FvH4_4g24601

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014008
Physical Location & Seq
Reverse (-)
26687883 .. 26689370
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24601.t1

Sequence Viewer

Length: 1128 bp
ATGAAGCTCGCTCAGGTCTCTTCGTCTCAGTCAAGAGCTTCGCTTTGCTCTCTACATGGAGTGCCTAAGTTGCCCTCTTCTTACTCCTTTGGAGCTCGTAAAGGTGTTGCCTTTAATTCAAGGCCACTCTCAGTGTGTCGTTTTTGTAGAACAGGACGTCAGAGCAAAGTAGCTGCTGGTGGCATTGGGGTATCAGCAATGAGGACTGCCTGCTGCACTGGGTTCGGCAGCTTTCATCATAAAGCAGTAGAAATGGTGTCATTGAGAAAGATGCGTGGAAAGATGTTTTTGAGGGCCTTTTCAACATGGACCTCACCGATGATATCTACGAATTTTTCTCTGGTGATGCATTCCCCATCATCACTTGCGTTGGTTACCCGGGTTGCGCTATCGGATGCTCCCCAGCGTTCAGAGGAGTGGTTTGCCTTGCGGCGAAACAAGCTGACTACAAGCACCTTCAGCACCGCATTGGGATTTTGGAAAGGAAACCGTCGACCTGAGCTCTGGCATGAGAAGGTATTTGATTCACAGAAAGAATTCGCGCAAGCTTCTAAGAATGCCATGCAATGGGGTGTGGTCAATGAAGAGGTGGCCATAGAGCGGTACAAAAGCATCACAGGTCGTGAAGTCGGTACATATGGATTTGCATCCCATGGAGAGGAGAGGTTTGATTGGCTTGGTGCCTCCCCTGATGGTCTGCTTGATTGCTTTCAGGGTGGTGGTATCCTGGAGGTCAAGTGTCCTTATAACAAGGGAAAACCGGAGCAGGGTCTGCCCTGGTCAATGATACCTTTCTATTACATGCCTCAGGTGCAGGGTCAAATGGAGATAATGGATAGAGATTGGGTTGATTTATATTGCTGGACACCAAATGGAAGCACAATATTCCGTGTGTGCAGAGACCGTAGTTACTGGGACTTGATGCATGGAATTCTAAGGGAATTTTGGTGGGAAAATGTGATTCCTGCTAAGGAGGCTCTTTTGCTGGGTAATGAAGAAAAGGCCAGGGAGTATATGCCAACTTCCACTCACAAAAAAACAGGCCTTGCAATCGTTAAGAGCTTAGAGTTAGCAAGAGAATCAAAGTTGCTGTGTAGGGAGATTGCCGGTCACATCGAGTTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
YqaJ

Protein Analysis

376

Amino Acids

42.41

Weight (kDa)

9.36

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 139 - 277 1.5e-23 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67660 AT1G67660
fragaria_vesca FvH4_4g24601
malus_domestica MD13G1109900.v1.1
prunus_persica Prupe.1G235100_v2.0.a1 Prupe.1G235100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431611
rosa_laevigata RLG00000006904
rosa_multiflora Rmu_sc0031555.1_g000001
rosa_roxburghii Rroxscaffold_5G00373070
rosa_rugosa Rorug04G0251200 Rorug04G0251300
rosa_samantha Rh4AG308100 Rh4BG315700 Rh4CG331200 Rh4DG310500
rosa_wichuraiana Rw4G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AatII GACGTC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 567
AccBSI CCGCTC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 493
AccII CGCG 1 cut(s) 542
AciI CCGC 3 cut(s) 430, 465, 601
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 4 cut(s) 331, 536, 930, 941
AcuI CTGAAG 1 cut(s) 442
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 2 cut(s) 605, 634
AfiI CCNNNNNNNGG 4 cut(s) 567, 600, 658, 767
AgsI TTSAA 2 cut(s) 120, 303
AjnI CCWGG 3 cut(s) 726, 776, 1004
AluBI AGCT 9 cut(s) 7, 38, 95, 173, 231, 442, 502, 548, 1062
AluI AGCT 9 cut(s) 7, 38, 95, 173, 231, 442, 502, 548, 1062
Alw21I GWGCWC 2 cut(s) 97, 504
Alw26I GTCTC 3 cut(s) 22, 30, 894
AlwNI CAGNNNCTG 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 5 cut(s) 122, 294, 591, 1002, 1042
ApeKI GCWGC 3 cut(s) 173, 213, 228
ApoI RAATTY 4 cut(s) 331, 536, 930, 941
Asp700I GAANNNNTTC 1 cut(s) 536
AspLEI GCGC 2 cut(s) 388, 544
AspS9I GGNCC 2 cut(s) 294, 309
AsuC2I CCSGG 2 cut(s) 379, 380
AsuHPI GGTGA 2 cut(s) 306, 355
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 1 cut(s) 309
AxyI CCTNAGG 1 cut(s) 807
BalI TGGCCA 1 cut(s) 593
BanI GGYRCC 1 cut(s) 680
BanII GRGCYC 2 cut(s) 97, 504
Bbv12I GWGCWC 2 cut(s) 97, 504
BbvI GCAGC 3 cut(s) 160, 200, 240
BccI CCATC 2 cut(s) 364, 686
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 3 cut(s) 728, 778, 1006
BciVI GTATCC 1 cut(s) 734
BcnI CCSGG 2 cut(s) 379, 380
BcoDI GTCTC 3 cut(s) 22, 30, 894
BfaI CTAG 1 cut(s) 1126
BfuI GTATCC 1 cut(s) 734
BisI GCNGC 4 cut(s) 174, 214, 229, 431
BlsI GCNGC 4 cut(s) 175, 215, 230, 432
Bme1390I CCNGG 5 cut(s) 379, 380, 728, 778, 1006
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 294, 309
BmiI GGNNCC 1 cut(s) 682
BmrFI CCNGG 5 cut(s) 379, 380, 728, 778, 1006
BmrI ACTGGG 2 cut(s) 228, 922
BmsI GCATC 6 cut(s) 261, 336, 385, 621, 656, 912
BmuI ACTGGG 2 cut(s) 228, 922
BpmI CTGGAG 1 cut(s) 749
Bpu10I CCTNAGC 3 cut(s) 12, 498, 969
BpuMI CCSGG 2 cut(s) 379, 380
BsaBI GATNNNNATC 1 cut(s) 646
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 2 cut(s) 22, 894
BsaJI CCNNGG 4 cut(s) 378, 652, 776, 1005
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 4 cut(s) 567, 600, 658, 767
Bse118I RCCGGY 1 cut(s) 1106
Bse1I ACTGG 2 cut(s) 223, 917
Bse21I CCTNAGG 1 cut(s) 807
Bse3DI GCAATG 2 cut(s) 204, 572
Bse8I GATNNNNATC 1 cut(s) 646
BseBI CCWGG 3 cut(s) 728, 778, 1006
BseDI CCNNGG 4 cut(s) 378, 652, 776, 1005
BseGI GGATG 2 cut(s) 400, 647
BseJI GATNNNNATC 1 cut(s) 646
BseLI CCNNNNNNNGG 4 cut(s) 567, 600, 658, 767
BseMI GCAATG 2 cut(s) 204, 572
BseMII CTCAG 5 cut(s) 26, 41, 144, 489, 821
BseNI ACTGG 2 cut(s) 223, 917
BseRI GAGGAG 2 cut(s) 428, 674
BseXI GCAGC 3 cut(s) 160, 200, 240
BseYI CCCAGC 2 cut(s) 402, 985
BsgI GTGCAG 3 cut(s) 199, 833, 916
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 5 cut(s) 124, 296, 593, 1004, 1044
BshNI GGYRCC 1 cut(s) 680
BsiHKAI GWGCWC 2 cut(s) 97, 504
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 3 cut(s) 379, 761, 1107
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 4 cut(s) 567, 600, 658, 767
BsmAI GTCTC 3 cut(s) 22, 30, 894
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 929
BsmI GAATGC 2 cut(s) 349, 562
BsnI GGCC 5 cut(s) 124, 296, 593, 1004, 1044
Bso31I GGTCTC 2 cut(s) 22, 894
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 97, 504
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 3 cut(s) 430, 465, 601
BspANI GGCC 5 cut(s) 124, 296, 593, 1004, 1044
BspCNI CTCAG 5 cut(s) 25, 40, 143, 490, 820
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 1 cut(s) 682
BspT107I GGYRCC 1 cut(s) 680
BspTNI GGTCTC 2 cut(s) 22, 894
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 2 cut(s) 204, 572
BsrFI RCCGGY 1 cut(s) 1106
BsrI ACTGG 2 cut(s) 223, 917
BssAI RCCGGY 1 cut(s) 1106
BssECI CCNNGG 4 cut(s) 378, 652, 776, 1005
BssNI GRCGYC 1 cut(s) 157
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 3 cut(s) 728, 778, 1006
Bst4CI ACNGT 2 cut(s) 491, 905
Bst6I CTCTTC 3 cut(s) 25, 82, 579
BstACI GRCGYC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 772
BstC8I GCNNGC 3 cut(s) 9, 211, 546
BstDSI CCRYGG 1 cut(s) 652
BstEII GGTNACC 1 cut(s) 373
BstF5I GGATG 2 cut(s) 400, 647
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 2 cut(s) 388, 544
BstMAI GTCTC 3 cut(s) 22, 30, 894
BstMWI GCNNNNNNNGC 6 cut(s) 70, 439, 459, 772, 811, 974
BstNI CCWGG 3 cut(s) 728, 778, 1006
BstNSI RCATGY 1 cut(s) 805
BstPI GGTNACC 1 cut(s) 373
BstSCI CCNGG 5 cut(s) 377, 378, 726, 776, 1004
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 3 cut(s) 160, 200, 240
Bsu36I CCTNAGG 1 cut(s) 807
BsuI GTATCC 1 cut(s) 734
BsuRI GGCC 5 cut(s) 124, 296, 593, 1004, 1044
BtgI CCRYGG 1 cut(s) 652
BtsCI GGATG 2 cut(s) 400, 647
BtsIMutI CAGTG 2 cut(s) 138, 216
Cac8I GCNNGC 3 cut(s) 9, 211, 546
CaiI CAGNNNCTG 1 cut(s) 772
CfoI GCGC 2 cut(s) 388, 544
Cfr10I RCCGGY 1 cut(s) 1106
Cfr13I GGNCC 2 cut(s) 294, 309
Cfr9I CCCGGG 1 cut(s) 378
Csp6I GTAC 2 cut(s) 604, 633
CviAII CATG 7 cut(s) 56, 306, 509, 562, 653, 802, 926
CviQI GTAC 2 cut(s) 604, 633
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 3 cut(s) 25, 82, 579
EarI CTCTTC 3 cut(s) 25, 82, 579
Ecl136II GAGCTC 2 cut(s) 95, 502
Eco130I CCWWGG 1 cut(s) 652
Eco147I AGGCCT 1 cut(s) 1044
Eco24I GRGCYC 2 cut(s) 97, 504
Eco31I GGTCTC 2 cut(s) 22, 894
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 309
Eco53kI GAGCTC 2 cut(s) 95, 502
Eco57I CTGAAG 1 cut(s) 442
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 373
EcoICRI GAGCTC 2 cut(s) 95, 502
EcoO109I RGGNCCY 1 cut(s) 294
EcoO65I GGTNACC 1 cut(s) 373
EcoRI GAATTC 2 cut(s) 536, 930
EcoRII CCWGG 3 cut(s) 726, 776, 1004
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 652
EcoT22I ATGCAT 2 cut(s) 351, 927
EcoT38I GRGCYC 2 cut(s) 97, 504
ErhI CCWWGG 1 cut(s) 652
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 7 cut(s) 59, 309, 512, 565, 656, 805, 929
FaqI GGGAC 1 cut(s) 929
FatI CATG 7 cut(s) 55, 305, 508, 561, 652, 801, 925
FauNDI CATATG 1 cut(s) 637
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 174, 214, 229, 431
FokI GGATG 2 cut(s) 407, 634
FriOI GRGCYC 2 cut(s) 97, 504
Fsp4HI GCNGC 4 cut(s) 174, 214, 229, 431
FspBI CTAG 1 cut(s) 1126
GlaI GCGC 2 cut(s) 387, 543
GluI GCNGC 4 cut(s) 174, 214, 229, 431
GsaI CCCAGC 2 cut(s) 406, 989
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 5 cut(s) 124, 296, 593, 1004, 1044
HapII CCGG 3 cut(s) 379, 761, 1107
HhaI GCGC 2 cut(s) 388, 544
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 7 cut(s) 59, 309, 512, 565, 656, 805, 929
Hin6I GCGC 2 cut(s) 386, 542
HinP1I GCGC 2 cut(s) 386, 542
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HindIII AAGCTT 1 cut(s) 546
HinfI GANTC 3 cut(s) 524, 961, 1079
HpaII CCGG 3 cut(s) 379, 761, 1107
HphI GGTGA 2 cut(s) 306, 355
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 3 cut(s) 162, 394, 412
Hpy188III TCNNGA 2 cut(s) 33, 623
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 2 cut(s) 466, 508
HpyCH4III ACNGT 2 cut(s) 491, 905
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 8 cut(s) 216, 349, 565, 647, 814, 897, 925, 1049
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 439, 459, 772, 811, 974
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 7 cut(s) 59, 309, 512, 565, 656, 805, 929
HspAI GCGC 2 cut(s) 386, 542
LmnI GCTCC 3 cut(s) 92, 403, 763
Lsp1109I GCAGC 3 cut(s) 160, 200, 240
LweI GCATC 6 cut(s) 261, 336, 385, 621, 656, 912
MaeI CTAG 1 cut(s) 1126
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 3 cut(s) 373, 908, 1109
MbiI CCGCTC 1 cut(s) 601
MboII GAAGA 4 cut(s) 12, 69, 596, 1007
MhlI GDGCHC 2 cut(s) 97, 504
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 5 cut(s) 115, 331, 536, 930, 941
MluNI TGGCCA 1 cut(s) 593
Mox20I TGGCCA 1 cut(s) 593
Mph1103I ATGCAT 2 cut(s) 351, 927
MroXI GAANNNNTTC 1 cut(s) 536
MscI TGGCCA 1 cut(s) 593
MseI TTAA 2 cut(s) 114, 1056
Msp20I TGGCCA 1 cut(s) 593
MspI CCGG 3 cut(s) 379, 761, 1107
MspR9I CCNGG 5 cut(s) 379, 380, 728, 778, 1006
Mva1269I GAATGC 2 cut(s) 349, 562
MvaI CCWGG 3 cut(s) 728, 778, 1006
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 6 cut(s) 70, 439, 459, 772, 811, 974
NciI CCSGG 2 cut(s) 379, 380
NcoI CCATGG 1 cut(s) 652
NdeI CATATG 1 cut(s) 637
NlaIII CATG 7 cut(s) 59, 309, 512, 565, 656, 805, 929
NlaIV GGNNCC 1 cut(s) 682
NmuCI GTSAC 1 cut(s) 1109
NsiI ATGCAT 2 cut(s) 351, 927
NspI RCATGY 1 cut(s) 805
PceI AGGCCT 1 cut(s) 1044
PctI GAATGC 2 cut(s) 349, 562
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 3 cut(s) 524, 961, 1079
PflMI CCANNNNNTGG 1 cut(s) 567
PfoI TCCNGGA 1 cut(s) 726
PkrI GCNGC 4 cut(s) 175, 215, 230, 432
PsiI TTATAA 1 cut(s) 747
Psp124BI GAGCTC 2 cut(s) 97, 504
Psp6I CCWGG 3 cut(s) 726, 776, 1004
PspEI GGTNACC 1 cut(s) 373
PspFI CCCAGC 2 cut(s) 402, 985
PspGI CCWGG 3 cut(s) 726, 776, 1004
PspN4I GGNNCC 1 cut(s) 682
PspPI GGNCC 2 cut(s) 294, 309
PstNI CAGNNNCTG 1 cut(s) 772
RsaI GTAC 2 cut(s) 605, 634
RsaNI GTAC 2 cut(s) 604, 633
SacI GAGCTC 2 cut(s) 97, 504
SalI GTCGAC 1 cut(s) 492
SaqAI TTAA 2 cut(s) 114, 1056
SatI GCNGC 4 cut(s) 174, 214, 229, 431
Sau96I GGNCC 2 cut(s) 294, 309
ScrFI CCNGG 5 cut(s) 379, 380, 728, 778, 1006
SduI GDGCHC 2 cut(s) 97, 504
SfaNI GCATC 6 cut(s) 261, 336, 385, 621, 656, 912
SinI GGWCC 1 cut(s) 309
SmaI CCCGGG 1 cut(s) 380
Sse9I AATT 5 cut(s) 115, 331, 536, 930, 941
SseBI AGGCCT 1 cut(s) 1044
SsiI CCGC 3 cut(s) 430, 465, 601
SspI AATATT 1 cut(s) 885
SspMI CTAG 1 cut(s) 1126
SstI GAGCTC 2 cut(s) 97, 504
StuI AGGCCT 1 cut(s) 1044
StyD4I CCNGG 5 cut(s) 377, 378, 726, 776, 1004
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 2 cut(s) 491, 905
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 493, 1116
TasI AATT 5 cut(s) 115, 331, 536, 930, 941
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 3 cut(s) 524, 961, 1079
Tru1I TTAA 2 cut(s) 114, 1056
Tru9I TTAA 2 cut(s) 114, 1056
TscAI CASTG 2 cut(s) 138, 223
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 3 cut(s) 173, 213, 228
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 4 cut(s) 17, 224, 597, 1008
TspGWI ACGGA 1 cut(s) 878
TspMI CCCGGG 1 cut(s) 378
TspRI CASTG 2 cut(s) 138, 223
Van91I CCANNNNNTGG 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 4 cut(s) 331, 536, 930, 941
XceI RCATGY 1 cut(s) 805
XmaI CCCGGG 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 1 cut(s) 1126
ZraI GACGTC 1 cut(s) 158
Zsp2I ATGCAT 2 cut(s) 351, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.