AT1G70160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014220
Physical Location & Seq
Forward (+)
26419894 .. 26422531
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70160.1

Sequence Viewer

Length: 1572 bp
ATGTCTCAGAACCCATCACTCTTCTTCCTCTTATGTCTAGGGTTAGGTTTTTGCGTTGACCTGGGTCAATCCCTGAAAGTTCCTTTCAGCGTTAACGATGTTCTTCCGATGCTACCTCGTCAAGTCTCATGGCCTGTTTTGAACAGTTTCCACAACGCTGTGGATTTGTTGCCGGTTTTTATTGGGTCAGTTACTCCTAATAATGTATCTATTGAGTGGAAAGGTGCTTGCTTTAATGGTAATGAAGCTCGTCTTGATATCACCGGTAGTGATCGTGACGTCCCTGGACTTGGTGGTGGTGTTCTTCATCTCAAAACATCCAAGGCACATAGCTTGACATGTATGGATCTTTATGTGTTTGCAACGCCATACAGGATCACTTGGGACTACTATTTCTCTGCTAGAGATCATACTTTGAACTTTGATTCTTGGGAAGAGAAAGCTGAATTGGAATATGTGAAGGAGCATGGCGTTTCAGTGTTTCTAATGCCATCAGGAATGCTTGGGACGTTGCTATCTTTGATTGATGTGTTACCTCTTTTCTCCAATACTGCTTGGGGACAGAATGCGAATTTGGCGTTCTTGACGAAACATATGGGTGCTACCTTTGAGAAACGGTCTCAACCTTGGCGGTCAATGATTAACCCAGAAGATGTGCATTCTGGTGATTTCTTGGCGGTGTCGAAGATTCGAGGTAGATGGGGTGGTTTTGAGACGTTAGAGAAATGGGTGACTGGGGCTTTTGCTGGTCATACTGCTGTTTGTTTGAAGGATGATTTGGGGAATCTTTGGGTTGGTGAATCAGGACATGAGAACGAAAAGGGTGAAGAAATCATTGTTGTGATCCCTTGGGATGAATGGTGGGAGCTGACTTTGAAGGATAATTCAAATCCTCAAGTAGCTTTGCTTCCTCTACATCCTGATATCCGGGCAAAGTTCAACAATACTGCTGCGTGGGAATATGCACGGAGTATGTTGGGCAAACCGTATGGATATCACAACATGATATTCAGCTGGATCGACACTCTAGGCGATAACTACCCCCCTCCCCTTGATGCTCACTTGGTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCATTTGATGAGTTACTCACCATCCCTGAACAGGATGAGTGGGTTTATAGCGACGGTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTACCGAGTTGGTGCAACACCGAGGAAGGGAAGCTTGACTTCTGTCAAATTCTAGGTGAATACAGAATGGAGTTACCTGGTTATAACACCATTTACCCATATCCAAACATGAACCAGAATTGTCCTTCTTTACCTCCTAATTATGAGAGACCTTCTAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

523

Amino Acids

59.13

Weight (kDa)

4.96

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70160
fragaria_vesca FvH4_4g35210
malus_domestica MD13G1085500.v1.1 MD16G1084800.v1.1
prunus_persica Prupe.1G261300_v2.0.a1
pyrus_communis pycom13g07390 pycom16g07340
rosa_chinensis RchiOBHm_Chr4g0444811
rosa_laevigata RLG00000005800
rosa_multiflora Rmu_sc0000096.1_g000022
rosa_roxburghii Rroxscaffold_5G00385300
rosa_rugosa Rorug04G0355300
rosa_samantha Rh4AG416600 Rh4BG428400 Rh4CG443100 Rh4DG424100
rosa_wichuraiana Rw4G035710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1491
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 1111
AciI CCGC 2 cut(s) 631, 677
AclWI GGATC 5 cut(s) 354, 383, 838, 1025, 1167
AcsI RAATTY 3 cut(s) 571, 1352, 1455
AcuI CTGAAG 1 cut(s) 1400
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 4 cut(s) 1098, 1153, 1301, 1373
AfiI CCNNNNNNNGG 3 cut(s) 290, 1237, 1434
AflIII ACRYGT 2 cut(s) 338, 1274
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 8 cut(s) 142, 418, 769, 877, 888, 940, 1184, 1343
AjnI CCWGG 3 cut(s) 60, 283, 1483
AjuI GAANNNNNNNTTGG 6 cut(s) 431, 463, 557, 589, 761, 793
AluBI AGCT 8 cut(s) 248, 333, 443, 868, 902, 1014, 1307, 1441
AluI AGCT 8 cut(s) 248, 333, 443, 868, 902, 1014, 1307, 1441
Alw26I GTCTC 5 cut(s) 9, 130, 624, 707, 1549
AlwI GGATC 5 cut(s) 354, 383, 838, 1025, 1167
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 950, 1112, 1307
ApoI RAATTY 3 cut(s) 571, 1352, 1455
AsiGI ACCGGT 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 929
AsuHPI GGTGA 7 cut(s) 253, 677, 742, 809, 836, 1216, 1475
BarI GAAGNNNNNNTAC 2 cut(s) 891, 923
BauI CACGAG 1 cut(s) 1092
BbvI GCAGC 3 cut(s) 937, 1099, 1294
BccI CCATC 4 cut(s) 22, 499, 693, 1235
BciT130I CCWGG 3 cut(s) 62, 285, 1485
BciVI GTATCC 1 cut(s) 1170
BclI TGATCA 1 cut(s) 1333
BcnI CCSGG 1 cut(s) 929
BcoDI GTCTC 5 cut(s) 9, 130, 624, 707, 1549
BfaI CTAG 4 cut(s) 38, 402, 1028, 1460
BfuAI ACCTGC 1 cut(s) 1111
BfuI GTATCC 1 cut(s) 1170
BisI GCNGC 3 cut(s) 951, 1113, 1308
BlsI GCNGC 3 cut(s) 952, 1114, 1309
Bme1390I CCNGG 4 cut(s) 62, 285, 929, 1485
BmrFI CCNGG 4 cut(s) 62, 285, 929, 1485
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 3 cut(s) 99, 1045, 1357
BmuI ACTGGG 1 cut(s) 744
BoxI GACNNNNGTC 2 cut(s) 63, 1449
BpuEI CTTGAG 1 cut(s) 879
BpuMI CCSGG 1 cut(s) 929
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 2 cut(s) 624, 1549
BsaJI CCNNGG 6 cut(s) 61, 283, 321, 626, 848, 1428
BsaWI WCCGGW 1 cut(s) 263
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 1237, 1434
Bse118I RCCGGY 2 cut(s) 172, 263
Bse1I ACTGG 1 cut(s) 739
Bse3DI GCAATG 1 cut(s) 1302
BseBI CCWGG 3 cut(s) 62, 285, 1485
BseDI CCNNGG 6 cut(s) 61, 283, 321, 626, 848, 1428
BseGI GGATG 7 cut(s) 317, 778, 859, 916, 1227, 1246, 1287
BseLI CCNNNNNNNGG 3 cut(s) 290, 1237, 1434
BseMI GCAATG 1 cut(s) 1302
BseMII CTCAG 2 cut(s) 20, 1146
BseNI ACTGG 1 cut(s) 739
BseXI GCAGC 3 cut(s) 937, 1099, 1294
BshFI GGCC 1 cut(s) 133
BshTI ACCGGT 1 cut(s) 263
BsiSI CCGG 3 cut(s) 173, 264, 928
BslFI GGGAC 4 cut(s) 266, 398, 520, 573
BslI CCNNNNNNNGG 3 cut(s) 290, 1237, 1434
BsmAI GTCTC 5 cut(s) 9, 130, 624, 707, 1549
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 4 cut(s) 266, 398, 520, 573
BsmI GAATGC 3 cut(s) 504, 571, 658
BsnI GGCC 1 cut(s) 133
Bso31I GGTCTC 2 cut(s) 624, 1549
Bsp1407I TGTACA 2 cut(s) 1096, 1299
Bsp143I GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
BspACI CCGC 2 cut(s) 631, 677
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 19, 1147
BspMI ACCTGC 1 cut(s) 1111
BspPI GGATC 5 cut(s) 354, 383, 838, 1025, 1167
BspTNI GGTCTC 2 cut(s) 624, 1549
BsrDI GCAATG 1 cut(s) 1302
BsrFI RCCGGY 2 cut(s) 172, 263
BsrGI TGTACA 2 cut(s) 1096, 1299
BsrI ACTGG 1 cut(s) 739
BssAI RCCGGY 2 cut(s) 172, 263
BssECI CCNNGG 6 cut(s) 61, 283, 321, 626, 848, 1428
BssMI GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
BssNI GRCGYC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 1092
BssT1I CCWWGG 3 cut(s) 321, 626, 848
Bst2BI CACGAG 1 cut(s) 1092
Bst2UI CCWGG 3 cut(s) 62, 285, 1485
Bst4CI ACNGT 4 cut(s) 146, 618, 987, 1262
Bst6I CTCTTC 2 cut(s) 26, 429
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstAUI TGTACA 2 cut(s) 1096, 1299
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 3 cut(s) 6, 1155, 1563
BstEII GGTNACC 1 cut(s) 1407
BstF5I GGATG 7 cut(s) 317, 778, 859, 916, 1227, 1246, 1287
BstKTI GATC 8 cut(s) 274, 349, 378, 409, 846, 1020, 1162, 1336
BstMAI GTCTC 5 cut(s) 9, 130, 624, 707, 1549
BstMBI GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
BstMWI GCNNNNNNNGC 2 cut(s) 575, 1112
BstNI CCWGG 3 cut(s) 62, 285, 1485
BstNSI RCATGY 2 cut(s) 342, 1278
BstPAI GACNNNNGTC 2 cut(s) 63, 1449
BstPI GGTNACC 1 cut(s) 1407
BstSCI CCNGG 4 cut(s) 60, 283, 927, 1483
BstV1I GCAGC 3 cut(s) 937, 1099, 1294
BstX2I RGATCY 2 cut(s) 346, 1159
BstYI RGATCY 2 cut(s) 346, 1159
BsuI GTATCC 1 cut(s) 1170
BsuRI GGCC 1 cut(s) 133
BtsCI GGATG 7 cut(s) 317, 778, 859, 916, 1227, 1246, 1287
BtsIMutI CAGTG 2 cut(s) 483, 1347
BveI ACCTGC 1 cut(s) 1111
Cac8I GCNNGC 1 cut(s) 229
Cfr10I RCCGGY 2 cut(s) 172, 263
CsiI ACCWGGT 1 cut(s) 1483
Csp6I GTAC 4 cut(s) 1097, 1152, 1300, 1372
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 8 cut(s) 129, 339, 467, 809, 1003, 1078, 1275, 1516
CviQI GTAC 4 cut(s) 1097, 1152, 1300, 1372
DdeI CTNAG 3 cut(s) 6, 1155, 1563
DpnI GATC 8 cut(s) 273, 348, 377, 408, 845, 1019, 1161, 1335
DpnII GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
Eam1104I CTCTTC 2 cut(s) 26, 429
EarI CTCTTC 2 cut(s) 26, 429
Eco130I CCWWGG 3 cut(s) 321, 626, 848
Eco31I GGTCTC 2 cut(s) 624, 1549
Eco32I GATATC 3 cut(s) 259, 925, 995
Eco57I CTGAAG 1 cut(s) 1400
Eco91I GGTNACC 1 cut(s) 1407
EcoO65I GGTNACC 1 cut(s) 1407
EcoRI GAATTC 1 cut(s) 1352
EcoRII CCWGG 3 cut(s) 60, 283, 1483
EcoRV GATATC 3 cut(s) 259, 925, 995
EcoT14I CCWWGG 3 cut(s) 321, 626, 848
ErhI CCWWGG 3 cut(s) 321, 626, 848
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 8 cut(s) 132, 342, 470, 812, 1006, 1081, 1278, 1519
FalI AAGNNNNNCTT 6 cut(s) 237, 269, 1425, 1457, 1430, 1462
FaqI GGGAC 4 cut(s) 266, 398, 520, 573
FatI CATG 8 cut(s) 128, 338, 466, 808, 1002, 1077, 1274, 1515
FauNDI CATATG 2 cut(s) 594, 1108
FbaI TGATCA 1 cut(s) 1333
Fnu4HI GCNGC 3 cut(s) 951, 1113, 1308
FokI GGATG 7 cut(s) 304, 785, 866, 903, 1214, 1253, 1274
Fsp4HI GCNGC 3 cut(s) 951, 1113, 1308
FspBI CTAG 4 cut(s) 38, 402, 1028, 1460
GluI GCNGC 3 cut(s) 951, 1113, 1308
HaeIII GGCC 1 cut(s) 133
HapII CCGG 3 cut(s) 173, 264, 928
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 8 cut(s) 132, 342, 470, 812, 1006, 1081, 1278, 1519
HincII GTYRAC 2 cut(s) 58, 94
HindII GTYRAC 2 cut(s) 58, 94
HindIII AAGCTT 1 cut(s) 1439
HinfI GANTC 8 cut(s) 425, 688, 784, 800, 1090, 1146, 1391, 1402
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 3 cut(s) 173, 264, 928
HphI GGTGA 7 cut(s) 253, 677, 742, 809, 836, 1216, 1475
Hpy166II GTNNAC 5 cut(s) 58, 94, 1089, 1097, 1374
Hpy188I TCNGA 4 cut(s) 9, 108, 1364, 1380
Hpy188III TCNNGA 7 cut(s) 254, 275, 495, 583, 804, 920, 1163
Hpy8I GTNNAC 5 cut(s) 58, 94, 1089, 1097, 1374
Hpy99I CGWCG 1 cut(s) 1262
HpyAV CCTTC 6 cut(s) 454, 763, 871, 1427, 1542, 1569
HpyCH4III ACNGT 4 cut(s) 146, 618, 987, 1262
HpyCH4IV ACGT 3 cut(s) 279, 509, 716
HpyCH4V TGCA 6 cut(s) 362, 658, 965, 1106, 1295, 1422
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 1112
HpyF3I CTNAG 3 cut(s) 6, 1155, 1563
HpySE526I ACGT 3 cut(s) 279, 509, 716
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 8 cut(s) 132, 342, 470, 812, 1006, 1081, 1278, 1519
Ksp22I TGATCA 1 cut(s) 1333
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
LmnI GCTCC 2 cut(s) 463, 865
Lsp1109I GCAGC 3 cut(s) 937, 1099, 1294
LweI GCATC 3 cut(s) 99, 1045, 1357
MabI ACCWGGT 1 cut(s) 1483
MaeI CTAG 4 cut(s) 38, 402, 1028, 1460
MaeII ACGT 3 cut(s) 279, 509, 716
MaeIII GTNAC 8 cut(s) 190, 275, 531, 730, 1218, 1345, 1407, 1479
MalI GATC 8 cut(s) 273, 348, 377, 408, 845, 1019, 1161, 1335
MboI GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
MboII GAAGA 9 cut(s) 13, 16, 95, 296, 446, 662, 697, 839, 1196
MflI RGATCY 2 cut(s) 346, 1159
MluCI AATT 7 cut(s) 446, 571, 883, 1352, 1455, 1525, 1546
MlyI GAGTC 4 cut(s) 1084, 1140, 1396, 1400
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 4 cut(s) 93, 234, 642, 1137
MslI CAYNNNNRTG 4 cut(s) 597, 663, 839, 1082
MspA1I CMGCKG 1 cut(s) 1014
MspI CCGG 3 cut(s) 173, 264, 928
MspR9I CCNGG 4 cut(s) 62, 285, 929, 1485
Mva1269I GAATGC 3 cut(s) 504, 571, 658
MvaI CCWGG 3 cut(s) 62, 285, 1485
MwoI GCNNNNNNNGC 2 cut(s) 575, 1112
NciI CCSGG 1 cut(s) 929
NdeI CATATG 2 cut(s) 594, 1108
NdeII GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
NlaIII CATG 8 cut(s) 132, 342, 470, 812, 1006, 1081, 1278, 1519
NmuCI GTSAC 3 cut(s) 275, 730, 1345
NspI RCATGY 2 cut(s) 342, 1278
PciI ACATGT 2 cut(s) 338, 1274
PctI GAATGC 3 cut(s) 504, 571, 658
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 4 cut(s) 425, 688, 784, 800
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 3 cut(s) 952, 1114, 1309
PleI GAGTC 4 cut(s) 1084, 1140, 1396, 1399
PpsI GAGTC 4 cut(s) 1084, 1140, 1396, 1399
PscI ACATGT 2 cut(s) 338, 1274
PshAI GACNNNNGTC 2 cut(s) 63, 1449
PsiI TTATAA 1 cut(s) 1491
Psp6I CCWGG 3 cut(s) 60, 283, 1483
PspEI GGTNACC 1 cut(s) 1407
PspGI CCWGG 3 cut(s) 60, 283, 1483
PsuI RGATCY 2 cut(s) 346, 1159
PvuII CAGCTG 1 cut(s) 1014
RsaI GTAC 4 cut(s) 1098, 1153, 1301, 1373
RsaNI GTAC 4 cut(s) 1097, 1152, 1300, 1372
RseI CAYNNNNRTG 4 cut(s) 597, 663, 839, 1082
SaqAI TTAA 4 cut(s) 93, 234, 642, 1137
SatI GCNGC 3 cut(s) 951, 1113, 1308
Sau3AI GATC 8 cut(s) 271, 346, 375, 406, 843, 1017, 1159, 1333
SchI GAGTC 4 cut(s) 1084, 1140, 1396, 1400
ScrFI CCNGG 4 cut(s) 62, 285, 929, 1485
SexAI ACCWGGT 1 cut(s) 1483
SfaNI GCATC 3 cut(s) 99, 1045, 1357
SmiMI CAYNNNNRTG 4 cut(s) 597, 663, 839, 1082
SmlI CTYRAG 1 cut(s) 894
SmoI CTYRAG 1 cut(s) 894
Sse9I AATT 7 cut(s) 446, 571, 883, 1352, 1455, 1525, 1546
SsiI CCGC 2 cut(s) 631, 677
SspMI CTAG 4 cut(s) 38, 402, 1028, 1460
StyD4I CCNGG 4 cut(s) 60, 283, 927, 1483
StyI CCWWGG 3 cut(s) 321, 626, 848
TaaI ACNGT 4 cut(s) 146, 618, 987, 1262
TaiI ACGT 3 cut(s) 282, 512, 719
TaqI TCGA 5 cut(s) 683, 691, 1020, 1268, 1320
TasI AATT 7 cut(s) 446, 571, 883, 1352, 1455, 1525, 1546
TatI WGTACW 2 cut(s) 1096, 1299
TfiI GAWTC 4 cut(s) 425, 688, 784, 800
Tru1I TTAA 4 cut(s) 93, 234, 642, 1137
Tru9I TTAA 4 cut(s) 93, 234, 642, 1137
TscAI CASTG 2 cut(s) 483, 1354
TseFI GTSAC 3 cut(s) 275, 730, 1345
TseI GCWGC 3 cut(s) 950, 1112, 1307
Tsp45I GTSAC 3 cut(s) 275, 730, 1345
TspDTI ATGAA 5 cut(s) 258, 296, 870, 1276, 1532
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 2 cut(s) 483, 1354
XapI RAATTY 3 cut(s) 571, 1352, 1455
XceI RCATGY 2 cut(s) 342, 1278
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 4 cut(s) 38, 402, 1028, 1460
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.