Prupe.1G338400_v2.0.a1

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012835
Physical Location & Seq
Forward (+)
31874083 .. 31875887
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G338400.1

Sequence Viewer

Length: 1332 bp
ATGAAAATGAAACTCTGGAAAAAGGCTGCCGGGCTTATCAAAGACCGGAACAGCATATGGGTGGCCAGCATCTCCAGACGGACCTCGTACCGGAACCCGGATCTCGAGGCCATCATCATCAAGGCCACCAGCCACGACGAAACCCACGTCGATTACAAGAACTTCCATAGAGTCTACCAATGGGTTCGCACATCTCCTCTCTACCTCAAGCCCCTCCTTTGGGCTCTCTCTACCCGCATGGCCAAGACTCGCTCTTGGGTTGTCGCTCTCAAAGGCCTCATGCTCATGCACGGCGTTTTCTGTTGCAAAATCCCATCCGTTCAGAAGATTGGCAGGCTGCCTTTTGATCTCTCCAATTTCTCCGACGGCCATTCCAAGTCCGCCAAAATATGGGCTTGTGATCCCCTGGTTCGCGCCTATTTTACATATTTGGACCAAAGATCCGCCTTTTTTAGTACGTTGGTGATCAAGAAGAACAAGGGCGATCAGGAGGAGCCTGCATTGTTGGAAGAGCTCGGGAGATTGCAAAAGTGGCAATCTTTGCTTGACATCCTTCTTCAGATCAAACCAGAGCTGAACTTGACGATCAGCACTCATAACAACAACAACAGCAACACCACCACCAACAACAAGGTTTATCTCATTTCCGAAGCCATGATTTGTTTGCTCACAGAGATCTTCGACGTGTATAGCAGGGTTTGCAAAGGGATCGCCCGAACGCTTTTGAAGATATACGCGGCTCCTGGCAAGCAACAGGCACAGCTAGCGCTTGGGGTTGTTCAGAAGGCAGCAGTTCAAGGAGAGGATCTCTCCTTGTACCTTGAATTTTGCACGGAATTGGGCATCCTCAGCGCCACGGATTGTCCTAAAGTTGAGCAGATTCCGGAAGAAGATATTAGAGACCTCCAACGGATAATCAATGAAGCTTCAGTGAGAAACGAAAACAGAGACGTGAAAAATGGTGTTGTCGATCATGCACAGGAGGAGGAGGAGGAGGACAAGGCCATTGTGATGATGAGACAAAGAGAAAGCAGCAGGGGTAGAAATAAAATACTGGTTTATGATCAGCAGCAAACGGCATCAAAGAGGGCCTTCCAGACAATCATCACAGACAAATGGGAGGTGTTTGAAGAAGATTTGATCAGCTGGGTCAGCGTAGATACGACTGGTTTCTCTGATGTGAGCGGCAATATCACTATTACAACAAGTACGCCGAGTAGTGCTGTGGGTGCACAATACAGAAACCCTTTTGCTGCAGCCTCTTCAAATATGATGATACCTTATAATGCACCTGCACATAACCAAGTTCTTCCAGATTTGATTAGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

444

Amino Acids

50.23

Weight (kDa)

8.51

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012835)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25240 AT1G25240 AT1G68110
fragaria_vesca FvH4_4g26150
malus_domestica MD13G1015400.v1.1 MD16G1012900.v1.1
prunus_persica Prupe.1G338400_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0433721
rosa_laevigata RLG00000006735
rosa_multiflora Rmu_co8405197.1_g000001 Rmu_sc0000312.1_g000027
rosa_roxburghii Rroxscaffold_5G00375160
rosa_rugosa Rorug04G0271200.1
rosa_samantha Rh4AG325500 Rh4BG333300 Rh4CG348500 Rh4DG329900
rosa_wichuraiana Rw4G028190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1284
AarI CACCTGC 1 cut(s) 1300
Acc36I ACCTGC 1 cut(s) 1300
AccB7I CCANNNNNTGG 1 cut(s) 390
AccBSI CCGCTC 1 cut(s) 1185
AccI GTMKAC 1 cut(s) 174
AccII CGCG 2 cut(s) 414, 737
AccIII TCCGGA 1 cut(s) 883
AciI CCGC 5 cut(s) 235, 381, 444, 737, 1185
AclWI GGATC 5 cut(s) 108, 395, 435, 716, 813
AcoI YGGCCR 3 cut(s) 63, 240, 367
AcsI RAATTY 1 cut(s) 824
AcuI CTGAAG 2 cut(s) 542, 912
AfaI GTAC 4 cut(s) 89, 457, 818, 1210
AfeI AGCGCT 1 cut(s) 768
AfiI CCNNNNNNNGG 5 cut(s) 90, 97, 219, 220, 390
AflIII ACRYGT 1 cut(s) 684
AgsI TTSAA 5 cut(s) 727, 797, 824, 1130, 1266
AjiI CACGTC 3 cut(s) 148, 685, 952
AjnI CCWGG 2 cut(s) 405, 742
AluBI AGCT 5 cut(s) 514, 574, 763, 926, 1146
AluI AGCT 5 cut(s) 514, 574, 763, 926, 1146
Alw21I GWGCWC 2 cut(s) 516, 1234
Alw26I GTCTC 3 cut(s) 894, 942, 1012
Alw44I GTGCAC 1 cut(s) 1230
AlwI GGATC 5 cut(s) 108, 395, 435, 716, 813
Ama87I CYCGRG 2 cut(s) 104, 515
Aor13HI TCCGGA 1 cut(s) 883
Aor51HI AGCGCT 1 cut(s) 768
AoxI GGCC 8 cut(s) 63, 108, 123, 240, 274, 367, 1002, 1089
ApaLI GTGCAC 1 cut(s) 1230
ApeKI GCWGC 7 cut(s) 26, 337, 788, 1032, 1069, 1253, 1256
ApoI RAATTY 1 cut(s) 824
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 3 cut(s) 416, 769, 854
AspS9I GGNCC 3 cut(s) 81, 433, 1089
AsuC2I CCSGG 2 cut(s) 31, 98
AsuHPI GGTGA 1 cut(s) 475
AsuNHI GCTAGC 1 cut(s) 763
AvaI CYCGRG 2 cut(s) 104, 515
AvaII GGWCC 2 cut(s) 81, 433
BaeGI GKGCMC 1 cut(s) 1234
BalI TGGCCA 2 cut(s) 65, 242
BanII GRGCYC 2 cut(s) 226, 516
Bbv12I GWGCWC 2 cut(s) 516, 1234
BbvCI CCTCAGC 1 cut(s) 848
BbvI GCAGC 7 cut(s) 13, 324, 800, 1044, 1081, 1240, 1268
BccI CCATC 2 cut(s) 119, 322
BceAI ACGGC 3 cut(s) 307, 382, 1092
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 2 cut(s) 407, 744
BclI TGATCA 3 cut(s) 465, 1063, 1140
BcnI CCSGG 2 cut(s) 31, 98
BcoDI GTCTC 3 cut(s) 894, 942, 1012
BfaI CTAG 1 cut(s) 764
BfmI CTRYAG 1 cut(s) 1254
BfoI RGCGCY 2 cut(s) 770, 855
BfuAI ACCTGC 1 cut(s) 1300
BglII AGATCT 1 cut(s) 675
BisI GCNGC 9 cut(s) 27, 338, 738, 789, 1033, 1070, 1186, 1254, 1257
BlsI GCNGC 9 cut(s) 28, 339, 739, 790, 1034, 1071, 1187, 1255, 1258
Bme1390I CCNGG 4 cut(s) 31, 98, 407, 744
Bme18I GGWCC 2 cut(s) 81, 433
BmeT110I CYCGRG 2 cut(s) 104, 515
BmgBI CACGTC 3 cut(s) 148, 685, 952
BmgT120I GGNCC 3 cut(s) 81, 433, 1089
BmiI GGNNCC 3 cut(s) 95, 495, 741
BmrFI CCNGG 4 cut(s) 31, 98, 407, 744
BmsI GCATC 3 cut(s) 78, 852, 1088
BmtI GCTAGC 1 cut(s) 767
BplI GAGNNNNNCTC 4 cut(s) 792, 824, 794, 826
BpmI CTGGAG 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 31, 98
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 2 cut(s) 405, 855
BsaWI WCCGGW 3 cut(s) 45, 90, 883
Bsc4I CCNNNNNNNGG 5 cut(s) 90, 97, 219, 220, 390
Bse1I ACTGG 2 cut(s) 1059, 1171
BseAI TCCGGA 1 cut(s) 883
BseBI CCWGG 2 cut(s) 407, 744
BseDI CCNNGG 2 cut(s) 405, 855
BseGI GGATG 3 cut(s) 314, 549, 843
BseLI CCNNNNNNNGG 5 cut(s) 90, 97, 219, 220, 390
BseMII CTCAG 1 cut(s) 862
BseNI ACTGG 2 cut(s) 1059, 1171
BseRI GAGGAG 6 cut(s) 186, 506, 998, 1001, 1004, 1007
BseSI GKGCMC 1 cut(s) 1234
BseXI GCAGC 7 cut(s) 13, 324, 800, 1044, 1081, 1240, 1268
BseYI CCCAGC 1 cut(s) 1146
BsgI GTGCAG 1 cut(s) 1278
Bsh1236I CGCG 2 cut(s) 414, 737
BshFI GGCC 8 cut(s) 65, 110, 125, 242, 276, 369, 1004, 1091
BsiHKAI GWGCWC 2 cut(s) 516, 1234
BsiHKCI CYCGRG 2 cut(s) 104, 515
BsiSI CCGG 5 cut(s) 30, 46, 91, 98, 884
BslI CCNNNNNNNGG 5 cut(s) 90, 97, 219, 220, 390
BsmAI GTCTC 3 cut(s) 894, 942, 1012
BsmBI CGTCTC 1 cut(s) 942
BsnI GGCC 8 cut(s) 65, 110, 125, 242, 276, 369, 1004, 1091
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 2 cut(s) 104, 515
Bsp1286I GDGCHC 3 cut(s) 226, 516, 1234
Bsp13I TCCGGA 1 cut(s) 883
BspACI CCGC 5 cut(s) 235, 381, 444, 737, 1185
BspANI GGCC 8 cut(s) 65, 110, 125, 242, 276, 369, 1004, 1091
BspCNI CTCAG 1 cut(s) 861
BspEI TCCGGA 1 cut(s) 883
BspFNI CGCG 2 cut(s) 414, 737
BspLI GGNNCC 3 cut(s) 95, 495, 741
BspMAI CTGCAG 1 cut(s) 1258
BspMI ACCTGC 1 cut(s) 1300
BspOI GCTAGC 1 cut(s) 767
BspPI GGATC 5 cut(s) 108, 395, 435, 716, 813
BspQI GCTCTTC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 894
BsrBI CCGCTC 1 cut(s) 1185
BsrI ACTGG 2 cut(s) 1059, 1171
BssECI CCNNGG 2 cut(s) 405, 855
Bst2UI CCWGG 2 cut(s) 407, 744
Bst6I CTCTTC 2 cut(s) 504, 1267
BstAPI GCANNNNNTGC 2 cut(s) 541, 699
BstC8I GCNNGC 5 cut(s) 67, 335, 498, 749, 765
BstDEI CTNAG 1 cut(s) 848
BstDSI CCRYGG 1 cut(s) 855
BstF5I GGATG 3 cut(s) 314, 549, 843
BstFNI CGCG 2 cut(s) 414, 737
BstH2I RGCGCY 2 cut(s) 770, 855
BstHHI GCGC 3 cut(s) 416, 769, 854
BstMAI GTCTC 3 cut(s) 894, 942, 1012
BstMWI GCNNNNNNNGC 7 cut(s) 532, 541, 699, 764, 849, 1152, 1229
BstNI CCWGG 2 cut(s) 407, 744
BstSCI CCNGG 4 cut(s) 29, 96, 405, 742
BstSFI CTRYAG 1 cut(s) 1254
BstSLI GKGCMC 1 cut(s) 1234
BstUI CGCG 2 cut(s) 414, 737
BstV1I GCAGC 7 cut(s) 13, 324, 800, 1044, 1081, 1240, 1268
BstX2I RGATCY 4 cut(s) 100, 440, 675, 805
BstYI RGATCY 4 cut(s) 100, 440, 675, 805
BsuRI GGCC 8 cut(s) 65, 110, 125, 242, 276, 369, 1004, 1091
BtgI CCRYGG 1 cut(s) 855
BtrI CACGTC 3 cut(s) 148, 685, 952
BtsCI GGATG 3 cut(s) 314, 549, 843
BtsIMutI CAGTG 1 cut(s) 936
BveI ACCTGC 1 cut(s) 1300
Cac8I GCNNGC 5 cut(s) 67, 335, 498, 749, 765
CfoI GCGC 3 cut(s) 416, 769, 854
Cfr13I GGNCC 3 cut(s) 81, 433, 1089
Csp6I GTAC 4 cut(s) 88, 456, 817, 1209
CviAII CATG 5 cut(s) 238, 280, 286, 655, 974
CviQI GTAC 4 cut(s) 88, 456, 817, 1209
DdeI CTNAG 1 cut(s) 848
EaeI YGGCCR 3 cut(s) 63, 240, 367
Eam1104I CTCTTC 2 cut(s) 504, 1267
EarI CTCTTC 2 cut(s) 504, 1267
EciI GGCGGA 2 cut(s) 370, 433
Ecl136II GAGCTC 1 cut(s) 514
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 226, 516
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 81, 433
Eco47III AGCGCT 1 cut(s) 768
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 2 cut(s) 542, 912
Eco88I CYCGRG 2 cut(s) 104, 515
EcoICRI GAGCTC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 1089
EcoRII CCWGG 2 cut(s) 405, 742
EcoT38I GRGCYC 2 cut(s) 226, 516
Esp3I CGTCTC 1 cut(s) 942
FaeI CATG 5 cut(s) 241, 283, 289, 658, 977
FalI AAGNNNNNCTT 2 cut(s) 1076, 1108
FatI CATG 5 cut(s) 237, 279, 285, 654, 973
FauI CCCGC 1 cut(s) 242
FauNDI CATATG 1 cut(s) 56
FbaI TGATCA 3 cut(s) 465, 1063, 1140
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 9 cut(s) 27, 338, 738, 789, 1033, 1070, 1186, 1254, 1257
FokI GGATG 3 cut(s) 301, 536, 830
FriOI GRGCYC 2 cut(s) 226, 516
Fsp4HI GCNGC 9 cut(s) 27, 338, 738, 789, 1033, 1070, 1186, 1254, 1257
FspBI CTAG 1 cut(s) 764
GlaI GCGC 3 cut(s) 415, 768, 853
GluI GCNGC 9 cut(s) 27, 338, 738, 789, 1033, 1070, 1186, 1254, 1257
GsaI CCCAGC 1 cut(s) 1150
GsuI CTGGAG 1 cut(s) 58
HaeII RGCGCY 2 cut(s) 770, 855
HaeIII GGCC 8 cut(s) 65, 110, 125, 242, 276, 369, 1004, 1091
HapII CCGG 5 cut(s) 30, 46, 91, 98, 884
HhaI GCGC 3 cut(s) 416, 769, 854
Hin1II CATG 5 cut(s) 241, 283, 289, 658, 977
Hin6I GCGC 3 cut(s) 414, 767, 852
HinP1I GCGC 3 cut(s) 414, 767, 852
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 3 cut(s) 171, 247, 880
HpaII CCGG 5 cut(s) 30, 46, 91, 98, 884
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 2 cut(s) 175, 1232
Hpy188I TCNGA 7 cut(s) 324, 364, 561, 649, 783, 1177, 1331
Hpy188III TCNNGA 9 cut(s) 16, 75, 104, 469, 488, 517, 884, 1096, 1313
Hpy8I GTNNAC 2 cut(s) 175, 1232
Hpy99I CGWCG 4 cut(s) 140, 152, 368, 686
HpyAV CCTTC 3 cut(s) 563, 778, 1102
HpyCH4IV ACGT 4 cut(s) 147, 458, 684, 951
HpyF10VI GCNNNNNNNGC 7 cut(s) 532, 541, 699, 764, 849, 1152, 1229
HpyF3I CTNAG 1 cut(s) 848
HpySE526I ACGT 4 cut(s) 147, 458, 684, 951
Hsp92II CATG 5 cut(s) 241, 283, 289, 658, 977
HspAI GCGC 3 cut(s) 414, 767, 852
Kpn2I TCCGGA 1 cut(s) 883
Ksp22I TGATCA 3 cut(s) 465, 1063, 1140
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 493, 745
Lsp1109I GCAGC 7 cut(s) 13, 324, 800, 1044, 1081, 1240, 1268
LweI GCATC 3 cut(s) 78, 852, 1088
MaeI CTAG 1 cut(s) 764
MaeII ACGT 4 cut(s) 147, 458, 684, 951
MbiI CCGCTC 1 cut(s) 1185
MflI RGATCY 4 cut(s) 100, 440, 675, 805
MhlI GDGCHC 3 cut(s) 226, 516, 1234
MlsI TGGCCA 2 cut(s) 65, 242
MluCI AATT 3 cut(s) 355, 824, 836
MluNI TGGCCA 2 cut(s) 65, 242
MlyI GAGTC 2 cut(s) 180, 241
MmeI TCCRAC 3 cut(s) 387, 486, 931
Mox20I TGGCCA 2 cut(s) 65, 242
MroI TCCGGA 1 cut(s) 883
MscI TGGCCA 2 cut(s) 65, 242
MslI CAYNNNNRTG 3 cut(s) 59, 284, 1010
Msp20I TGGCCA 2 cut(s) 65, 242
MspA1I CMGCKG 1 cut(s) 1146
MspI CCGG 5 cut(s) 30, 46, 91, 98, 884
MspR9I CCNGG 4 cut(s) 31, 98, 407, 744
MvaI CCWGG 2 cut(s) 407, 744
MvnI CGCG 2 cut(s) 414, 737
MwoI GCNNNNNNNGC 7 cut(s) 532, 541, 699, 764, 849, 1152, 1229
NciI CCSGG 2 cut(s) 31, 98
NdeI CATATG 1 cut(s) 56
NheI GCTAGC 1 cut(s) 763
NlaIII CATG 5 cut(s) 241, 283, 289, 658, 977
NlaIV GGNNCC 3 cut(s) 95, 495, 741
NmeAIII GCCGAG 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 1300
PceI AGGCCT 1 cut(s) 276
PciSI GCTCTTC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 1 cut(s) 880
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 9 cut(s) 28, 339, 739, 790, 1034, 1071, 1187, 1255, 1258
PleI GAGTC 2 cut(s) 179, 241
PpsI GAGTC 2 cut(s) 179, 241
PsiI TTATAA 1 cut(s) 1284
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 405, 742
PspFI CCCAGC 1 cut(s) 1146
PspGI CCWGG 2 cut(s) 405, 742
PspN4I GGNNCC 3 cut(s) 95, 495, 741
PspPI GGNCC 3 cut(s) 81, 433, 1089
PstI CTGCAG 1 cut(s) 1258
PsuI RGATCY 4 cut(s) 100, 440, 675, 805
PvuII CAGCTG 1 cut(s) 1146
RsaI GTAC 4 cut(s) 89, 457, 818, 1210
RsaNI GTAC 4 cut(s) 88, 456, 817, 1209
RseI CAYNNNNRTG 3 cut(s) 59, 284, 1010
SacI GAGCTC 1 cut(s) 516
SapI GCTCTTC 1 cut(s) 504
SatI GCNGC 9 cut(s) 27, 338, 738, 789, 1033, 1070, 1186, 1254, 1257
Sau96I GGNCC 3 cut(s) 81, 433, 1089
SchI GAGTC 2 cut(s) 180, 241
ScrFI CCNGG 4 cut(s) 31, 98, 407, 744
SduI GDGCHC 3 cut(s) 226, 516, 1234
SfaNI GCATC 3 cut(s) 78, 852, 1088
SfcI CTRYAG 1 cut(s) 1254
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 81, 433
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 3 cut(s) 59, 284, 1010
SmlI CTYRAG 2 cut(s) 104, 206
SmoI CTYRAG 2 cut(s) 104, 206
Sse9I AATT 3 cut(s) 355, 824, 836
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 5 cut(s) 235, 381, 444, 737, 1185
SspMI CTAG 1 cut(s) 764
SstI GAGCTC 1 cut(s) 516
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 4 cut(s) 29, 96, 405, 742
TaiI ACGT 4 cut(s) 150, 461, 687, 954
TaqI TCGA 4 cut(s) 105, 150, 681, 969
TasI AATT 3 cut(s) 355, 824, 836
TauI GCSGC 2 cut(s) 740, 1188
TfiI GAWTC 1 cut(s) 880
TscAI CASTG 1 cut(s) 936
TseI GCWGC 7 cut(s) 26, 337, 788, 1032, 1069, 1253, 1256
TspDTI ATGAA 3 cut(s) 17, 23, 936
TspGWI ACGGA 5 cut(s) 94, 307, 848, 872, 925
TspRI CASTG 1 cut(s) 936
Van91I CCANNNNNTGG 1 cut(s) 390
VneI GTGCAC 1 cut(s) 1230
VpaK11BI GGWCC 2 cut(s) 81, 433
XapI RAATTY 1 cut(s) 824
XhoI CTCGAG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.