pycom12g03960

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0017535
Physical Location & Seq
Forward (+)
3858017 .. 3858421
405 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03960.1

Sequence Viewer

Length: 405 bp
ATGAAGTCCTTAAGAAGGCATTTGGAGTTGCAGGGTCCAAGGCCTGCACCTCTTATGGTGAGCAAGAATTCACAGAAGGTGATGAAGAAGAAGCCAGTCGTAGTATATCTCATCTCACCCAAGATTATTCATGTCCAACCTGAAGAGTTTATGGGTTTGGTTCAACGGCTCACTGGCAACAATAATAATCAAGGTTGTCGAGCATCCAAGGTTATTAAAATTAGTGTTGCTAATTCCCAGTCTTGCTCTTCTTCTTCCACAACTTCTTGTTCGATCAACCAAGAAGCTTTCGTAAGGGAGAGCCGAGAGAAGCACAACAATAATAGGGCACATGAGTTCAATGGTGATCGTGTGCCTTTTGGAATACCTACTACAACAACTTCCAACTTTGCTGAAATATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
VQ

Protein Analysis

135

Amino Acids

14.98

Weight (kDa)

10.1

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 38 - 60 3.3e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68450
fragaria_vesca FvH4_6g21030
pyrus_communis pycom12g03960
rosa_laevigata RLG00000023724
rosa_multiflora Rmu_ssc0000341.1_g000020
rosa_roxburghii Rroxscaffold_6G00404190
rosa_rugosa Rorug03G0160500
rosa_samantha Rh3AG210800 Rh3BG244100 Rh3CG237900 Rh3DG237700
rosa_wichuraiana Rw3G019100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 15
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 2 cut(s) 164, 340
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 4 cut(s) 70, 91, 108, 356
AvaII GGWCC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 331
BceAI ACGGC 1 cut(s) 182
BfaI CTAG 1 cut(s) 403
BfrI CTTAAG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 38, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 95, 178, 238
BseDI CCNNGG 2 cut(s) 38, 207
BseGI GGATG 1 cut(s) 203
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 3 cut(s) 95, 178, 238
BseSI GKGCMC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 15
BsnI GGCC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 273, 346
BspANI GGCC 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 36
BspQI GCTCTTC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 10
BsrI ACTGG 3 cut(s) 95, 178, 238
BssECI CCNNGG 2 cut(s) 38, 207
BssMI GATC 2 cut(s) 273, 346
BssT1I CCWWGG 2 cut(s) 38, 207
Bst6I CTCTTC 2 cut(s) 138, 253
BstAFI CTTAAG 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 45
BstENI CCTNNNNNAGG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 203
BstKTI GATC 2 cut(s) 276, 349
BstMBI GATC 2 cut(s) 273, 346
BstSLI GKGCMC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 2 cut(s) 131, 332
CviJI RGCY 5 cut(s) 43, 94, 169, 287, 303
CviKI_1 RGCY 5 cut(s) 43, 94, 169, 287, 303
DpnI GATC 2 cut(s) 275, 348
DpnII GATC 2 cut(s) 273, 346
Eam1104I CTCTTC 2 cut(s) 138, 253
EarI CTCTTC 2 cut(s) 138, 253
Eco130I CCWWGG 2 cut(s) 38, 207
Eco147I AGGCCT 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 162
EcoNI CCTNNNNNAGG 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 38, 207
ErhI CCWWGG 2 cut(s) 38, 207
FaeI CATG 2 cut(s) 134, 335
FaiI YATR 5 cut(s) 56, 106, 132, 152, 333
FatI CATG 2 cut(s) 130, 331
FokI GGATG 1 cut(s) 190
FspBI CTAG 1 cut(s) 403
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 2 cut(s) 134, 335
HindIII AAGCTT 1 cut(s) 285
HphI GGTGA 4 cut(s) 70, 91, 108, 356
HpyAV CCTTC 2 cut(s) 9, 70
HpyCH4V TGCA 2 cut(s) 31, 47
Hsp92II CATG 2 cut(s) 134, 335
Kzo9I GATC 2 cut(s) 273, 346
LguI GCTCTTC 1 cut(s) 253
LpnPI CCDG 6 cut(s) 17, 57, 108, 153, 159, 251
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 403
MalI GATC 2 cut(s) 275, 348
MboI GATC 2 cut(s) 273, 346
MboII GAAGA 6 cut(s) 97, 100, 155, 240, 243, 246
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 3 cut(s) 67, 219, 232
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 60
MseI TTAA 2 cut(s) 11, 216
MspCI CTTAAG 1 cut(s) 10
NdeII GATC 2 cut(s) 273, 346
NlaIII CATG 2 cut(s) 134, 335
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 329
PceI AGGCCT 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 2 cut(s) 11, 216
Sau3AI GATC 2 cut(s) 273, 346
Sau96I GGNCC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 331
SetI ASST 7 cut(s) 52, 81, 142, 196, 213, 289, 370
SfaNI GCATC 1 cut(s) 212
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 3 cut(s) 67, 219, 232
SseBI AGGCCT 1 cut(s) 43
SspI AATATT 1 cut(s) 399
SspMI CTAG 1 cut(s) 403
StuI AGGCCT 1 cut(s) 43
StyI CCWWGG 2 cut(s) 38, 207
TaqI TCGA 2 cut(s) 199, 272
TasI AATT 3 cut(s) 67, 219, 232
Tru1I TTAA 2 cut(s) 11, 216
Tru9I TTAA 2 cut(s) 11, 216
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 3 cut(s) 17, 98, 119
TspRI CASTG 1 cut(s) 178
Vha464I CTTAAG 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 35
XagI CCTNNNNNAGG 1 cut(s) 13
XapI RAATTY 1 cut(s) 67
XspI CTAG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.