AT1G67660

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014008
Physical Location & Seq
Forward (+)
25363502 .. 25365314
1813 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67660.1

Sequence Viewer

Length: 1068 bp
ATGATGATGAGGCTAGTTCAAGTATCTTCCACTGAATCCATTTCTTCTATTTCCGCTTCCTCGGCCCGGAATGGTGGAGTTCTCTACTTGAAGCGTGGTTCTGTCTGTGTATGTAGAGTCTTGAAGCCGAATAAAGTTGCTCTCAACAGTATGATTCTTTCAGCTATGAGGACTTGCTCAATCTCTGGGTTCCATACTCATCTTCCGAAGTCAAGCGGTTCAGTTTCTTCGAGAAAGAGGTTTTCTTCTACTGCTTTATCACTCATCACTCAAACCATTTCACCATTTGCTCATCCCCGTTCATCAGTAATTGTGTCAAGCCTTCTCTCCCCATCTGATATCCCTCAGAAATCTGAAGAATGGTTTGCTTTAAGGAAAGACAAGTTAACCACAAGTACATTCAGTACAGCGCTGGGGTTTTGGAAAGGAAACCGGCGTGCCGAGCTCTGGCATGAAAAGGTTTATGATTCAGATGCACGAGTTGTTGAGGAGTCTGCACGGTTTGCTATGAACTGGGGTGTACAAATGGAATCATCTGCGATAGAAAGGTACAAAAGAATAATGGGTTGTGAGGTTGGAACAATGGGATTTGCTATTCACTCCAATGAGGAATTTCACTGGCTTGGCGCTTCACCGGATGGAATCCTCGATTGCTTTGGTATTCTAGAAGTGAAATGTCCATATAACAAAGGGAAAACCGAAACTGTATTACCCTGGAAAAAAGTGCCCTACTATTACATGCCTCAGCTGCAGGGTCAAATGGAGATAATGGACCGGGAATGGGTCAACTTATACTGCTGGACACGAAATGGAAGCACGGTTTTCCGTGTGATGAGAGACCGAAGCTATTGGAGAATCATACATGATGTATTAAGGGAGTTCTGGTGGGAGAGTGTGATTCCTGCAAGGGAGGCTTTGTTGTTAGGGAAAGAGGATGAGGAGGTGAAAAAGTATGAGCCAACATCTACGCATAAACGAACCAAGCTTGCCATAGCTAAAAGCCTAAATTTGGCTGCGGAATCAAAACTAGTATGCAGAGAAATTGCTGATCATGTCGAGTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
YqaJ

Protein Analysis

355

Amino Acids

40.46

Weight (kDa)

9.24

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 120 - 257 6.4e-24 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67660 AT1G67660
fragaria_vesca FvH4_4g24601
malus_domestica MD13G1109900.v1.1
prunus_persica Prupe.1G235100_v2.0.a1 Prupe.1G235100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431611
rosa_laevigata RLG00000006904
rosa_multiflora Rmu_sc0031555.1_g000001
rosa_roxburghii Rroxscaffold_5G00373070
rosa_rugosa Rorug04G0251200 Rorug04G0251300
rosa_samantha Rh4AG308100 Rh4BG315700 Rh4CG331200 Rh4DG310500
rosa_wichuraiana Rw4G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 54, 216, 1016
AcsI RAATTY 2 cut(s) 611, 1006
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 4 cut(s) 397, 406, 522, 551
AfeI AGCGCT 1 cut(s) 411
AfiI CCNNNNNNNGG 4 cut(s) 66, 447, 781, 1009
AgsI TTSAA 3 cut(s) 20, 91, 124
AhlI ACTAGT 1 cut(s) 1027
AjnI CCWGG 1 cut(s) 713
AluBI AGCT 6 cut(s) 164, 445, 748, 846, 985, 995
AluI AGCT 6 cut(s) 164, 445, 748, 846, 985, 995
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 831
Aor51HI AGCGCT 1 cut(s) 411
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 2 cut(s) 748, 1013
ApoI RAATTY 2 cut(s) 611, 1006
AspLEI GCGC 2 cut(s) 412, 629
AspS9I GGNCC 2 cut(s) 64, 772
AsuC2I CCSGG 2 cut(s) 67, 776
AsuHPI GGTGA 3 cut(s) 273, 624, 955
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 735, 1000
BccI CCATC 2 cut(s) 340, 632
BciT130I CCWGG 1 cut(s) 715
BclI TGATCA 1 cut(s) 1048
BcnI CCSGG 2 cut(s) 67, 776
BcoDI GTCTC 1 cut(s) 831
BcuI ACTAGT 1 cut(s) 1027
BfaI CTAG 3 cut(s) 14, 665, 1028
BfmI CTRYAG 1 cut(s) 749
BfoI RGCGCY 2 cut(s) 413, 630
BisI GCNGC 2 cut(s) 749, 1014
BlsI GCNGC 2 cut(s) 750, 1015
Bme1390I CCNGG 3 cut(s) 67, 715, 776
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 2 cut(s) 64, 772
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 3 cut(s) 67, 715, 776
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 744
BpuMI CCSGG 2 cut(s) 67, 776
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 60, 713
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 4 cut(s) 869, 899, 902, 932
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 447, 781, 1009
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 518, 623
BseBI CCWGG 1 cut(s) 715
BseDI CCNNGG 2 cut(s) 60, 713
BseGI GGATG 3 cut(s) 292, 643, 940
BseLI CCNNNNNNNGG 4 cut(s) 66, 447, 781, 1009
BseMII CTCAG 2 cut(s) 359, 758
BseNI ACTGG 2 cut(s) 518, 623
BseRI GAGGAG 2 cut(s) 503, 953
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 2 cut(s) 735, 1000
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 4 cut(s) 67, 433, 635, 775
BslI CCNNNNNNNGG 4 cut(s) 66, 447, 781, 1009
BsmAI GTCTC 1 cut(s) 831
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 831
Bsp1286I GDGCHC 2 cut(s) 447, 729
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 1 cut(s) 1048
BspACI CCGC 3 cut(s) 54, 216, 1016
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 358, 757
BspLI GGNNCC 1 cut(s) 191
BspMAI CTGCAG 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 831
BsrFI RCCGGY 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 2 cut(s) 518, 623
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 2 cut(s) 60, 713
BssMI GATC 1 cut(s) 1048
BssSI CACGAG 1 cut(s) 477
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 715
Bst4CI ACNGT 4 cut(s) 149, 501, 706, 820
BstAPI GCANNNNNTGC 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 438, 987
BstDEI CTNAG 2 cut(s) 345, 744
BstF5I GGATG 3 cut(s) 292, 643, 940
BstH2I RGCGCY 2 cut(s) 413, 630
BstHHI GCGC 2 cut(s) 412, 629
BstKTI GATC 1 cut(s) 1051
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 1 cut(s) 1048
BstMWI GCNNNNNNNGC 5 cut(s) 62, 442, 503, 748, 911
BstNI CCWGG 1 cut(s) 715
BstNSI RCATGY 1 cut(s) 742
BstSCI CCNGG 3 cut(s) 65, 713, 774
BstSFI CTRYAG 1 cut(s) 749
BstSLI GKGCMC 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 735, 1000
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 3 cut(s) 292, 643, 940
BtsIMutI CAGTG 2 cut(s) 30, 616
Cac8I GCNNGC 2 cut(s) 438, 987
CfoI GCGC 2 cut(s) 412, 629
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 2 cut(s) 64, 772
Csp6I GTAC 4 cut(s) 396, 405, 521, 550
CviAII CATG 4 cut(s) 452, 739, 863, 1052
CviQI GTAC 4 cut(s) 396, 405, 521, 550
DdeI CTNAG 2 cut(s) 345, 744
DpnI GATC 1 cut(s) 1050
DpnII GATC 1 cut(s) 1048
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 831
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 772
Eco47III AGCGCT 1 cut(s) 411
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 713
EcoRV GATATC 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 4 cut(s) 455, 742, 866, 1055
FalI AAGNNNNNCTT 2 cut(s) 898, 930
FatI CATG 4 cut(s) 451, 738, 862, 1051
FbaI TGATCA 1 cut(s) 1048
Fnu4HI GCNGC 2 cut(s) 749, 1014
FokI GGATG 3 cut(s) 279, 650, 947
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 749, 1014
FspBI CTAG 3 cut(s) 14, 665, 1028
GlaI GCGC 2 cut(s) 411, 628
GluI GCNGC 2 cut(s) 749, 1014
GsaI CCCAGC 1 cut(s) 416
HaeII RGCGCY 2 cut(s) 413, 630
HaeIII GGCC 1 cut(s) 65
HapII CCGG 4 cut(s) 67, 433, 635, 775
HhaI GCGC 2 cut(s) 412, 629
Hin1II CATG 4 cut(s) 455, 742, 866, 1055
Hin6I GCGC 2 cut(s) 410, 627
HinP1I GCGC 2 cut(s) 410, 627
HincII GTYRAC 2 cut(s) 387, 787
HindII GTYRAC 2 cut(s) 387, 787
HindIII AAGCTT 1 cut(s) 983
HpaI GTTAAC 1 cut(s) 387
HpaII CCGG 4 cut(s) 67, 433, 635, 775
HphI GGTGA 3 cut(s) 273, 624, 955
Hpy166II GTNNAC 3 cut(s) 387, 521, 787
Hpy188I TCNGA 5 cut(s) 207, 337, 348, 355, 472
Hpy188III TCNNGA 3 cut(s) 121, 231, 665
Hpy8I GTNNAC 3 cut(s) 387, 521, 787
HpyAV CCTTC 1 cut(s) 332
HpyCH4III ACNGT 4 cut(s) 149, 501, 706, 820
HpyCH4V TGCA 5 cut(s) 476, 497, 751, 905, 1035
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 442, 503, 748, 911
HpyF3I CTNAG 2 cut(s) 345, 744
Hsp92II CATG 4 cut(s) 455, 742, 866, 1055
HspAI GCGC 2 cut(s) 410, 627
Ksp22I TGATCA 1 cut(s) 1048
KspAI GTTAAC 1 cut(s) 387
Kzo9I GATC 1 cut(s) 1048
Lsp1109I GCAGC 2 cut(s) 735, 1000
LweI GCATC 1 cut(s) 463
MaeI CTAG 3 cut(s) 14, 665, 1028
MalI GATC 1 cut(s) 1050
MboI GATC 1 cut(s) 1048
MboII GAAGA 6 cut(s) 18, 36, 194, 219, 237, 368
MhlI GDGCHC 2 cut(s) 447, 729
MluCI AATT 4 cut(s) 309, 611, 1006, 1041
MlyI GAGTC 2 cut(s) 126, 500
MmeI TCCRAC 1 cut(s) 556
MseI TTAA 3 cut(s) 371, 386, 872
MslI CAYNNNNRTG 1 cut(s) 603
MspA1I CMGCKG 1 cut(s) 748
MspI CCGG 4 cut(s) 67, 433, 635, 775
MspR9I CCNGG 3 cut(s) 67, 715, 776
MvaI CCWGG 1 cut(s) 715
MwoI GCNNNNNNNGC 5 cut(s) 62, 442, 503, 748, 911
NciI CCSGG 2 cut(s) 67, 776
NdeII GATC 1 cut(s) 1048
NlaIII CATG 4 cut(s) 455, 742, 866, 1055
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 2 cut(s) 41, 466
NspI RCATGY 1 cut(s) 742
PfeI GAWTC 8 cut(s) 35, 154, 467, 530, 642, 855, 898, 1019
PkrI GCNGC 2 cut(s) 750, 1015
PleI GAGTC 2 cut(s) 125, 499
PpsI GAGTC 2 cut(s) 125, 499
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 713
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 713
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 2 cut(s) 64, 772
PstI CTGCAG 1 cut(s) 753
PvuII CAGCTG 1 cut(s) 748
RsaI GTAC 4 cut(s) 397, 406, 522, 551
RsaNI GTAC 4 cut(s) 396, 405, 521, 550
RseI CAYNNNNRTG 1 cut(s) 603
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 371, 386, 872
SatI GCNGC 2 cut(s) 749, 1014
Sau3AI GATC 1 cut(s) 1048
Sau96I GGNCC 2 cut(s) 64, 772
SchI GAGTC 2 cut(s) 126, 500
ScrFI CCNGG 3 cut(s) 67, 715, 776
SduI GDGCHC 2 cut(s) 447, 729
SfaNI GCATC 1 cut(s) 463
SfcI CTRYAG 1 cut(s) 749
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 1 cut(s) 603
SpeI ACTAGT 1 cut(s) 1027
Sse9I AATT 4 cut(s) 309, 611, 1006, 1041
SsiI CCGC 3 cut(s) 54, 216, 1016
SspMI CTAG 3 cut(s) 14, 665, 1028
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 65, 713, 774
TaaI ACNGT 4 cut(s) 149, 501, 706, 820
TaqI TCGA 3 cut(s) 230, 648, 1056
TaqII GACCGA 1 cut(s) 855
TasI AATT 4 cut(s) 309, 611, 1006, 1041
TatI WGTACW 3 cut(s) 395, 404, 520
TfiI GAWTC 8 cut(s) 35, 154, 467, 530, 642, 855, 898, 1019
Tru1I TTAA 3 cut(s) 371, 386, 872
Tru9I TTAA 3 cut(s) 371, 386, 872
TscAI CASTG 2 cut(s) 37, 623
TseI GCWGC 2 cut(s) 748, 1013
TspDTI ATGAA 3 cut(s) 291, 468, 524
TspGWI ACGGA 1 cut(s) 815
TspRI CASTG 2 cut(s) 37, 623
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 2 cut(s) 611, 1006
XbaI TCTAGA 1 cut(s) 664
XceI RCATGY 1 cut(s) 742
XspI CTAG 3 cut(s) 14, 665, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.