Prupe.1G235100_v2.0.a1

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014008
Physical Location & Seq
Reverse (-)
24890738 .. 24892629
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G235100.1

Sequence Viewer

Length: 1152 bp
ATGAAGCTCCTTCAAATTTCTTCCTCTCATTCCGTTGCTTCTCTTAAATGTCTCCATGGAAGAGTGCCCTCTCATAATATCAAACCAGCTTCTGCTTCCTTCGCAACTCACAAAGTTGGAGTCTTTAATTCAAGCCGTCTCTCAGTGTGTGGCTTTTGCAGGACCTCTCGTCCAAACAAAGTGGCCATGGGTGCCATTGTCATATCAGCAACGAGCAATACCTGCTGTACCAGATTCTGCAGCTTTCACCAGAAAGCTGTAGAATTTCTATCTTCAAGGAAAATAGGTGCAAATGTGATTGTGAGACCTTTTTCCACATGCACCTCACCGGTGATCTCTCCAATTTTCCCTCTTGTCATGCGTCCCCCATCGTCCTTAGTGATGGCCACCCAGCTTTCACCATCTGATGCTCCCCAACGATCAGAGGAGTGGTTTGCTCTACGAAGGGACAAGCTCACCACAAGCACCTTCAGCACTGCCTTGGGATTTTGGAAAGGGAACCGTCGGCCGGAGCTCTGGCATGAGAAGGTATTTGAATCAGAGAAACAAATTGTGGAAGCTTCTAAAAGAGCCATGGAATGGGGCGTACTCAATGAAGAAGTGGCCATCGGCAAGTACAAAAGCATCACAGGTCGTGAAGTGAATTCATACGGATTTGCAACCCACACAGAGGAGCGACTTGGTTGGGTTGGTGCCTCCCCTGATGGTCTTCTTGATGGTCTTATCGATTGCTTTCAAGGCGGTGGGATACTGGAAGTGAAGTGTCCATATAACAAGGGCAAGCCTGAGAAGGGTCTGCCCTGGTCAACCATGCCGTTCTATTACATGCCTCAGGTGCAGGGTCAAATGGAGATAATGGACAGAGAGTGGGTTGATCTGTATTGCTGGACACCAAACGGAAGCACCATATTCCGTGTGTGCAGGGACCGTAGTTACTGGAACTTGATGCATGGAATTTTAAGGGAATTTTGGTGGGAAAATGTGATTCCTGCAAGGGAAGCTCTGTTGTTGGGGAAGGAAGAAGAGGCCAAGCAATATATCCCAACTTCTACACACAAGCAAACAGGGCTTGCAATTGTTAAGAGCTTGAAGTTAGCCAGTGAGGCTAAGTTGTTGTGTAGAGAAATTGCAGGTCACGTTGAATTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
YqaJ

Protein Analysis

384

Amino Acids

43.02

Weight (kDa)

9.15

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67660 AT1G67660
fragaria_vesca FvH4_4g24601
malus_domestica MD13G1109900.v1.1
prunus_persica Prupe.1G235100_v2.0.a1 Prupe.1G235100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431611
rosa_laevigata RLG00000006904
rosa_multiflora Rmu_sc0031555.1_g000001
rosa_roxburghii Rroxscaffold_5G00373070
rosa_rugosa Rorug04G0251200 Rorug04G0251300
rosa_samantha Rh4AG308100 Rh4BG315700 Rh4CG331200 Rh4DG310500
rosa_wichuraiana Rw4G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 230, 1121
AccB1I GGYRCC 2 cut(s) 191, 692
AccB7I CCANNNNNTGG 1 cut(s) 579
AciI CCGC 1 cut(s) 741
AcoI YGGCCR 4 cut(s) 183, 384, 506, 603
AcsI RAATTY 6 cut(s) 15, 263, 643, 954, 965, 1142
AcuI CTGAAG 1 cut(s) 454
AfaI GTAC 3 cut(s) 229, 588, 617
AfiI CCNNNNNNNGG 4 cut(s) 508, 579, 670, 791
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 7 cut(s) 14, 132, 276, 536, 737, 1090, 1142
AhdI GACNNNNNGTC 1 cut(s) 168
AjnI CCWGG 1 cut(s) 800
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 3 cut(s) 56, 143, 298
AlwNI CAGNNNCTG 2 cut(s) 92, 237
AoxI GGCC 5 cut(s) 183, 384, 506, 603, 1026
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 6 cut(s) 15, 263, 643, 954, 965, 1142
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AsiGI ACCGGT 1 cut(s) 328
AspS9I GGNCC 2 cut(s) 162, 925
AsuHPI GGTGA 5 cut(s) 239, 318, 343, 390, 448
AvaII GGWCC 2 cut(s) 162, 925
AxyI CCTNAGG 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 69
BalI TGGCCA 3 cut(s) 185, 386, 605
BanI GGYRCC 2 cut(s) 191, 692
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 1 cut(s) 252
BccI CCATC 6 cut(s) 376, 376, 409, 614, 698, 710
BceAI ACGGC 2 cut(s) 120, 799
BciT130I CCWGG 1 cut(s) 802
BciVI GTATCC 1 cut(s) 741
BcoDI GTCTC 3 cut(s) 56, 143, 298
BfaI CTAG 1 cut(s) 1150
BfmI CTRYAG 2 cut(s) 238, 258
BfuAI ACCTGC 2 cut(s) 230, 1121
BfuI GTATCC 1 cut(s) 741
BglI GCCNNNNNGGC 1 cut(s) 1103
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 802
Bme18I GGWCC 2 cut(s) 162, 925
BmeRI GACNNNNNGTC 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 162, 925
BmiI GGNNCC 4 cut(s) 193, 500, 694, 926
BmrFI CCNGG 1 cut(s) 802
BmsI GCATC 3 cut(s) 397, 633, 936
BpiI GAAGAC 1 cut(s) 701
Bsa29I ATCGAT 1 cut(s) 726
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 5 cut(s) 55, 186, 480, 573, 800
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 4 cut(s) 508, 579, 670, 791
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 3 cut(s) 756, 941, 1098
Bse21I CCTNAGG 1 cut(s) 831
BseBI CCWGG 1 cut(s) 802
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 55, 186, 480, 573, 800
BseLI CCNNNNNNNGG 4 cut(s) 508, 579, 670, 791
BseMII CTCAG 3 cut(s) 156, 777, 845
BseNI ACTGG 3 cut(s) 756, 941, 1098
BseRI GAGGAG 2 cut(s) 440, 686
BseSI GKGCMC 1 cut(s) 69
BseX3I CGGCCG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 390
BsgI GTGCAG 2 cut(s) 857, 940
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 5 cut(s) 185, 386, 508, 605, 1028
BshNI GGYRCC 2 cut(s) 191, 692
BshTI ACCGGT 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 726
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 2 cut(s) 329, 509
BslFI GGGAC 3 cut(s) 348, 461, 938
BslI CCNNNNNNNGG 4 cut(s) 508, 579, 670, 791
BsmAI GTCTC 3 cut(s) 56, 143, 298
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 3 cut(s) 348, 461, 938
BsnI GGCC 5 cut(s) 185, 386, 508, 605, 1028
Bso31I GGTCTC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 69, 516
Bsp143I GATC 3 cut(s) 333, 419, 874
Bsp19I CCATGG 3 cut(s) 55, 186, 573
BspACI CCGC 1 cut(s) 741
BspANI GGCC 5 cut(s) 185, 386, 508, 605, 1028
BspCNI CTCAG 3 cut(s) 155, 778, 844
BspDI ATCGAT 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 193, 500, 694, 926
BspMAI CTGCAG 1 cut(s) 242
BspMI ACCTGC 2 cut(s) 230, 1121
BspT107I GGYRCC 2 cut(s) 191, 692
BspTNI GGTCTC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 3 cut(s) 756, 941, 1098
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 5 cut(s) 55, 186, 480, 573, 800
BssMI GATC 3 cut(s) 333, 419, 874
BssT1I CCWWGG 4 cut(s) 55, 186, 480, 573
Bst2UI CCWGG 1 cut(s) 802
Bst4CI ACNGT 2 cut(s) 503, 929
Bst6I CTCTTC 2 cut(s) 55, 1017
BstAPI GCANNNNNTGC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 782, 1071
BstDEI CTNAG 5 cut(s) 142, 376, 786, 831, 1107
BstDSI CCRYGG 3 cut(s) 55, 186, 573
BstKTI GATC 3 cut(s) 336, 422, 877
BstMAI GTCTC 3 cut(s) 56, 143, 298
BstMBI GATC 3 cut(s) 333, 419, 874
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 9 cut(s) 101, 191, 222, 471, 738, 835, 998, 1066, 1103
BstNI CCWGG 1 cut(s) 802
BstNSI RCATGY 2 cut(s) 321, 829
BstSCI CCNGG 1 cut(s) 800
BstSFI CTRYAG 2 cut(s) 238, 258
BstSLI GKGCMC 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 701
BstZI CGGCCG 1 cut(s) 506
Bsu15I ATCGAT 1 cut(s) 726
Bsu36I CCTNAGG 1 cut(s) 831
BsuI GTATCC 1 cut(s) 741
BsuRI GGCC 5 cut(s) 185, 386, 508, 605, 1028
BsuTUI ATCGAT 1 cut(s) 726
BtgI CCRYGG 3 cut(s) 55, 186, 573
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 3 cut(s) 150, 474, 1105
BveI ACCTGC 2 cut(s) 230, 1121
Cac8I GCNNGC 2 cut(s) 782, 1071
CaiI CAGNNNCTG 2 cut(s) 92, 237
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 162, 925
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 1 cut(s) 350
Csp6I GTAC 3 cut(s) 228, 587, 616
CspAI ACCGGT 1 cut(s) 328
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 9 cut(s) 56, 187, 318, 358, 521, 574, 811, 826, 950
CviQI GTAC 3 cut(s) 228, 587, 616
DdeI CTNAG 5 cut(s) 142, 376, 786, 831, 1107
DpnI GATC 3 cut(s) 335, 421, 876
DpnII GATC 3 cut(s) 333, 419, 874
DriI GACNNNNNGTC 1 cut(s) 168
EaeI YGGCCR 4 cut(s) 183, 384, 506, 603
EagI CGGCCG 1 cut(s) 506
Eam1104I CTCTTC 2 cut(s) 55, 1017
Eam1105I GACNNNNNGTC 1 cut(s) 168
EarI CTCTTC 2 cut(s) 55, 1017
Ecl136II GAGCTC 1 cut(s) 514
EclXI CGGCCG 1 cut(s) 506
Eco130I CCWWGG 4 cut(s) 55, 186, 480, 573
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 162, 925
Eco52I CGGCCG 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 454
Eco81I CCTNAGG 1 cut(s) 831
EcoICRI GAGCTC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 800
EcoT14I CCWWGG 4 cut(s) 55, 186, 480, 573
EcoT22I ATGCAT 1 cut(s) 951
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 4 cut(s) 55, 186, 480, 573
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 9 cut(s) 59, 190, 321, 361, 524, 577, 814, 829, 953
FaqI GGGAC 3 cut(s) 348, 461, 938
FatI CATG 9 cut(s) 55, 186, 317, 357, 520, 573, 810, 825, 949
Fnu4HI GCNGC 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 1150
GluI GCNGC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 394
HaeIII GGCC 5 cut(s) 185, 386, 508, 605, 1028
HapII CCGG 2 cut(s) 329, 509
HgaI GACGC 1 cut(s) 350
Hin1II CATG 9 cut(s) 59, 190, 321, 361, 524, 577, 814, 829, 953
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 4 cut(s) 120, 234, 536, 985
HpaII CCGG 2 cut(s) 329, 509
HphI GGTGA 5 cut(s) 239, 318, 343, 390, 448
Hpy166II GTNNAC 1 cut(s) 807
Hpy188I TCNGA 3 cut(s) 406, 424, 541
Hpy188III TCNNGA 2 cut(s) 635, 713
Hpy8I GTNNAC 1 cut(s) 807
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 7 cut(s) 20, 109, 438, 478, 520, 784, 1009
HpyCH4III ACNGT 2 cut(s) 503, 929
HpyCH4IV ACGT 1 cut(s) 1137
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 191, 222, 471, 738, 835, 998, 1066, 1103
HpyF3I CTNAG 5 cut(s) 142, 376, 786, 831, 1107
HpySE526I ACGT 1 cut(s) 1137
Hsp92II CATG 9 cut(s) 59, 190, 321, 361, 524, 577, 814, 829, 953
Kzo9I GATC 3 cut(s) 333, 419, 874
LmnI GCTCC 4 cut(s) 12, 415, 511, 673
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 3 cut(s) 397, 633, 936
MaeI CTAG 1 cut(s) 1150
MaeII ACGT 1 cut(s) 1137
MaeIII GTNAC 2 cut(s) 932, 1133
MalI GATC 3 cut(s) 335, 421, 876
MboI GATC 3 cut(s) 333, 419, 874
MboII GAAGA 7 cut(s) 12, 72, 264, 608, 701, 1031, 1034
MfeI CAATTG 1 cut(s) 1074
MhlI GDGCHC 2 cut(s) 69, 516
MlsI TGGCCA 3 cut(s) 185, 386, 605
MluNI TGGCCA 3 cut(s) 185, 386, 605
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 97
Mox20I TGGCCA 3 cut(s) 185, 386, 605
Mph1103I ATGCAT 1 cut(s) 951
MscI TGGCCA 3 cut(s) 185, 386, 605
MseI TTAA 4 cut(s) 45, 126, 959, 1080
Msp20I TGGCCA 3 cut(s) 185, 386, 605
MspI CCGG 2 cut(s) 329, 509
MspR9I CCNGG 1 cut(s) 802
MunI CAATTG 1 cut(s) 1074
MvaI CCWGG 1 cut(s) 802
MwoI GCNNNNNNNGC 9 cut(s) 101, 191, 222, 471, 738, 835, 998, 1066, 1103
NcoI CCATGG 3 cut(s) 55, 186, 573
NdeII GATC 3 cut(s) 333, 419, 874
NlaIII CATG 9 cut(s) 59, 190, 321, 361, 524, 577, 814, 829, 953
NlaIV GGNNCC 4 cut(s) 193, 500, 694, 926
NmuCI GTSAC 1 cut(s) 1133
NsiI ATGCAT 1 cut(s) 951
NspI RCATGY 2 cut(s) 321, 829
PfeI GAWTC 3 cut(s) 234, 536, 985
PflMI CCANNNNNTGG 1 cut(s) 579
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 800
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 800
PspN4I GGNNCC 4 cut(s) 193, 500, 694, 926
PspPI GGNCC 2 cut(s) 162, 925
PspPPI RGGWCCY 1 cut(s) 162
PstI CTGCAG 1 cut(s) 242
PstNI CAGNNNCTG 2 cut(s) 92, 237
RsaI GTAC 3 cut(s) 229, 588, 617
RsaNI GTAC 3 cut(s) 228, 587, 616
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 4 cut(s) 45, 126, 959, 1080
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 3 cut(s) 333, 419, 874
Sau96I GGNCC 2 cut(s) 162, 925
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 802
SduI GDGCHC 2 cut(s) 69, 516
SfaNI GCATC 3 cut(s) 397, 633, 936
SfcI CTRYAG 2 cut(s) 238, 258
SgrAI CRCCGGYG 1 cut(s) 328
SinI GGWCC 2 cut(s) 162, 925
SsiI CCGC 1 cut(s) 741
SspMI CTAG 1 cut(s) 1150
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 800
StyI CCWWGG 4 cut(s) 55, 186, 480, 573
TaaI ACNGT 2 cut(s) 503, 929
TaiI ACGT 1 cut(s) 1140
TaqI TCGA 1 cut(s) 726
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 3 cut(s) 234, 536, 985
Tru1I TTAA 4 cut(s) 45, 126, 959, 1080
Tru9I TTAA 4 cut(s) 45, 126, 959, 1080
TscAI CASTG 3 cut(s) 150, 481, 1105
TseFI GTSAC 1 cut(s) 1133
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 1133
TspDTI ATGAA 3 cut(s) 17, 609, 636
TspGWI ACGGA 4 cut(s) 22, 666, 902, 912
TspRI CASTG 3 cut(s) 150, 481, 1105
Van91I CCANNNNNTGG 1 cut(s) 579
VpaK11BI GGWCC 2 cut(s) 162, 925
XapI RAATTY 6 cut(s) 15, 263, 643, 954, 965, 1142
XceI RCATGY 2 cut(s) 321, 829
XspI CTAG 1 cut(s) 1150
Zsp2I ATGCAT 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.