AT1G68450

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017535
Physical Location & Seq
Reverse (-)
25661487 .. 25662276
790 bp
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UTR
Exon/CDS
Intron
AT1G68450.1

Sequence Viewer

Length: 459 bp
ATGATTCCAACAAGATGCAATGAGATCAACGGCTCACGTCCTTCGTCGCTAAAACTCGCCGGAGAATCCCACACCATCAAGAAAACGTCGTCTTGCAAGTCGAAGCCACGACCACATGGACGGGCATCTCCGGTTATCATCTACGCGCATTCTCCAAAAGTGATCCACACGCGTGCCGAAGACTTCATGGCCCTGGTTCAAAGGCTGACGGGTCTAGACGAGATTATTAGACGGAACACTAGTGAATCTTCCTCTTCTGTTGTGACGGAAGAGGTTAACGTCGGGGATGATAACACGGCGGCTCCGTTTAGTCAGGATAGAACACAACGACAGAAGTTAACTGATATGCCGTTGTTCACACCGAGCTCGATGACCTTGTTTGGTTCTCCAACTCAACTTATGTATATGTCACCGAACCGGACCGATTCATTTCGACCCTTGGTTTTTAAGTCCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

152

Amino Acids

16.91

Weight (kDa)

9.51

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 50 - 74 5e-12 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68450
fragaria_vesca FvH4_6g21030
pyrus_communis pycom12g03960
rosa_laevigata RLG00000023724
rosa_multiflora Rmu_ssc0000341.1_g000020
rosa_roxburghii Rroxscaffold_6G00404190
rosa_rugosa Rorug03G0160500
rosa_samantha Rh3AG210800 Rh3BG244100 Rh3CG237900 Rh3DG237700
rosa_wichuraiana Rw3G019100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 146, 172
AciI CCGC 1 cut(s) 299
AclWI GGATC 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 200
AhlI ACTAGT 1 cut(s) 239
AjiI CACGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 192
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw21I GWGCWC 1 cut(s) 368
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 190, 420
AsuHPI GGTGA 1 cut(s) 402
AvaII GGWCC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 368
BccI CCATC 1 cut(s) 83
BceAI ACGGC 3 cut(s) 46, 312, 334
BciT130I CCWGG 1 cut(s) 194
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 215, 240
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 190, 420
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 2 cut(s) 5, 134
BpiI GAAGAC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 192, 438
BsaWI WCCGGW 2 cut(s) 130, 417
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 192, 438
BseGI GGATG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 146, 172
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 368
BsiSI CCGG 3 cut(s) 60, 131, 418
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 2 cut(s) 24, 162
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 191
BspFNI CGCG 2 cut(s) 146, 172
BspLI GGNNCC 1 cut(s) 303
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 192, 438
BssMI GATC 2 cut(s) 24, 162
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 259, 264
BstC8I GCNNGC 1 cut(s) 174
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 2 cut(s) 146, 172
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 27, 165
BstMBI GATC 2 cut(s) 24, 162
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstUI CGCG 2 cut(s) 146, 172
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 191
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 174
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 190, 420
CpoI CGGWCCG 1 cut(s) 420
CspI CGGWCCG 1 cut(s) 420
CviAII CATG 2 cut(s) 116, 187
CviJI RGCY 6 cut(s) 33, 106, 191, 205, 302, 366
CviKI_1 RGCY 6 cut(s) 33, 106, 191, 205, 302, 366
DpnI GATC 2 cut(s) 26, 164
DpnII GATC 2 cut(s) 24, 162
Eam1104I CTCTTC 2 cut(s) 259, 264
EarI CTCTTC 2 cut(s) 259, 264
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 119, 190
FaiI YATR 6 cut(s) 117, 188, 347, 401, 405, 407
FatI CATG 2 cut(s) 115, 186
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 2 cut(s) 215, 240
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 191
HapII CCGG 3 cut(s) 60, 131, 418
HhaI GCGC 1 cut(s) 148
Hin1II CATG 2 cut(s) 119, 190
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 2 cut(s) 277, 339
HindII GTYRAC 2 cut(s) 277, 339
HinfI GANTC 4 cut(s) 4, 65, 245, 425
HpaI GTTAAC 2 cut(s) 277, 339
HpaII CCGG 3 cut(s) 60, 131, 418
HphI GGTGA 1 cut(s) 402
Hpy166II GTNNAC 3 cut(s) 277, 339, 357
Hpy188I TCNGA 1 cut(s) 454
Hpy188III TCNNGA 3 cut(s) 79, 215, 314
Hpy8I GTNNAC 3 cut(s) 277, 339, 357
Hpy99I CGWCG 3 cut(s) 49, 91, 284
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 3 cut(s) 37, 86, 279
HpyCH4V TGCA 2 cut(s) 18, 96
HpySE526I ACGT 3 cut(s) 37, 86, 279
Hsp92II CATG 2 cut(s) 119, 190
HspAI GCGC 1 cut(s) 146
KspAI GTTAAC 2 cut(s) 277, 339
Kzo9I GATC 2 cut(s) 24, 162
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 73, 144, 179, 206, 299, 431
LweI GCATC 2 cut(s) 5, 134
MaeI CTAG 2 cut(s) 215, 240
MaeII ACGT 3 cut(s) 37, 86, 279
MaeIII GTNAC 2 cut(s) 262, 408
MalI GATC 2 cut(s) 26, 164
MboI GATC 2 cut(s) 24, 162
MboII GAAGA 4 cut(s) 191, 240, 246, 281
MhlI GDGCHC 1 cut(s) 368
MluI ACGCGT 1 cut(s) 170
MmeI TCCRAC 2 cut(s) 32, 413
MnlI CCTC 2 cut(s) 262, 265
MseI TTAA 3 cut(s) 276, 338, 447
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 3 cut(s) 60, 131, 418
MspR9I CCNGG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 148
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 146, 172
NdeII GATC 2 cut(s) 24, 162
NlaIII CATG 2 cut(s) 119, 190
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 2 cut(s) 262, 408
OliI CACNNNNGTG 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 4 cut(s) 4, 65, 245, 425
PkrI GCNGC 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 303
PspPI GGNCC 2 cut(s) 190, 420
RseI CAYNNNNRTG 1 cut(s) 171
Rsr2I CGGWCCG 1 cut(s) 420
RsrII CGGWCCG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 3 cut(s) 276, 338, 447
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 24, 162
Sau96I GGNCC 2 cut(s) 190, 420
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 368
SetI ASST 6 cut(s) 40, 89, 276, 282, 368, 377
SfaNI GCATC 2 cut(s) 5, 134
SinI GGWCC 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 239
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 215, 240
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 438
TaiI ACGT 3 cut(s) 40, 89, 282
TaqI TCGA 3 cut(s) 101, 368, 433
TaqII GACCGA 1 cut(s) 437
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 4 cut(s) 4, 65, 245, 425
Tru1I TTAA 3 cut(s) 276, 338, 447
Tru9I TTAA 3 cut(s) 276, 338, 447
TseFI GTSAC 2 cut(s) 262, 408
Tsp45I GTSAC 2 cut(s) 262, 408
TspDTI ATGAA 2 cut(s) 175, 417
TspGWI ACGGA 3 cut(s) 247, 281, 294
VpaK11BI GGWCC 1 cut(s) 420
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 2 cut(s) 215, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.