AT1G68110

clathrin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012835
Physical Location & Seq
Forward (+)
25524718 .. 25526150
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68110.1

Sequence Viewer

Length: 1140 bp
ATGAAGCTGTGGAAACGAGCTGCCGCCGCAATCAAAGACCGGAAAAGCTTACTAGCCGTTGGTTTCTCACGGCGAAACAGCTCTTACCGGAACGCAGATCTCGAAGCAGCTATCATCAAAGCCACCTCCCACGACGATTCCTCCGTCGACTATTCCAACGCTCACCGTGTCTACAAATGGATCCGTTCTTCTCCTCTTAATCTCAAGACTCTCGTCTACGCAATCTCTTCTCGCGTTAACCACACGCGTAGCTGGATCGTTGCTCTTAAATCCTTAATGCTTCTTCATGGTGTTCTCTGTTGTAAAGTACCTTCCGTTGTCGGAGAGTTTCGTCGTCTTCCTTTCGATCTTTCAGATTTCTCCGATGGTCATTCTTGTCTTAGCAAGACTTGGGGATTCAACGTCTTTGTTCGAACTTACTTCGCTTTTCTTCATCATTACTCTTCCTTCTTGTCCGATCAGATTCATCGTCTCCGTGGTAACAACAGAAGATCGTTGGAGAAGACATCTGATTCTGTTATCCAAGAGCTTGAACGGATTCAGAAACTCCAGTCTCTCCTAGATATGATTCTTCAGATTCGACCTGTTGCTGACAACATGAAGAAGACTTTGATCTTAGAAGCTATGGATTGTCTCGTCATCGAAAGTATCAACATCTACGGTAGAATTTGCGGCGCGGTTATGAAAGTCCTTCCGTTGGCTGGAAAATCAGAGGCTGCAACGGTTTTGAAAATCGTCAACAAGACCACATCTCAGGGAGAAGATCTCATCGTCTATTTCGAATTCTGCAAAGGTTTCGGTGTCTCGAACGCTCGAGAAATCCCTCAATTCGTTAGGATACCGGAGGAGGAAGTTGAAGCAATCGAGAAAATGATCGATACCGTCCAAGAGAAGCCGAAGCTAGAGAAGGACGAAGAAAAAGAGGATGAGAAAGCTATGGTGGTGTTGGAGCAGCCGAAGAAGCTGCAGACGATCATCACGGACAAATGGGAGATTTTCGAAGACGATTATCGGTGTTTCGATAGAAAAGACAAATGGGAGATTTTCGAAGACGAATATCATCAAAATCATCTGCCTCTTATAACAATGAACCAACCAGTTTACATCACTTATACAATGCCAGATTTGATTACATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

379

Amino Acids

43.84

Weight (kDa)

7.61

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANTH PF07651 33 - 293 1.4e-74 ANTH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25240 AT1G25240 AT1G68110
fragaria_vesca FvH4_4g26150
malus_domestica MD13G1015400.v1.1 MD16G1012900.v1.1
prunus_persica Prupe.1G338400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433721
rosa_laevigata RLG00000006735
rosa_multiflora Rmu_co8405197.1_g000001 Rmu_sc0000312.1_g000027
rosa_roxburghii Rroxscaffold_5G00375160
rosa_rugosa Rorug04G0271200.1
rosa_samantha Rh4AG325500 Rh4BG333300 Rh4CG348500 Rh4DG329900
rosa_wichuraiana Rw4G028190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AccI GTMKAC 3 cut(s) 147, 171, 216
AccII CGCG 3 cut(s) 234, 247, 677
AciI CCGC 4 cut(s) 24, 27, 672, 677
AclWI GGATC 3 cut(s) 175, 188, 263
AcsI RAATTY 2 cut(s) 666, 782
AcuI CTGAAG 1 cut(s) 557
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 697, 701
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 4 cut(s) 400, 533, 730, 857
Alw26I GTCTC 4 cut(s) 476, 558, 638, 808
AlwI GGATC 3 cut(s) 175, 188, 263
AlwNI CAGNNNCTG 1 cut(s) 716
Ama87I CYCGRG 1 cut(s) 813
ApeKI GCWGC 5 cut(s) 20, 107, 716, 952, 964
ApoI RAATTY 2 cut(s) 666, 782
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 4 cut(s) 412, 780, 999, 1047
AvaI CYCGRG 1 cut(s) 813
BamHI GGATCC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BbsI GAAGAC 5 cut(s) 329, 509, 611, 1008, 1056
BbvI GCAGC 5 cut(s) 7, 119, 703, 951, 964
BccI CCATC 1 cut(s) 359
BceAI ACGGC 2 cut(s) 41, 86
BcgI CGANNNNNNTGC 4 cut(s) 778, 812, 946, 980
BciVI GTATCC 1 cut(s) 831
BcoDI GTCTC 4 cut(s) 476, 558, 638, 808
BfaI CTAG 4 cut(s) 53, 560, 902, 1138
BfmI CTRYAG 1 cut(s) 965
BfuI GTATCC 1 cut(s) 831
BglII AGATCT 2 cut(s) 97, 763
BisI GCNGC 8 cut(s) 21, 24, 27, 108, 673, 717, 953, 965
BlsI GCNGC 8 cut(s) 22, 25, 28, 109, 674, 718, 954, 966
BmeT110I CYCGRG 1 cut(s) 813
BmiI GGNNCC 1 cut(s) 182
BoxI GACNNNNGTC 1 cut(s) 212
BpiI GAAGAC 5 cut(s) 329, 509, 611, 1008, 1056
BplI GAGNNNNNCTC 2 cut(s) 750, 782
BpmI CTGGAG 1 cut(s) 533
Bpu14I TTCGAA 4 cut(s) 412, 780, 999, 1047
BpuEI CTTGAG 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 876
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 3 cut(s) 39, 87, 841
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 697, 701
Bse1I ACTGG 2 cut(s) 550, 1097
BseCI ATCGAT 1 cut(s) 876
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 1 cut(s) 931
BseLI CCNNNNNNNGG 2 cut(s) 697, 701
BseMII CTCAG 1 cut(s) 767
BseNI ACTGG 2 cut(s) 550, 1097
BseRI GAGGAG 2 cut(s) 183, 860
BseXI GCAGC 5 cut(s) 7, 119, 703, 951, 964
Bsh1236I CGCG 3 cut(s) 234, 247, 677
BshVI ATCGAT 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 813
BsiSI CCGG 3 cut(s) 40, 88, 842
BslI CCNNNNNNNGG 2 cut(s) 697, 701
BsmAI GTCTC 4 cut(s) 476, 558, 638, 808
BsmBI CGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 813
Bsp119I TTCGAA 4 cut(s) 412, 780, 999, 1047
BspACI CCGC 4 cut(s) 24, 27, 672, 677
BspCNI CTCAG 1 cut(s) 766
BspDI ATCGAT 1 cut(s) 876
BspFNI CGCG 3 cut(s) 234, 247, 677
BspLI GGNNCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 969
BspPI GGATC 3 cut(s) 175, 188, 263
BspT104I TTCGAA 4 cut(s) 412, 780, 999, 1047
BsrI ACTGG 2 cut(s) 550, 1097
BssECI CCNNGG 1 cut(s) 475
Bst4CI ACNGT 4 cut(s) 167, 662, 724, 883
Bst6I CTCTTC 2 cut(s) 232, 448
BstBI TTCGAA 4 cut(s) 412, 780, 999, 1047
BstDEI CTNAG 3 cut(s) 380, 616, 753
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 1 cut(s) 931
BstFNI CGCG 3 cut(s) 234, 247, 677
BstHHI GCGC 1 cut(s) 677
BstMAI GTCTC 4 cut(s) 476, 558, 638, 808
BstMWI GCNNNNNNNGC 2 cut(s) 26, 961
BstPAI GACNNNNGTC 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 965
BstUI CGCG 3 cut(s) 234, 247, 677
BstV1I GCAGC 5 cut(s) 7, 119, 703, 951, 964
BstV2I GAAGAC 5 cut(s) 329, 509, 611, 1008, 1056
BstX2I RGATCY 3 cut(s) 97, 180, 763
BstYI RGATCY 3 cut(s) 97, 180, 763
Bsu15I ATCGAT 1 cut(s) 876
BsuI GTATCC 1 cut(s) 831
BsuTUI ATCGAT 1 cut(s) 876
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 1 cut(s) 931
CaiI CAGNNNCTG 1 cut(s) 716
CfoI GCGC 1 cut(s) 677
ClaI ATCGAT 1 cut(s) 876
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 287, 598
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 3 cut(s) 380, 616, 753
Eam1104I CTCTTC 2 cut(s) 232, 448
EarI CTCTTC 2 cut(s) 232, 448
Eco57I CTGAAG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 782
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 2 cut(s) 290, 601
FaiI YATR 8 cut(s) 288, 566, 599, 626, 683, 938, 1082, 1113
FatI CATG 2 cut(s) 286, 597
FblI GTMKAC 3 cut(s) 147, 171, 216
Fnu4HI GCNGC 8 cut(s) 21, 24, 27, 108, 673, 717, 953, 965
FokI GGATG 1 cut(s) 938
Fsp4HI GCNGC 8 cut(s) 21, 24, 27, 108, 673, 717, 953, 965
FspBI CTAG 4 cut(s) 53, 560, 902, 1138
GlaI GCGC 1 cut(s) 676
GluI GCNGC 8 cut(s) 21, 24, 27, 108, 673, 717, 953, 965
GsuI CTGGAG 1 cut(s) 533
HapII CCGG 3 cut(s) 40, 88, 842
HhaI GCGC 1 cut(s) 677
Hin1II CATG 2 cut(s) 290, 601
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 3 cut(s) 148, 238, 739
HindII GTYRAC 3 cut(s) 148, 238, 739
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 8 cut(s) 137, 208, 396, 463, 512, 538, 568, 577
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 3 cut(s) 40, 88, 842
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 6 cut(s) 148, 172, 217, 238, 739, 1102
Hpy188I TCNGA 9 cut(s) 323, 355, 364, 457, 462, 511, 543, 576, 712
Hpy188III TCNNGA 5 cut(s) 101, 205, 805, 815, 865
Hpy8I GTNNAC 6 cut(s) 148, 172, 217, 238, 739, 1102
Hpy99I CGWCG 3 cut(s) 137, 149, 336
HpyAV CCTTC 4 cut(s) 321, 457, 701, 901
HpyCH4III ACNGT 4 cut(s) 167, 662, 724, 883
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 3 cut(s) 719, 789, 967
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 961
HpyF3I CTNAG 3 cut(s) 380, 616, 753
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 2 cut(s) 290, 601
HspAI GCGC 1 cut(s) 675
KspAI GTTAAC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 949
Lsp1109I GCAGC 5 cut(s) 7, 119, 703, 951, 964
MaeI CTAG 4 cut(s) 53, 560, 902, 1138
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 479
MflI RGATCY 3 cut(s) 97, 180, 763
MluCI AATT 3 cut(s) 666, 782, 827
MluI ACGCGT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 4 cut(s) 180, 301, 477, 927
MnlI CCTC 9 cut(s) 136, 151, 204, 706, 834, 838, 841, 916, 1086
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 4 cut(s) 198, 237, 267, 275
MspI CCGG 3 cut(s) 40, 88, 842
MvnI CGCG 3 cut(s) 234, 247, 677
MwoI GCNNNNNNNGC 2 cut(s) 26, 961
NlaIII CATG 2 cut(s) 290, 601
NlaIV GGNNCC 1 cut(s) 182
NspV TTCGAA 4 cut(s) 412, 780, 999, 1047
PaeR7I CTCGAG 1 cut(s) 813
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 141, 777
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 7 cut(s) 137, 396, 463, 512, 538, 568, 577
PkrI GCNGC 8 cut(s) 22, 25, 28, 109, 674, 718, 954, 966
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 1082
PspN4I GGNNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 969
PstNI CAGNNNCTG 1 cut(s) 716
PsuI RGATCY 3 cut(s) 97, 180, 763
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SalI GTCGAC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 198, 237, 267, 275
SatI GCNGC 8 cut(s) 21, 24, 27, 108, 673, 717, 953, 965
SchI GAGTC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 965
Sfr274I CTCGAG 1 cut(s) 813
SfuI TTCGAA 4 cut(s) 412, 780, 999, 1047
SlaI CTCGAG 1 cut(s) 813
SmlI CTYRAG 2 cut(s) 203, 813
SmoI CTYRAG 2 cut(s) 203, 813
Sse9I AATT 3 cut(s) 666, 782, 827
SsiI CCGC 4 cut(s) 24, 27, 672, 677
SspMI CTAG 4 cut(s) 53, 560, 902, 1138
TaaI ACNGT 4 cut(s) 167, 662, 724, 883
TaiI ACGT 1 cut(s) 405
TasI AATT 3 cut(s) 666, 782, 827
TauI GCSGC 3 cut(s) 26, 29, 675
TfiI GAWTC 7 cut(s) 137, 396, 463, 512, 538, 568, 577
Tru1I TTAA 4 cut(s) 198, 237, 267, 275
Tru9I TTAA 4 cut(s) 198, 237, 267, 275
TseI GCWGC 5 cut(s) 20, 107, 716, 952, 964
TspDTI ATGAA 7 cut(s) 17, 275, 422, 455, 614, 698, 1103
TspGWI ACGGA 7 cut(s) 133, 173, 304, 464, 550, 684, 995
XapI RAATTY 2 cut(s) 666, 782
XhoI CTCGAG 1 cut(s) 813
XmiI GTMKAC 3 cut(s) 147, 171, 216
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 4 cut(s) 53, 560, 902, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.