC 2 cut(s) 469, 951
BshVI ATCGAT 1 cut(s) 193
BsiHKCI CYCGRG 1 cut(s) 1188
BsiSI CCGG 2 cut(s) 382, 1264
BslFI GGGAC 1 cut(s) 1091
BslI CCNNNNNNNGG 1 cut(s) 982
BsmAI GTCTC 4 cut(s) 230, 629, 717, 854
BsmBI CGTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 1091
BsmI GAATGC 1 cut(s) 936
BsnI GGCC 2 cut(s) 469, 951
BsoBI CYCGRG 1 cut(s) 1188
Bsp119I TTCGAA 1 cut(s) 687
Bsp143I GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
BspACI CCGC 2 cut(s) 535, 948
BspANI GGCC 2 cut(s) 469, 951
BspCNI CTCAG 7 cut(s) 295, 391, 458, 652, 760, 865, 1213
BspDI ATCGAT 1 cut(s) 193
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 3 cut(s) 40, 391, 882
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 3 cut(s) 33, 46, 651
BspQI GCTCTTC 1 cut(s) 714
BspT104I TTCGAA 1 cut(s) 687
BsrDI GCAATG 3 cut(s) 105, 1318, 1330
BsrI ACTGG 2 cut(s) 746, 927
BssECI CCNNGG 1 cut(s) 1304
BssMI GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 1304
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 7 cut(s) 22, 178, 500, 992, 1029, 1105, 1349
Bst6I CTCTTC 4 cut(s) 220, 258, 714, 852
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 1209
BstBI TTCGAA 1 cut(s) 687
BstC8I GCNNGC 2 cut(s) 405, 657
BstDEI CTNAG 8 cut(s) 303, 321, 399, 445, 639, 768, 873, 1221
BstF5I GGATG 4 cut(s) 420, 715, 751, 972
BstKTI GATC 7 cut(s) 41, 110, 157, 646, 809, 1084, 1330
BstMAI GTCTC 4 cut(s) 230, 629, 717, 854
BstMBI GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
BstMWI GCNNNNNNNGC 3 cut(s) 61, 1209, 1231
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 1 cut(s) 1023
BstSCI CCNGG 1 cut(s) 718
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 1215
BstV2I GAAGAC 1 cut(s) 1071
BstX2I RGATCY 2 cut(s) 38, 107
BstXI CCANNNNNNTGG 1 cut(s) 415
BstYI RGATCY 2 cut(s) 38, 107
Bsu15I ATCGAT 1 cut(s) 193
BsuRI GGCC 2 cut(s) 469, 951
BsuTUI ATCGAT 1 cut(s) 193
BtsCI GGATG 4 cut(s) 420, 715, 751, 972
BtsIMutI CAGTG 4 cut(s) 453, 505, 1025, 1181
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 405, 657
CaiI CAGNNNCTG 2 cut(s) 302, 1109
CciI TCATGA 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 272, 912, 1308
ClaI ATCGAT 1 cut(s) 193
CseI GACGC 2 cut(s) 247, 1076
Csp6I GTAC 4 cut(s) 151, 174, 1142, 1342
CspCI CAANNNNNGTGG 4 cut(s) 941, 976, 1262, 1297
CviAII CATG 4 cut(s) 35, 608, 969, 1020
CviQI GTAC 4 cut(s) 151, 174, 1142, 1342
DdeI CTNAG 8 cut(s) 303, 321, 399, 445, 639, 768, 873, 1221
DpnI GATC 7 cut(s) 40, 109, 156, 645, 808, 1083, 1329
DpnII GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
DraI TTTAAA 1 cut(s) 796
DraIII CACNNNGTG 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 4 cut(s) 220, 258, 714, 852
EarI CTCTTC 4 cut(s) 220, 258, 714, 852
Eco130I CCWWGG 1 cut(s) 1304
Eco47I GGWCC 3 cut(s) 272, 912, 1308
Eco57I CTGAAG 3 cut(s) 1170, 1179, 1316
Eco88I CYCGRG 1 cut(s) 1188
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 1 cut(s) 1304
EcoT22I ATGCAT 1 cut(s) 974
ErhI CCWWGG 1 cut(s) 1304
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 4 cut(s) 38, 611, 972, 1023
FaqI GGGAC 1 cut(s) 1091
FatI CATG 4 cut(s) 34, 607, 968, 1019
FauI CCCGC 1 cut(s) 528
FauNDI CATATG 1 cut(s) 905
Fnu4HI GCNGC 2 cut(s) 949, 1204
FokI GGATG 4 cut(s) 427, 702, 758, 959
Fsp4HI GCNGC 2 cut(s) 949, 1204
FspBI CTAG 1 cut(s) 804
GluI GCNGC 2 cut(s) 949, 1204
GsuI CTGGAG 2 cut(s) 99, 741
HaeIII GGCC 2 cut(s) 469, 951
HapII CCGG 2 cut(s) 382, 1264
HgaI GACGC 2 cut(s) 247, 1076
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 4 cut(s) 38, 611, 972, 1023
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HindIII AAGCTT 1 cut(s) 62
HpaII CCGG 2 cut(s) 382, 1264
HphI GGTGA 1 cut(s) 1241
Hpy166II GTNNAC 2 cut(s) 849, 1025
Hpy188III TCNNGA 6 cut(s) 78, 105, 482, 608, 641, 818
Hpy8I GTNNAC 2 cut(s) 849, 1025
Hpy99I CGWCG 1 cut(s) 1353
HpyAV CCTTC 2 cut(s) 212, 871
HpyCH4III ACNGT 7 cut(s) 22, 178, 500, 992, 1029, 1105, 1349
HpyCH4V TGCA 9 cut(s) 17, 161, 296, 887, 972, 1032, 1203, 1257, 1323
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 1209, 1231
HpyF3I CTNAG 8 cut(s) 303, 321, 399, 445, 639, 768, 873, 1221
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 4 cut(s) 38, 611, 972, 1023
Kzo9I GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 4 cut(s) 80, 395, 886, 1231
Lsp1109I GCAGC 1 cut(s) 1215
LweI GCATC 2 cut(s) 981, 1199
MaeI CTAG 1 cut(s) 804
MaeIII GTNAC 3 cut(s) 316, 1247, 1313
MalI GATC 7 cut(s) 40, 109, 156, 645, 808, 1083, 1329
MboI GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
MflI RGATCY 2 cut(s) 38, 107
MluCI AATT 4 cut(s) 134, 772, 1039, 1258
MlyI GAGTC 5 cut(s) 631, 773, 787, 854, 1180
MmeI TCCRAC 2 cut(s) 110, 250
Mph1103I ATGCAT 1 cut(s) 974
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 3 cut(s) 51, 455, 795
MslI CAYNNNNRTG 2 cut(s) 413, 1323
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 2 cut(s) 382, 1264
MspR9I CCNGG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 936
MvaI CCWGG 1 cut(s) 720
MwoI GCNNNNNNNGC 3 cut(s) 61, 1209, 1231
NdeI CATATG 1 cut(s) 905
NdeII GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
NlaIII CATG 4 cut(s) 38, 611, 972, 1023
NlaIV GGNNCC 3 cut(s) 40, 391, 882
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 316, 1247
NsiI ATGCAT 1 cut(s) 974
NspI RCATGY 1 cut(s) 1023
NspV TTCGAA 1 cut(s) 687
PaeR7I CTCGAG 1 cut(s) 1188
PagI TCATGA 1 cut(s) 607
PciI ACATGT 1 cut(s) 1019
PciSI GCTCTTC 1 cut(s) 714
PctI GAATGC 1 cut(s) 936
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 6 cut(s) 187, 512, 578, 590, 1073, 1269
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 2 cut(s) 950, 1205
PleI GAGTC 5 cut(s) 631, 772, 786, 853, 1180
PpsI GAGTC 5 cut(s) 631, 772, 786, 853, 1180
PscI ACATGT 1 cut(s) 1019
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 3 cut(s) 40, 391, 882
PspPI GGNCC 3 cut(s) 272, 912, 1308
PspXI VCTCGAGB 1 cut(s) 1188
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 302, 1109
PsuI RGATCY 2 cut(s) 38, 107
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 4 cut(s) 152, 175, 1143, 1343
RsaNI GTAC 4 cut(s) 151, 174, 1142, 1342
RseI CAYNNNNRTG 2 cut(s) 413, 1323
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 51, 455, 795
SatI GCNGC 2 cut(s) 949, 1204
Sau3AI GATC 7 cut(s) 38, 107, 154, 643, 806, 1081, 1327
Sau96I GGNCC 3 cut(s) 272, 912, 1308
ScaI AGTACT 1 cut(s) 1143
SchI GAGTC 5 cut(s) 631, 773, 787, 854, 1180
ScrFI CCNGG 1 cut(s) 720
SfaNI GCATC 2 cut(s) 981, 1199
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 1188
SfuI TTCGAA 1 cut(s) 687
SinI GGWCC 3 cut(s) 272, 912, 1308
SlaI CTCGAG 1 cut(s) 1188
SmiMI CAYNNNNRTG 2 cut(s) 413, 1323
SmlI CTYRAG 1 cut(s) 1188
SmoI CTYRAG 1 cut(s) 1188
Sse9I AATT 4 cut(s) 134, 772, 1039, 1258
SsiI CCGC 2 cut(s) 535, 948
SspMI CTAG 1 cut(s) 804
StyD4I CCNGG 1 cut(s) 718
StyI CCWWGG 1 cut(s) 1304
TaaI ACNGT 7 cut(s) 22, 178, 500, 992, 1029, 1105, 1349
TaqI TCGA 5 cut(s) 193, 570, 687, 712, 1189
TaqII GACCGA 1 cut(s) 929
TasI AATT 4 cut(s) 134, 772, 1039, 1258
TatI WGTACW 1 cut(s) 1141
TauI GCSGC 1 cut(s) 951
TfiI GAWTC 6 cut(s) 187, 512, 578, 590, 1073, 1269
Tru1I TTAA 3 cut(s) 51, 455, 795
Tru9I TTAA 3 cut(s) 51, 455, 795
TscAI CASTG 4 cut(s) 453, 505, 1032, 1188
TseFI GTSAC 2 cut(s) 316, 1247
TseI GCWGC 1 cut(s) 1203
Tsp45I GTSAC 2 cut(s) 316, 1247
TspDTI ATGAA 4 cut(s) 678, 768, 957, 1033
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 4 cut(s) 453, 505, 1032, 1188
VpaK11BI GGWCC 3 cut(s) 272, 912, 1308
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 1023
XhoI CTCGAG 1 cut(s) 1188
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 1 cut(s) 804
ZrmI AGTACT 1 cut(s) 1143
Zsp2I ATGCAT 1 cut(s) 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.