Rh3DG237700

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017535
Physical Location & Seq
Reverse (-)
22790332 .. 22790772
441 bp
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UTR
Exon/CDS
Intron
Rh3DG237700.1

Sequence Viewer

Length: 441 bp
ATGAACTTCAGCAGCGTCGAAAGTCGTGGTAAACCAACGAGTTTTATTGCAAGGCCGCATTCACAGTTGCAGGGTCCTAGGCCTGCAGCTCTTACAGTGAGCAAGAATTCGAAGAAGATGATGGCGAAAAAGAAAACGGACCCACCGAATCCGGTTATAGTGTATCTGATATCGCCCAAGATTATTCATGTACAACCTGAGGAGTTCATGGGTCTGGTGCAACGCCTCACCGGAAATCATCAAGGATCGCGTAGGGTTAATAATATTGTCGCTAATTCCCAGTCTTGCTCCACTTCTAGAAATTCTGGTGTGAGCCAAGGAGATCAGTATTTCATGGGGAGCAGCCAACAGAAGCTGATCAGCAGTAGGGCCAACTATGCTGATGTGCCCTTTGGAATACCTACTGCAACACCTAATTCCAACTTTGCAGAGATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

146

Amino Acids

15.97

Weight (kDa)

10.28

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 57 - 80 2.6e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68450
fragaria_vesca FvH4_6g21030
pyrus_communis pycom12g03960
rosa_laevigata RLG00000023724
rosa_multiflora Rmu_ssc0000341.1_g000020
rosa_roxburghii Rroxscaffold_6G00404190
rosa_rugosa Rorug03G0160500
rosa_samantha Rh3AG210800 Rh3BG244100 Rh3CG237900 Rh3DG237700
rosa_wichuraiana Rw3G019100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 250
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 106, 301
AfaI GTAC 1 cut(s) 192
AluBI AGCT 2 cut(s) 89, 355
AluI AGCT 2 cut(s) 89, 355
AlwI GGATC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 3 cut(s) 53, 80, 369
ApeKI GCWGC 3 cut(s) 12, 86, 342
ApoI RAATTY 2 cut(s) 106, 301
AspA2I CCTAGG 1 cut(s) 77
AspS9I GGNCC 3 cut(s) 74, 139, 369
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 110
AvaII GGWCC 2 cut(s) 74, 139
AvrII CCTAGG 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 24, 98, 354
BccI CCATC 1 cut(s) 115
BclI TGATCA 1 cut(s) 357
BfaI CTAG 2 cut(s) 78, 297
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 13, 56, 87, 343
BlnI CCTAGG 1 cut(s) 77
BlsI GCNGC 4 cut(s) 14, 57, 88, 344
Bme18I GGWCC 2 cut(s) 74, 139
BmgT120I GGNCC 3 cut(s) 74, 139, 369
BmiI GGNNCC 2 cut(s) 75, 141
BmrI ACTGGG 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 77, 316
BsaWI WCCGGW 2 cut(s) 151, 230
Bse1I ACTGG 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 77, 316
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 3 cut(s) 24, 98, 354
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 3 cut(s) 55, 82, 371
BsiSI CCGG 2 cut(s) 152, 231
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 3 cut(s) 55, 82, 371
Bsp119I TTCGAA 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 390
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 245, 322, 357
BspACI CCGC 1 cut(s) 56
BspANI GGCC 3 cut(s) 55, 82, 371
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 75, 141
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 110
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 77, 316
BssMI GATC 3 cut(s) 245, 322, 357
BssT1I CCWWGG 2 cut(s) 77, 316
Bst4CI ACNGT 2 cut(s) 66, 97
BstAUI TGTACA 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 250
BstKTI GATC 3 cut(s) 248, 325, 360
BstMBI GATC 3 cut(s) 245, 322, 357
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 3 cut(s) 24, 98, 354
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 3 cut(s) 55, 82, 371
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 74, 139, 369
CseI GACGC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 191
CviAII CATG 3 cut(s) 188, 208, 334
CviJI RGCY 7 cut(s) 55, 82, 89, 315, 345, 355, 371
CviKI_1 RGCY 7 cut(s) 55, 82, 89, 315, 345, 355, 371
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 247, 324, 359
DpnII GATC 3 cut(s) 245, 322, 357
Eco130I CCWWGG 2 cut(s) 77, 316
Eco147I AGGCCT 1 cut(s) 82
Eco32I GATATC 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 74, 139
Eco81I CCTNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 106
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 77, 316
ErhI CCWWGG 2 cut(s) 77, 316
FaeI CATG 3 cut(s) 191, 211, 337
FaiI YATR 5 cut(s) 158, 189, 209, 335, 378
FatI CATG 3 cut(s) 187, 207, 333
FbaI TGATCA 1 cut(s) 357
Fnu4HI GCNGC 4 cut(s) 13, 56, 87, 343
Fsp4HI GCNGC 4 cut(s) 13, 56, 87, 343
FspBI CTAG 2 cut(s) 78, 297
GluI GCNGC 4 cut(s) 13, 56, 87, 343
HaeIII GGCC 3 cut(s) 55, 82, 371
HapII CCGG 2 cut(s) 152, 231
HgaI GACGC 1 cut(s) 4
Hin1II CATG 3 cut(s) 191, 211, 337
HinfI GANTC 1 cut(s) 148
HpaII CCGG 2 cut(s) 152, 231
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 66, 97
HpyCH4V TGCA 6 cut(s) 50, 70, 86, 220, 407, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 3 cut(s) 191, 211, 337
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 3 cut(s) 245, 322, 357
LmnI GCTCC 2 cut(s) 293, 339
LpnPI CCDG 8 cut(s) 56, 96, 165, 200, 210, 244, 291, 293
Lsp1109I GCAGC 3 cut(s) 24, 98, 354
MaeI CTAG 2 cut(s) 78, 297
MalI GATC 3 cut(s) 247, 324, 359
MboI GATC 3 cut(s) 245, 322, 357
MboII GAAGA 2 cut(s) 124, 127
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 4 cut(s) 106, 274, 301, 415
MnlI CCTC 2 cut(s) 193, 236
MseI TTAA 1 cut(s) 258
MspI CCGG 2 cut(s) 152, 231
Mva1269I GAATGC 1 cut(s) 58
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 377
NdeII GATC 3 cut(s) 245, 322, 357
NlaIII CATG 3 cut(s) 191, 211, 337
NlaIV GGNNCC 2 cut(s) 75, 141
NspV TTCGAA 1 cut(s) 110
PceI AGGCCT 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 1 cut(s) 58
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 4 cut(s) 14, 57, 88, 344
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspN4I GGNNCC 2 cut(s) 75, 141
PspPI GGNCC 3 cut(s) 74, 139, 369
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 355
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 4 cut(s) 13, 56, 87, 343
Sau3AI GATC 3 cut(s) 245, 322, 357
Sau96I GGNCC 3 cut(s) 74, 139, 369
SduI GDGCHC 1 cut(s) 390
SetI ASST 5 cut(s) 91, 199, 357, 403, 415
SfcI CTRYAG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 2 cut(s) 74, 139
Sse9I AATT 4 cut(s) 106, 274, 301, 415
SseBI AGGCCT 1 cut(s) 82
SsiI CCGC 1 cut(s) 56
SspI AATATT 1 cut(s) 265
SspMI CTAG 2 cut(s) 78, 297
StuI AGGCCT 1 cut(s) 82
StyI CCWWGG 2 cut(s) 77, 316
TaaI ACNGT 2 cut(s) 66, 97
TaqI TCGA 2 cut(s) 18, 110
TasI AATT 4 cut(s) 106, 274, 301, 415
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 102
TseI GCWGC 3 cut(s) 12, 86, 342
TspDTI ATGAA 4 cut(s) 17, 176, 196, 322
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 74, 139
XapI RAATTY 2 cut(s) 106, 301
XbaI TCTAGA 1 cut(s) 296
XmaJI CCTAGG 1 cut(s) 77
XspI CTAG 2 cut(s) 78, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.