Rw4G026700

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0014008
Physical Location & Seq
Reverse (-)
52927003 .. 52928468
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026700.1

Sequence Viewer

Length: 1104 bp
ATGAAGCTCGCTCACGTTTGCTCTCTACATGGAGTGCCCAAACTGCCCTATTCCTCCTTCGCAGCTGGCAACGGCAAAGTCGTTGCCTTTAATTCAAGACCATTCTCAGTGTGTGGCTTTTGTAGAACAGGTCATCGGAACAAAGTAGCTGCCGGTGGCATTGCCGTATCAGCAATGAGCAATGCCTACTGCACTGGATTCTGCAGCTTTCATCATAAAGCAGTGGAAATGCTGTCTTTGAGAAACATGTGTGGAAAAATATTTTTTAGGGCCTTTTCAACGTGCGCCTCACCGATGATCTCTACGAATTTTGCTCTGGTGATGCGTTCCCCATCGTCACTTGCGTTGGCTACCCGGGGTGCACTATCTGATGCTCCCCAGCGTTCAGAGGAGTGGTTTGCCTTGCGGCGAAACAAACTGACTACAAGCACCTTCAGCACTGCCCTGGGATTTTGGAAGGGAAACCGTCGACCTGAGCTCTGGCATGAGAAGGTATTTGATTCACAGAAAGAATTTGCGCAAGCTTCTAAAAATGCCATGCAATGGGGTGTGCTCAATGAAGATGTGGCCATAGAGCGGTATAAAAGCATCACAGGTCGTGAAGTGGGTACATATGGATTTGCATCCCACGGAGAGGAGCGGTTTGATTGGCTTGGTGCCTCCCCTGATGGTCTGCTTGATTGCTTTCAAGGTGGTGGTATCCTGGAAGTGAAGTGTCCTTTTAACAAGGGAAAACCGGAGCAGGGTCTGCCCTGGTCAACGATGCCTTTCTATTACATGCCTCAGGTGCAGGGTCAAATGGAGATAATGGATAGAGAGTGGGTTGATTTATATTGCTGGACACCAAATGGAAGCACAATATTCCGCGTGTGCAGAGACCGTAGTTACTGGGTCTTGATGCATGGAATTTTAAGGGAATTTTGGTGGGATAATGTGATTCCTGCTAAGGAGGCTCTTTTGCTGGGTAATGAAGAAAAGGCCAGGGAGTATATGCCAACTTCTACTCACAAAAAAACCGGCCTTGCAATCGTTAAGAGCTTGGAGTTAGCAAGAGGATCAAAGTTGCTGTGTAGGGAGATTGCTGGCCACATCGAGTTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
YqaJ

Protein Analysis

367

Amino Acids

41.26

Weight (kDa)

9.09

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 131 - 270 4.4e-23 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014008)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67660 AT1G67660
fragaria_vesca FvH4_4g24601
malus_domestica MD13G1109900.v1.1
prunus_persica Prupe.1G235100_v2.0.a1 Prupe.1G235100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0431611
rosa_laevigata RLG00000006904
rosa_multiflora Rmu_sc0031555.1_g000001
rosa_roxburghii Rroxscaffold_5G00373070
rosa_rugosa Rorug04G0251200 Rorug04G0251300
rosa_samantha Rh4AG308100 Rh4BG315700 Rh4CG331200 Rh4DG310500
rosa_wichuraiana Rw4G026700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 519
AccB1I GGYRCC 1 cut(s) 656
AccB7I CCANNNNNTGG 1 cut(s) 543
AccBSI CCGCTC 2 cut(s) 577, 640
AccI GTMKAC 1 cut(s) 469
AccII CGCG 1 cut(s) 867
AciI CCGC 4 cut(s) 406, 577, 640, 865
AclWI GGATC 1 cut(s) 1063
AcoI YGGCCR 2 cut(s) 567, 1084
AcsI RAATTY 4 cut(s) 307, 512, 906, 917
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 1 cut(s) 610
AfiI CCNNNNNNNGG 4 cut(s) 543, 576, 634, 743
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 96, 279, 689
AjnI CCWGG 4 cut(s) 444, 702, 752, 980
AluBI AGCT 7 cut(s) 7, 65, 149, 207, 478, 524, 1038
AluI AGCT 7 cut(s) 7, 65, 149, 207, 478, 524, 1038
Alw21I GWGCWC 3 cut(s) 364, 480, 555
Alw26I GTCTC 1 cut(s) 870
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 1 cut(s) 1063
AlwNI CAGNNNCTG 1 cut(s) 748
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 5 cut(s) 270, 567, 978, 1018, 1084
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 62, 149, 204
ApoI RAATTY 4 cut(s) 307, 512, 906, 917
AspLEI GCGC 2 cut(s) 287, 520
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 2 cut(s) 355, 356
AsuHPI GGTGA 2 cut(s) 282, 331
AvaI CYCGRG 1 cut(s) 354
AxyI CCTNAGG 1 cut(s) 783
BaeGI GKGCMC 2 cut(s) 39, 364
BalI TGGCCA 2 cut(s) 569, 1086
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 480
Bbv12I GWGCWC 3 cut(s) 364, 480, 555
BbvI GCAGC 3 cut(s) 74, 136, 216
BccI CCATC 2 cut(s) 340, 662
BceAI ACGGC 2 cut(s) 88, 149
BciT130I CCWGG 4 cut(s) 446, 704, 754, 982
BciVI GTATCC 1 cut(s) 710
BcnI CCSGG 2 cut(s) 355, 356
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 1 cut(s) 1102
BfmI CTRYAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 4 cut(s) 63, 150, 205, 407
BlsI GCNGC 4 cut(s) 64, 151, 206, 408
Bme1390I CCNGG 6 cut(s) 355, 356, 446, 704, 754, 982
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 658
BmrFI CCNGG 6 cut(s) 355, 356, 446, 704, 754, 982
BmrI ACTGGG 1 cut(s) 898
BmsI GCATC 6 cut(s) 312, 361, 597, 632, 753, 888
BmuI ACTGGG 1 cut(s) 898
Bpu10I CCTNAGC 2 cut(s) 474, 945
BpuMI CCSGG 2 cut(s) 355, 356
BsaBI GATNNNNATC 1 cut(s) 622
BsaI GGTCTC 1 cut(s) 870
BsaJI CCNNGG 7 cut(s) 354, 355, 444, 445, 628, 752, 981
BsaWI WCCGGW 1 cut(s) 736
Bsc4I CCNNNNNNNGG 4 cut(s) 543, 576, 634, 743
Bse118I RCCGGY 2 cut(s) 152, 1016
Bse1I ACTGG 2 cut(s) 199, 893
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 4 cut(s) 159, 180, 187, 548
Bse8I GATNNNNATC 1 cut(s) 622
BseBI CCWGG 4 cut(s) 446, 704, 754, 982
BseDI CCNNGG 7 cut(s) 354, 355, 444, 445, 628, 752, 981
BseGI GGATG 1 cut(s) 623
BseJI GATNNNNATC 1 cut(s) 622
BseLI CCNNNNNNNGG 4 cut(s) 543, 576, 634, 743
BseMI GCAATG 4 cut(s) 159, 180, 187, 548
BseMII CTCAG 3 cut(s) 120, 465, 797
BseNI ACTGG 2 cut(s) 199, 893
BseRI GAGGAG 2 cut(s) 404, 650
BseSI GKGCMC 2 cut(s) 39, 364
BseXI GCAGC 3 cut(s) 74, 136, 216
BseYI CCCAGC 2 cut(s) 378, 961
BsgI GTGCAG 3 cut(s) 175, 809, 892
Bsh1236I CGCG 1 cut(s) 867
BshFI GGCC 5 cut(s) 272, 569, 980, 1020, 1086
BshNI GGYRCC 1 cut(s) 656
BsiHKAI GWGCWC 3 cut(s) 364, 480, 555
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 4 cut(s) 153, 355, 737, 1017
BslI CCNNNNNNNGG 4 cut(s) 543, 576, 634, 743
BsmAI GTCTC 1 cut(s) 870
BsnI GGCC 5 cut(s) 272, 569, 980, 1020, 1086
Bso31I GGTCTC 1 cut(s) 870
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 4 cut(s) 39, 364, 480, 555
Bsp143I GATC 2 cut(s) 297, 1055
BspACI CCGC 4 cut(s) 406, 577, 640, 865
BspANI GGCC 5 cut(s) 272, 569, 980, 1020, 1086
BspCNI CTCAG 3 cut(s) 119, 466, 796
BspFNI CGCG 1 cut(s) 867
BspLI GGNNCC 1 cut(s) 658
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 1 cut(s) 1063
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 870
BsrBI CCGCTC 2 cut(s) 577, 640
BsrDI GCAATG 4 cut(s) 159, 180, 187, 548
BsrFI RCCGGY 2 cut(s) 152, 1016
BsrI ACTGG 2 cut(s) 199, 893
BssAI RCCGGY 2 cut(s) 152, 1016
BssECI CCNNGG 7 cut(s) 354, 355, 444, 445, 628, 752, 981
BssMI GATC 2 cut(s) 297, 1055
Bst2UI CCWGG 4 cut(s) 446, 704, 754, 982
Bst4CI ACNGT 2 cut(s) 467, 881
BstAPI GCANNNNNTGC 1 cut(s) 748
BstC8I GCNNGC 4 cut(s) 9, 67, 522, 1084
BstDEI CTNAG 4 cut(s) 106, 474, 783, 945
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 1 cut(s) 623
BstFNI CGCG 1 cut(s) 867
BstHHI GCGC 2 cut(s) 287, 520
BstKTI GATC 2 cut(s) 300, 1058
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 2 cut(s) 297, 1055
BstMWI GCNNNNNNNGC 6 cut(s) 43, 170, 435, 748, 787, 950
BstNI CCWGG 4 cut(s) 446, 704, 754, 982
BstNSI RCATGY 2 cut(s) 250, 781
BstSCI CCNGG 6 cut(s) 353, 354, 444, 702, 752, 980
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 2 cut(s) 39, 364
BstUI CGCG 1 cut(s) 867
BstV1I GCAGC 3 cut(s) 74, 136, 216
Bsu36I CCTNAGG 1 cut(s) 783
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 5 cut(s) 272, 569, 980, 1020, 1086
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 1 cut(s) 623
BtsI GCAGTG 2 cut(s) 228, 438
BtsIMutI CAGTG 4 cut(s) 114, 192, 228, 438
Cac8I GCNNGC 4 cut(s) 9, 67, 522, 1084
CaiI CAGNNNCTG 1 cut(s) 748
CfoI GCGC 2 cut(s) 287, 520
Cfr10I RCCGGY 2 cut(s) 152, 1016
Cfr13I GGNCC 1 cut(s) 270
Cfr9I CCCGGG 1 cut(s) 354
Csp6I GTAC 1 cut(s) 609
CviAII CATG 6 cut(s) 29, 247, 485, 538, 778, 902
CviQI GTAC 1 cut(s) 609
DdeI CTNAG 4 cut(s) 106, 474, 783, 945
DpnI GATC 2 cut(s) 299, 1057
DpnII GATC 2 cut(s) 297, 1055
EaeI YGGCCR 2 cut(s) 567, 1084
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 870
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 418
Eco81I CCTNAGG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 4 cut(s) 444, 702, 752, 980
EcoT22I ATGCAT 1 cut(s) 903
EcoT38I GRGCYC 1 cut(s) 480
FaeI CATG 6 cut(s) 32, 250, 488, 541, 781, 905
FatI CATG 6 cut(s) 28, 246, 484, 537, 777, 901
FauNDI CATATG 1 cut(s) 613
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 4 cut(s) 63, 150, 205, 407
FokI GGATG 1 cut(s) 610
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 4 cut(s) 63, 150, 205, 407
FspBI CTAG 1 cut(s) 1102
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 2 cut(s) 286, 519
GluI GCNGC 4 cut(s) 63, 150, 205, 407
GsaI CCCAGC 2 cut(s) 382, 965
HaeIII GGCC 5 cut(s) 272, 569, 980, 1020, 1086
HapII CCGG 4 cut(s) 153, 355, 737, 1017
HhaI GCGC 2 cut(s) 287, 520
Hin1II CATG 6 cut(s) 32, 250, 488, 541, 781, 905
Hin6I GCGC 2 cut(s) 285, 518
HinP1I GCGC 2 cut(s) 285, 518
HincII GTYRAC 2 cut(s) 470, 759
HindII GTYRAC 2 cut(s) 470, 759
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 3 cut(s) 198, 500, 937
HpaII CCGG 4 cut(s) 153, 355, 737, 1017
HphI GGTGA 2 cut(s) 282, 331
Hpy166II GTNNAC 3 cut(s) 362, 470, 759
Hpy188I TCNGA 3 cut(s) 138, 370, 388
Hpy188III TCNNGA 3 cut(s) 96, 599, 895
Hpy8I GTNNAC 3 cut(s) 362, 470, 759
Hpy99I CGWCG 1 cut(s) 471
HpyAV CCTTC 4 cut(s) 67, 442, 451, 484
HpyCH4III ACNGT 2 cut(s) 467, 881
HpyCH4IV ACGT 2 cut(s) 15, 281
HpyCH4V TGCA 9 cut(s) 192, 204, 362, 541, 623, 790, 873, 901, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 170, 435, 748, 787, 950
HpyF3I CTNAG 4 cut(s) 106, 474, 783, 945
HpySE526I ACGT 2 cut(s) 15, 281
Hsp92II CATG 6 cut(s) 32, 250, 488, 541, 781, 905
HspAI GCGC 2 cut(s) 285, 518
Kzo9I GATC 2 cut(s) 297, 1055
LmnI GCTCC 3 cut(s) 379, 637, 739
Lsp1109I GCAGC 3 cut(s) 74, 136, 216
LweI GCATC 6 cut(s) 312, 361, 597, 632, 753, 888
MaeI CTAG 1 cut(s) 1102
MaeII ACGT 2 cut(s) 15, 281
MaeIII GTNAC 2 cut(s) 336, 884
MalI GATC 2 cut(s) 299, 1057
MbiI CCGCTC 2 cut(s) 577, 640
MboI GATC 2 cut(s) 297, 1055
MboII GAAGA 2 cut(s) 572, 983
MhlI GDGCHC 4 cut(s) 39, 364, 480, 555
MlsI TGGCCA 2 cut(s) 569, 1086
MluCI AATT 5 cut(s) 91, 307, 512, 906, 917
MluNI TGGCCA 2 cut(s) 569, 1086
MnlI CCTC 8 cut(s) 64, 298, 382, 628, 670, 792, 943, 1046
Mox20I TGGCCA 2 cut(s) 569, 1086
Mph1103I ATGCAT 1 cut(s) 903
MscI TGGCCA 2 cut(s) 569, 1086
MseI TTAA 4 cut(s) 90, 723, 911, 1032
Msp20I TGGCCA 2 cut(s) 569, 1086
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 4 cut(s) 153, 355, 737, 1017
MspR9I CCNGG 6 cut(s) 355, 356, 446, 704, 754, 982
MvaI CCWGG 4 cut(s) 446, 704, 754, 982
MvnI CGCG 1 cut(s) 867
MwoI GCNNNNNNNGC 6 cut(s) 43, 170, 435, 748, 787, 950
NciI CCSGG 2 cut(s) 355, 356
NdeI CATATG 1 cut(s) 613
NdeII GATC 2 cut(s) 297, 1055
NlaIII CATG 6 cut(s) 32, 250, 488, 541, 781, 905
NlaIV GGNNCC 1 cut(s) 658
NmuCI GTSAC 1 cut(s) 336
NsbI TGCGCA 1 cut(s) 519
NsiI ATGCAT 1 cut(s) 903
NspI RCATGY 2 cut(s) 250, 781
PasI CCCWGGG 1 cut(s) 445
PciI ACATGT 1 cut(s) 246
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 341
PfeI GAWTC 3 cut(s) 198, 500, 937
PflMI CCANNNNNTGG 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 702
PkrI GCNGC 4 cut(s) 64, 151, 206, 408
PscI ACATGT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 4 cut(s) 444, 702, 752, 980
PspFI CCCAGC 2 cut(s) 378, 961
PspGI CCWGG 4 cut(s) 444, 702, 752, 980
PspN4I GGNNCC 1 cut(s) 658
PspPI GGNCC 1 cut(s) 270
PstI CTGCAG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 748
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 610
RsaNI GTAC 1 cut(s) 609
SacI GAGCTC 1 cut(s) 480
SalI GTCGAC 1 cut(s) 468
SaqAI TTAA 4 cut(s) 90, 723, 911, 1032
SatI GCNGC 4 cut(s) 63, 150, 205, 407
Sau3AI GATC 2 cut(s) 297, 1055
Sau96I GGNCC 1 cut(s) 270
ScrFI CCNGG 6 cut(s) 355, 356, 446, 704, 754, 982
SduI GDGCHC 4 cut(s) 39, 364, 480, 555
SfaNI GCATC 6 cut(s) 312, 361, 597, 632, 753, 888
SfcI CTRYAG 1 cut(s) 202
SmaI CCCGGG 1 cut(s) 356
Sse9I AATT 5 cut(s) 91, 307, 512, 906, 917
SsiI CCGC 4 cut(s) 406, 577, 640, 865
SspI AATATT 2 cut(s) 261, 861
SspMI CTAG 1 cut(s) 1102
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 6 cut(s) 353, 354, 444, 702, 752, 980
TaaI ACNGT 2 cut(s) 467, 881
TaiI ACGT 2 cut(s) 18, 284
TaqI TCGA 2 cut(s) 469, 1092
TasI AATT 5 cut(s) 91, 307, 512, 906, 917
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 3 cut(s) 198, 500, 937
Tru1I TTAA 4 cut(s) 90, 723, 911, 1032
Tru9I TTAA 4 cut(s) 90, 723, 911, 1032
TscAI CASTG 4 cut(s) 114, 199, 228, 445
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 3 cut(s) 62, 149, 204
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 4 cut(s) 17, 200, 573, 984
TspGWI ACGGA 1 cut(s) 645
TspMI CCCGGG 1 cut(s) 354
TspRI CASTG 4 cut(s) 114, 199, 228, 445
Van91I CCANNNNNTGG 1 cut(s) 543
VneI GTGCAC 1 cut(s) 360
XapI RAATTY 4 cut(s) 307, 512, 906, 917
XceI RCATGY 2 cut(s) 250, 781
XmaI CCCGGG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 1 cut(s) 1102
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.