Rmu_sc0031555.1_g000001

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031555.1
OG0014008
Physical Location & Seq
Forward (+)
43 .. 1728
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031555.1_g000001.1.cds

Sequence Viewer

Length: 1011 bp
atgcgttccccatcgtcacttgcgttggctacccggggtgcactatctgatgctccccagcgttcagaggagtggtttgccttgcggcgaaacaaactgactacaagcaccttcagcactgccctggggttttggaagggaaaccgtcgacctgagctctggcatgagaaggtatttgattcacagaaagaattcgcgcaagcttctaaaaatgccatgcaatggggtgtgctcaatgaagaggtggccatagagcgctataaaagcatcacaggtcgtgaagtgggtacatatggatttgcatcccacggagaggagcggtttgattggcttggtgcctcccctgatggtctgcttgattgctttcaaggtggtggtatcctggaagtgaagtgtccttttaacaagggaaaaccggagcagggtctgccctggtcaacgatgcctttctattacatgcctcaggtgcagggtcaaatggagataatggatagagagtgggttgatttatattgctggacaccaaatggaagcacaatattccgcgtgtgccgagaccgtagttactgggacttgatgcatggaattttaagggaattttggtgggataatgtgattcctgctaaggaggctcttttgctgggtaatgaagaaaaggccagggaatatatgccaacttctactcacaaaaaaaccggccttgcaatcgttaagagcttggagttagcaagaggatcaaagttgctgtgtagggagattgctggccacatcgaggcttggcatggatatagggtttactattttaggcatggcttgactgcttgttgcctgctgtgtgactcggtcaatatttgggacaccaatcccgatccaccgccatcaagaccatcggagaatgacaagaagaagagcaaggaggggaagagcaagttcgggaagctgagcttcaaatggttgaaactcggcagcaagaaaagttcaaaggagcaaggccgggaagacaatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
YqaJ

Protein Analysis

336

Amino Acids

38.52

Weight (kDa)

8.87

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67660 AT1G67660
fragaria_vesca FvH4_4g24601
malus_domestica MD13G1109900.v1.1
prunus_persica Prupe.1G235100_v2.0.a1 Prupe.1G235100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431611
rosa_laevigata RLG00000006904
rosa_multiflora Rmu_sc0031555.1_g000001
rosa_roxburghii Rroxscaffold_5G00373070
rosa_rugosa Rorug04G0251200 Rorug04G0251300
rosa_samantha Rh4AG308100 Rh4BG315700 Rh4CG331200 Rh4DG310500
rosa_wichuraiana Rw4G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 222
AccBSI CCGCTC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 148
AccII CGCG 2 cut(s) 197, 546
AciI CCGC 4 cut(s) 85, 319, 544, 875
AclWI GGATC 2 cut(s) 742, 863
AcoI YGGCCR 2 cut(s) 246, 763
AcsI RAATTY 3 cut(s) 191, 585, 596
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 1 cut(s) 289
AfeI AGCGCT 1 cut(s) 257
AfiI CCNNNNNNNGG 4 cut(s) 222, 313, 422, 772
AgsI TTSAA 4 cut(s) 368, 949, 958, 981
AjnI CCWGG 4 cut(s) 123, 381, 431, 659
AluBI AGCT 5 cut(s) 157, 203, 717, 940, 945
AluI AGCT 5 cut(s) 157, 203, 717, 940, 945
Alw21I GWGCWC 3 cut(s) 43, 159, 234
Alw26I GTCTC 1 cut(s) 549
Alw44I GTGCAC 1 cut(s) 39
AlwI GGATC 2 cut(s) 742, 863
AlwNI CAGNNNCTG 1 cut(s) 427
Ama87I CYCGRG 1 cut(s) 33
Aor51HI AGCGCT 1 cut(s) 257
AoxI GGCC 5 cut(s) 246, 657, 697, 763, 991
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 966
ApoI RAATTY 3 cut(s) 191, 585, 596
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 2 cut(s) 199, 258
AsuC2I CCSGG 3 cut(s) 34, 35, 995
AvaI CYCGRG 1 cut(s) 33
AxyI CCTNAGG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 43
BalI TGGCCA 2 cut(s) 248, 765
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 1005
Bbv12I GWGCWC 3 cut(s) 43, 159, 234
BbvI GCAGC 1 cut(s) 978
BccI CCATC 4 cut(s) 19, 341, 886, 895
BciT130I CCWGG 4 cut(s) 125, 383, 433, 661
BciVI GTATCC 1 cut(s) 389
BcnI CCSGG 3 cut(s) 34, 35, 995
BcoDI GTCTC 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 259
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 2 cut(s) 86, 967
BlpI GCTNAGC 1 cut(s) 941
BlsI GCNGC 2 cut(s) 87, 968
Bme1390I CCNGG 7 cut(s) 34, 35, 125, 383, 433, 661, 995
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 7 cut(s) 34, 35, 125, 383, 433, 661, 995
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 5 cut(s) 40, 276, 311, 432, 567
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 2 cut(s) 153, 624
Bpu1102I GCTNAGC 1 cut(s) 941
BpuMI CCSGG 3 cut(s) 34, 35, 995
BsaBI GATNNNNATC 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 549
BsaJI CCNNGG 7 cut(s) 33, 34, 123, 124, 307, 431, 660
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 4 cut(s) 222, 313, 422, 772
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 1 cut(s) 572
Bse21I CCTNAGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 227
Bse8I GATNNNNATC 1 cut(s) 301
BseBI CCWGG 4 cut(s) 125, 383, 433, 661
BseDI CCNNGG 7 cut(s) 33, 34, 123, 124, 307, 431, 660
BseGI GGATG 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 301
BseLI CCNNNNNNNGG 4 cut(s) 222, 313, 422, 772
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 3 cut(s) 144, 476, 932
BseNI ACTGG 1 cut(s) 572
BseRI GAGGAG 2 cut(s) 83, 329
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 978
BseYI CCCAGC 2 cut(s) 57, 640
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 2 cut(s) 197, 546
BshFI GGCC 5 cut(s) 248, 659, 699, 765, 993
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 3 cut(s) 43, 159, 234
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 4 cut(s) 34, 416, 696, 994
BslFI GGGAC 2 cut(s) 584, 869
BslI CCNNNNNNNGG 4 cut(s) 222, 313, 422, 772
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 584, 869
BsnI GGCC 5 cut(s) 248, 659, 699, 765, 993
Bso31I GGTCTC 1 cut(s) 549
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 43, 159, 234
Bsp143I GATC 2 cut(s) 734, 868
Bsp1720I GCTNAGC 1 cut(s) 941
BspACI CCGC 4 cut(s) 85, 319, 544, 875
BspANI GGCC 5 cut(s) 248, 659, 699, 765, 993
BspCNI CTCAG 3 cut(s) 145, 475, 933
BspFNI CGCG 2 cut(s) 197, 546
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 2 cut(s) 742, 863
BspQI GCTCTTC 2 cut(s) 902, 917
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 549
BsrBI CCGCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 1 cut(s) 572
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 7 cut(s) 33, 34, 123, 124, 307, 431, 660
BssMI GATC 2 cut(s) 734, 868
Bst2UI CCWGG 4 cut(s) 125, 383, 433, 661
Bst4CI ACNGT 2 cut(s) 146, 560
Bst6I CTCTTC 3 cut(s) 234, 902, 917
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 201, 763, 830
BstDEI CTNAG 4 cut(s) 153, 462, 624, 941
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 2 cut(s) 197, 546
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 2 cut(s) 199, 258
BstKTI GATC 2 cut(s) 737, 871
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 2 cut(s) 734, 868
BstMWI GCNNNNNNNGC 5 cut(s) 114, 264, 427, 466, 629
BstNI CCWGG 4 cut(s) 125, 383, 433, 661
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 7 cut(s) 32, 33, 123, 381, 431, 659, 993
BstSLI GKGCMC 1 cut(s) 43
BstUI CGCG 2 cut(s) 197, 546
BstV1I GCAGC 1 cut(s) 978
BstV2I GAAGAC 1 cut(s) 1005
Bsu36I CCTNAGG 1 cut(s) 462
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 5 cut(s) 248, 659, 699, 765, 993
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 3 cut(s) 201, 763, 830
CaiI CAGNNNCTG 1 cut(s) 427
CfoI GCGC 2 cut(s) 199, 258
Cfr10I RCCGGY 1 cut(s) 695
Cfr9I CCCGGG 1 cut(s) 33
Csp6I GTAC 1 cut(s) 288
CviAII CATG 6 cut(s) 164, 217, 457, 581, 782, 809
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 4 cut(s) 153, 462, 624, 941
DpnI GATC 2 cut(s) 736, 870
DpnII GATC 2 cut(s) 734, 868
EaeI YGGCCR 2 cut(s) 246, 763
Eam1104I CTCTTC 3 cut(s) 234, 902, 917
EarI CTCTTC 3 cut(s) 234, 902, 917
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 549
Eco47III AGCGCT 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 4 cut(s) 123, 381, 431, 659
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 6 cut(s) 167, 220, 460, 584, 785, 812
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 2 cut(s) 584, 869
FatI CATG 6 cut(s) 163, 216, 456, 580, 781, 808
FauNDI CATATG 1 cut(s) 292
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 86, 967
FokI GGATG 1 cut(s) 289
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 86, 967
GlaI GCGC 2 cut(s) 198, 257
GluI GCNGC 2 cut(s) 86, 967
GsaI CCCAGC 2 cut(s) 61, 644
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 5 cut(s) 248, 659, 699, 765, 993
HapII CCGG 4 cut(s) 34, 416, 696, 994
HhaI GCGC 2 cut(s) 199, 258
Hin1II CATG 6 cut(s) 167, 220, 460, 584, 785, 812
Hin6I GCGC 2 cut(s) 197, 256
HinP1I GCGC 2 cut(s) 197, 256
HincII GTYRAC 2 cut(s) 149, 438
HindII GTYRAC 2 cut(s) 149, 438
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 3 cut(s) 179, 616, 839
HpaII CCGG 4 cut(s) 34, 416, 696, 994
Hpy166II GTNNAC 4 cut(s) 41, 149, 438, 796
Hpy188I TCNGA 4 cut(s) 49, 67, 892, 1010
Hpy188III TCNNGA 4 cut(s) 278, 866, 882, 934
Hpy8I GTNNAC 4 cut(s) 41, 149, 438, 796
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 3 cut(s) 121, 130, 163
HpyCH4III ACNGT 2 cut(s) 146, 560
HpyCH4V TGCA 6 cut(s) 41, 220, 302, 469, 580, 704
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 264, 427, 466, 629
HpyF3I CTNAG 4 cut(s) 153, 462, 624, 941
Hsp92II CATG 6 cut(s) 167, 220, 460, 584, 785, 812
HspAI GCGC 2 cut(s) 197, 256
Kzo9I GATC 2 cut(s) 734, 868
LguI GCTCTTC 2 cut(s) 902, 917
LmnI GCTCC 4 cut(s) 58, 316, 418, 985
Lsp1109I GCAGC 1 cut(s) 978
LweI GCATC 5 cut(s) 40, 276, 311, 432, 567
MaeIII GTNAC 3 cut(s) 15, 563, 836
MalI GATC 2 cut(s) 736, 870
MbiI CCGCTC 1 cut(s) 319
MboI GATC 2 cut(s) 734, 868
MboII GAAGA 6 cut(s) 251, 662, 916, 919, 934, 1010
MhlI GDGCHC 3 cut(s) 43, 159, 234
MlsI TGGCCA 2 cut(s) 248, 765
MluCI AATT 3 cut(s) 191, 585, 596
MluNI TGGCCA 2 cut(s) 248, 765
MlyI GAGTC 1 cut(s) 833
MnlI CCTC 9 cut(s) 61, 235, 307, 349, 471, 622, 725, 766, 910
Mox20I TGGCCA 2 cut(s) 248, 765
Mph1103I ATGCAT 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 191
MscI TGGCCA 2 cut(s) 248, 765
MseI TTAA 3 cut(s) 402, 590, 711
Msp20I TGGCCA 2 cut(s) 248, 765
MspI CCGG 4 cut(s) 34, 416, 696, 994
MspR9I CCNGG 7 cut(s) 34, 35, 125, 383, 433, 661, 995
MvaI CCWGG 4 cut(s) 125, 383, 433, 661
MvnI CGCG 2 cut(s) 197, 546
MwoI GCNNNNNNNGC 5 cut(s) 114, 264, 427, 466, 629
NciI CCSGG 3 cut(s) 34, 35, 995
NdeI CATATG 1 cut(s) 292
NdeII GATC 2 cut(s) 734, 868
NlaIII CATG 6 cut(s) 167, 220, 460, 584, 785, 812
NlaIV GGNNCC 1 cut(s) 337
NmeAIII GCCGAG 2 cut(s) 578, 942
NmuCI GTSAC 2 cut(s) 15, 836
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 1 cut(s) 460
PasI CCCWGGG 1 cut(s) 124
PciSI GCTCTTC 2 cut(s) 902, 917
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 179, 616
PflFI GACNNNGTC 2 cut(s) 842, 1004
PflMI CCANNNNNTGG 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 2 cut(s) 87, 968
PleI GAGTC 1 cut(s) 833
PpsI GAGTC 1 cut(s) 833
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 4 cut(s) 123, 381, 431, 659
PspFI CCCAGC 2 cut(s) 57, 640
PspGI CCWGG 4 cut(s) 123, 381, 431, 659
PspN4I GGNNCC 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 427
PsyI GACNNNGTC 2 cut(s) 842, 1004
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SacI GAGCTC 1 cut(s) 159
SalI GTCGAC 1 cut(s) 147
SapI GCTCTTC 2 cut(s) 902, 917
SaqAI TTAA 3 cut(s) 402, 590, 711
SatI GCNGC 2 cut(s) 86, 967
Sau3AI GATC 2 cut(s) 734, 868
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 7 cut(s) 34, 35, 125, 383, 433, 661, 995
SduI GDGCHC 3 cut(s) 43, 159, 234
SfaNI GCATC 5 cut(s) 40, 276, 311, 432, 567
SmaI CCCGGG 1 cut(s) 35
Sse9I AATT 3 cut(s) 191, 585, 596
SsiI CCGC 4 cut(s) 85, 319, 544, 875
SspI AATATT 2 cut(s) 540, 850
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 7 cut(s) 32, 33, 123, 381, 431, 659, 993
TaaI ACNGT 2 cut(s) 146, 560
TaqI TCGA 2 cut(s) 148, 771
TaqII GACCGA 1 cut(s) 832
TasI AATT 3 cut(s) 191, 585, 596
TauI GCSGC 1 cut(s) 88
TfiI GAWTC 2 cut(s) 179, 616
Tru1I TTAA 3 cut(s) 402, 590, 711
Tru9I TTAA 3 cut(s) 402, 590, 711
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 2 cut(s) 15, 836
TseI GCWGC 1 cut(s) 966
Tsp45I GTSAC 2 cut(s) 15, 836
TspDTI ATGAA 2 cut(s) 252, 663
TspGWI ACGGA 1 cut(s) 324
TspMI CCCGGG 1 cut(s) 33
TspRI CASTG 1 cut(s) 124
Tth111I GACNNNGTC 2 cut(s) 842, 1004
Van91I CCANNNNNTGG 1 cut(s) 222
VneI GTGCAC 1 cut(s) 39
XapI RAATTY 3 cut(s) 191, 585, 596
XceI RCATGY 1 cut(s) 460
XmaI CCCGGG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.