FvH4_6g21030

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017535
Physical Location & Seq
Reverse (-)
14564918 .. 14565364
447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21030.t1

Sequence Viewer

Length: 447 bp
ATGAAGTTCTACTGCAGCGTCGAAAATCGTGGGGATGAACCAACGAACTGTATTGCAAGGCCGCATACACAGTTGCAGGGTCCGAGGCCTGCAGCTCTTACAGTGAGCAAGAATTCGAAGAAGATGATGGCGAAGAAGAAGAAGCAGAACCCGAGTCCGGTTATAGTGTATCTGATATCGCCCAGGATTATTCATGTACAACCTGAGGAGTTCATGGCTCTGGTGCAACGCCTTACCGGGAATCATGAATCATCGCGTAGGGTTAATAATATCGTTGCTAATTCCCAGTCCTGCTCTGCTTCTAGTAATTCTGGTTTGAGCCAAGGAGATCAGTATTTCATGGAGATTAGCCAACAGAAGCTGATCAGCAATAAGACAGACTATGATGATGTGCCTTTTGGAATACCTACTACAACAACGAATTCCAACTTTACTGAAATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

149

Amino Acids

16.55

Weight (kDa)

9.24

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 59 - 83 1.3e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68450
fragaria_vesca FvH4_6g21030
pyrus_communis pycom12g03960
rosa_laevigata RLG00000023724
rosa_multiflora Rmu_ssc0000341.1_g000020
rosa_roxburghii Rroxscaffold_6G00404190
rosa_rugosa Rorug03G0160500
rosa_samantha Rh3AG210800 Rh3BG244100 Rh3CG237900 Rh3DG237700
rosa_wichuraiana Rw3G019100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AciI CCGC 1 cut(s) 62
AcsI RAATTY 2 cut(s) 112, 421
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 157
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 2 cut(s) 95, 361
AluI AGCT 2 cut(s) 95, 361
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 2 cut(s) 59, 86
ApeKI GCWGC 2 cut(s) 15, 92
ApoI RAATTY 2 cut(s) 112, 421
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 1 cut(s) 80
AxyI CCTNAGG 1 cut(s) 204
BbvI GCAGC 2 cut(s) 27, 104
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 184
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 1 cut(s) 238
BfaI CTAG 2 cut(s) 303, 445
BfmI CTRYAG 2 cut(s) 13, 90
BisI GCNGC 3 cut(s) 16, 62, 93
BlsI GCNGC 3 cut(s) 17, 63, 94
Bme1390I CCNGG 2 cut(s) 184, 238
Bme18I GGWCC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 184, 238
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 83, 182, 322
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 3 cut(s) 83, 182, 322
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 27, 104
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 61, 88
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 158, 237
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 2 cut(s) 61, 88
BsoBI CYCGRG 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 328, 363
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 61, 88
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 2 cut(s) 17, 94
BspT104I TTCGAA 1 cut(s) 116
BsrGI TGTACA 1 cut(s) 196
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 3 cut(s) 83, 182, 322
BssMI GATC 2 cut(s) 328, 363
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 50, 72, 103
BstAUI TGTACA 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 2 cut(s) 331, 366
BstMBI GATC 2 cut(s) 328, 363
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 182, 236
BstSFI CTRYAG 2 cut(s) 13, 90
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 27, 104
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 2 cut(s) 61, 88
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 361
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 80
CseI GACGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 197
CviAII CATG 4 cut(s) 194, 214, 245, 340
CviJI RGCY 7 cut(s) 61, 88, 95, 218, 321, 351, 361
CviKI_1 RGCY 7 cut(s) 61, 88, 95, 218, 321, 351, 361
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 330, 365
DpnII GATC 2 cut(s) 328, 363
Eco130I CCWWGG 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 88
Eco32I GATATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 80
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 151
EcoRI GAATTC 2 cut(s) 112, 421
EcoRII CCWGG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 4 cut(s) 197, 217, 248, 343
FaiI YATR 7 cut(s) 66, 164, 195, 215, 246, 341, 384
FatI CATG 4 cut(s) 193, 213, 244, 339
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 16, 62, 93
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 16, 62, 93
FspBI CTAG 2 cut(s) 303, 445
GluI GCNGC 3 cut(s) 16, 62, 93
HaeIII GGCC 2 cut(s) 61, 88
HapII CCGG 2 cut(s) 158, 237
HgaI GACGC 1 cut(s) 7
Hin1II CATG 4 cut(s) 197, 217, 248, 343
HinfI GANTC 3 cut(s) 154, 241, 248
HpaII CCGG 2 cut(s) 158, 237
Hpy188I TCNGA 2 cut(s) 84, 174
Hpy188III TCNNGA 1 cut(s) 245
Hpy99I CGWCG 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 50, 72, 103
HpyCH4V TGCA 5 cut(s) 15, 56, 76, 92, 226
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 4 cut(s) 197, 217, 248, 343
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 328, 363
Lsp1109I GCAGC 2 cut(s) 27, 104
MaeI CTAG 2 cut(s) 303, 445
MalI GATC 2 cut(s) 330, 365
MboI GATC 2 cut(s) 328, 363
MboII GAAGA 5 cut(s) 130, 133, 145, 148, 151
MluCI AATT 4 cut(s) 112, 280, 307, 421
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 2 cut(s) 78, 199
MseI TTAA 1 cut(s) 264
MspI CCGG 2 cut(s) 158, 237
MspR9I CCNGG 2 cut(s) 184, 238
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 1 cut(s) 256
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 328, 363
NlaIII CATG 4 cut(s) 197, 217, 248, 343
NlaIV GGNNCC 1 cut(s) 81
NspV TTCGAA 1 cut(s) 116
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 88
PfeI GAWTC 2 cut(s) 241, 248
PkrI GCNGC 3 cut(s) 17, 63, 94
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 80
PstI CTGCAG 2 cut(s) 17, 94
PstNI CAGNNNCTG 1 cut(s) 361
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 3 cut(s) 16, 62, 93
Sau3AI GATC 2 cut(s) 328, 363
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 184, 238
SetI ASST 4 cut(s) 97, 205, 363, 409
SfcI CTRYAG 2 cut(s) 13, 90
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 80
Sse9I AATT 4 cut(s) 112, 280, 307, 421
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 441
SspMI CTAG 2 cut(s) 303, 445
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 182, 236
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 3 cut(s) 50, 72, 103
TaqI TCGA 2 cut(s) 21, 116
TasI AATT 4 cut(s) 112, 280, 307, 421
TatI WGTACW 1 cut(s) 196
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 2 cut(s) 241, 248
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 108
TseI GCWGC 2 cut(s) 15, 92
TspDTI ATGAA 6 cut(s) 17, 51, 182, 202, 261, 328
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 2 cut(s) 112, 421
XspI CTAG 2 cut(s) 303, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.