Rroxscaffold_6G00404190

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017535
Physical Location & Seq
Forward (+)
26684446 .. 26685413
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404190.1

Sequence Viewer

Length: 561 bp
ATGATTTCAAATGAACATTTTGATTATATATCCCAAGTTTCTGCTAAAATAATTGCACGCCAAAGAGAAAAGTACATGAAAAATGACTTTGAACCCGACTCTGAGACTGGCAAGCTAATCATGAACTTCAGCTGCGTCGAAAATCGTGGTAAACCAACTAGTTTTATTGCAAGGCCGCATTCGCAGTTGCAGGGTCCTAGGCCTGCAGCTCTTACGGTGAGCAAGAATTCGAAGAAGATGATGGCGAAGAAGAAAACGAACCCACAGAATCCGGTTATAGTGTATCTGACATCGCCCAAGATTATTCATGTACAACCTGAGGAGTTCATGGGTCTGGTGCAACGCCTTACCGGAAATCATCAAGGACCGCGTAGGGTTAATAATATTGTCGCTAATTCCCAGTCTTGCTCTACTTCTAGAAATTCTGGTGTGAGCCAAGGAGATCAATATTTCATGGAGAGCAGCCAACAGAAGCTGATCAGCAGTAGGGCCGACTATGCTGATGTGCCCTTTGGAATACCTACTGCAACAACTAATTCCAACTTTACTGAGATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

9.63

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 98 - 121 6e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68450
fragaria_vesca FvH4_6g21030
pyrus_communis pycom12g03960
rosa_laevigata RLG00000023724
rosa_multiflora Rmu_ssc0000341.1_g000020
rosa_roxburghii Rroxscaffold_6G00404190
rosa_rugosa Rorug03G0160500
rosa_samantha Rh3AG210800 Rh3BG244100 Rh3CG237900 Rh3DG237700
rosa_wichuraiana Rw3G019100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 370
AciI CCGC 2 cut(s) 176, 368
AcsI RAATTY 2 cut(s) 226, 421
AcuI CTGAAG 1 cut(s) 112
AfaI GTAC 2 cut(s) 74, 312
AgsI TTSAA 2 cut(s) 9, 92
AhlI ACTAGT 1 cut(s) 158
AluBI AGCT 4 cut(s) 115, 132, 209, 475
AluI AGCT 4 cut(s) 115, 132, 209, 475
Alw26I GTCTC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 475
AoxI GGCC 3 cut(s) 173, 200, 489
ApeKI GCWGC 3 cut(s) 132, 206, 462
ApoI RAATTY 2 cut(s) 226, 421
AspA2I CCTAGG 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 194, 365, 489
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 230
AvaII GGWCC 2 cut(s) 194, 365
AvrII CCTAGG 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 119, 218, 474
BccI CCATC 1 cut(s) 235
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 3 cut(s) 159, 198, 417
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 4 cut(s) 133, 176, 207, 463
BlnI CCTAGG 1 cut(s) 197
BlsI GCNGC 4 cut(s) 134, 177, 208, 464
Bme18I GGWCC 2 cut(s) 194, 365
BmgT120I GGNCC 3 cut(s) 194, 365, 489
BmiI GGNNCC 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 394
Bpu14I TTCGAA 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 197, 436
BsaWI WCCGGW 2 cut(s) 271, 350
Bse1I ACTGG 2 cut(s) 112, 400
Bse21I CCTNAGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 197, 436
BseMII CTCAG 3 cut(s) 93, 309, 540
BseNI ACTGG 2 cut(s) 112, 400
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 3 cut(s) 119, 218, 474
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 3 cut(s) 175, 202, 491
BsiSI CCGG 2 cut(s) 272, 351
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 3 cut(s) 175, 202, 491
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 510
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 2 cut(s) 442, 477
BspACI CCGC 2 cut(s) 176, 368
BspANI GGCC 3 cut(s) 175, 202, 491
BspCNI CTCAG 3 cut(s) 94, 310, 541
BspFNI CGCG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 2 cut(s) 112, 400
BssECI CCNNGG 2 cut(s) 197, 436
BssMI GATC 2 cut(s) 442, 477
BssT1I CCWWGG 2 cut(s) 197, 436
Bst4CI ACNGT 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 58, 113, 204
BstDEI CTNAG 3 cut(s) 102, 318, 549
BstFNI CGCG 1 cut(s) 370
BstKTI GATC 2 cut(s) 445, 480
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 442, 477
BstMWI GCNNNNNNNGC 2 cut(s) 181, 497
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 510
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 119, 218, 474
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 3 cut(s) 175, 202, 491
BtgZI GCGATG 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 58, 113, 204
CaiI CAGNNNCTG 1 cut(s) 475
CciI TCATGA 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 194, 365, 489
CseI GACGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 73, 311
CviAII CATG 5 cut(s) 76, 121, 308, 328, 454
CviJI RGCY 9 cut(s) 115, 132, 175, 202, 209, 435, 465, 475, 491
CviKI_1 RGCY 9 cut(s) 115, 132, 175, 202, 209, 435, 465, 475, 491
CviQI GTAC 2 cut(s) 73, 311
DdeI CTNAG 3 cut(s) 102, 318, 549
DpnI GATC 2 cut(s) 444, 479
DpnII GATC 2 cut(s) 442, 477
Eco130I CCWWGG 2 cut(s) 197, 436
Eco147I AGGCCT 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 194, 365
Eco57I CTGAAG 1 cut(s) 112
Eco81I CCTNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 197, 436
ErhI CCWWGG 2 cut(s) 197, 436
FaeI CATG 5 cut(s) 79, 124, 311, 331, 457
FaiI YATR 9 cut(s) 27, 29, 77, 122, 278, 309, 329, 455, 498
FatI CATG 5 cut(s) 75, 120, 307, 327, 453
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 4 cut(s) 133, 176, 207, 463
Fsp4HI GCNGC 4 cut(s) 133, 176, 207, 463
FspBI CTAG 3 cut(s) 159, 198, 417
GluI GCNGC 4 cut(s) 133, 176, 207, 463
HaeIII GGCC 3 cut(s) 175, 202, 491
HapII CCGG 2 cut(s) 272, 351
HgaI GACGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 79, 124, 311, 331, 457
HinfI GANTC 2 cut(s) 98, 268
HpaII CCGG 2 cut(s) 272, 351
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 103, 288
Hpy188III TCNNGA 2 cut(s) 121, 417
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 6 cut(s) 56, 170, 190, 206, 340, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 497
HpyF3I CTNAG 3 cut(s) 102, 318, 549
Hsp92II CATG 5 cut(s) 79, 124, 311, 331, 457
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 2 cut(s) 442, 477
LpnPI CCDG 9 cut(s) 93, 176, 216, 285, 320, 330, 364, 411, 413
Lsp1109I GCAGC 3 cut(s) 119, 218, 474
MaeI CTAG 3 cut(s) 159, 198, 417
MalI GATC 2 cut(s) 444, 479
MboI GATC 2 cut(s) 442, 477
MboII GAAGA 4 cut(s) 244, 247, 259, 262
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 5 cut(s) 51, 226, 394, 421, 535
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 1 cut(s) 313
MseI TTAA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 2 cut(s) 272, 351
Mva1269I GAATGC 1 cut(s) 178
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 181, 497
NdeII GATC 2 cut(s) 442, 477
NlaIII CATG 5 cut(s) 79, 124, 311, 331, 457
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 230
PagI TCATGA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 202
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 4 cut(s) 134, 177, 208, 464
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 3 cut(s) 194, 365, 489
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 475
PvuII CAGCTG 1 cut(s) 132
RsaI GTAC 2 cut(s) 74, 312
RsaNI GTAC 2 cut(s) 73, 311
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 4 cut(s) 133, 176, 207, 463
Sau3AI GATC 2 cut(s) 442, 477
Sau96I GGNCC 3 cut(s) 194, 365, 489
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 510
SetI ASST 6 cut(s) 117, 134, 211, 319, 477, 523
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 2 cut(s) 194, 365
SpeI ACTAGT 1 cut(s) 158
Sse9I AATT 5 cut(s) 51, 226, 394, 421, 535
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 2 cut(s) 176, 368
SspI AATATT 2 cut(s) 385, 449
SspMI CTAG 3 cut(s) 159, 198, 417
StuI AGGCCT 1 cut(s) 202
StyI CCWWGG 2 cut(s) 197, 436
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 2 cut(s) 138, 230
TasI AATT 5 cut(s) 51, 226, 394, 421, 535
TatI WGTACW 2 cut(s) 72, 310
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TseI GCWGC 3 cut(s) 132, 206, 462
TspDTI ATGAA 6 cut(s) 27, 92, 137, 296, 316, 442
VpaK11BI GGWCC 2 cut(s) 194, 365
XapI RAATTY 2 cut(s) 226, 421
XbaI TCTAGA 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 197
XspI CTAG 3 cut(s) 159, 198, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.