Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Reverse (-)

52751492 .. 52755073

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0355300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAGAAATGTTGTGAGTTCTGCAGAGCATTAAGGCCGGTAGTGTACTGTAAAGCTGATGCAGCACATCTTTGCCTATCTTGTGATGCAAAGATCCATTCGGCTAACACAGTTTTCAACCGGCATCAGCGCACTGTCTTATGCGAATCCTGCCAAGGCCGCCCTGCTTATGTTCAGTGTTTGGATCACAGAATGTTTATGTGCAATGCCTGTGACAGGAGCCAGCACACGTCATCTTCCCAACATCATCACAAACGCACTATCCGGAGTTACACAGATTGCCCGTCTGCCAAGGATTTTGCAGCATTGTGGGGTTTCCAATCAAATGAGATAGATAACAAGACTCTATCCACCTCTTGTGGTTCTTGTGACTCGAGTGTGGTAAGCTATGATATTCATGGGCAGTCTTGCTCACAAATTGAATGTCTTTCAGGTGGTGCTCGGTTTGAAATGGGATCGACCAGTAAACAATACGAGATATATTGTAAAGGTGAAGAGCATAAGAAGACTGGTTTTATTCTGCACCAGATACTTGACTTGGAAAGGCTGCAGCTAGCCAAAGGGAATAGCCCTTCAGCACAGAGTGACCTATCTTCTTCAGCACATCATACTTGGAACAGCTTTCATGAGAATCTTGATTGGCATTTACAACATTGCGAGACTACTGGTACTAACTTTCAGCTAAATGAGAGTCTGCTTCAGGATCCGAAAGATGATCCTTTGCCATTTCTATTTTCTGAAGCGGAACATTTACCATCAAATTCAACTATTGGACTTCCATTGCAGACAGAATCCATTTGGCAGTGCAGAAGTCCGGTTCAAAGTAGTCAGCTGTGGTCTCAAAATATGCAAGACCTTGGGGTTTGTGAAGAGCTTGTTTGTCACGACGATTTCAACATACCTGATGTTGATTTGACATTCCGAAATTTCGAGGAACTCTTTGGAGGTGATCAAGATCCTACCAGATTGCTGCTTGATGATAAAGATGTCTCATATTCCTCCATGGAGAGGGACATGTCCCTCGATAAATCAGATGACTGGAATTCAAGAGCAATGGTGGTATGGATTAGGACTTCCACTGTTTCCTTTCTTACGAATGAAATGATGTATCAGAGGCTTCATCCATGTACCTTACTCAGCCTGCAGACTTCGACAAAGATACCAGTGCCTGTAACAAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

44.72

Weight (kDa)

5.5

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	264
AciI	CCGC	2 cut(s)	160, 743
AclWI	GGATC	7 cut(s)	88, 192, 463, 698, 710, 711, 950
AcsI	RAATTY	3 cut(s)	760, 925, 1042
AcuI	CTGAAG	4 cut(s)	558, 582, 683, 759
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	47, 670, 1129
AfiI	CCNNNNNNNGG	2 cut(s)	216, 1008
AflIII	ACRYGT	2 cut(s)	228, 1014
AgsI	TTSAA	7 cut(s)	118, 422, 449, 765, 821, 895, 1047
AjiI	CACGTC	1 cut(s)	231
AluBI	AGCT	7 cut(s)	56, 387, 553, 621, 682, 832, 874
AluI	AGCT	7 cut(s)	56, 387, 553, 621, 682, 832, 874
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	3 cut(s)	653, 843, 994
AlwI	GGATC	7 cut(s)	88, 192, 463, 698, 710, 711, 950
AlwNI	CAGNNNCTG	1 cut(s)	1169
Ama87I	CYCGRG	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	264
AoxI	GGCC	2 cut(s)	35, 157
ApeKI	GCWGC	5 cut(s)	62, 302, 547, 550, 970
ApoI	RAATTY	3 cut(s)	760, 925, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AspLEI	GCGC	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	503, 959
AsuNHI	GCTAGC	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	5 cut(s)	74, 314, 534, 562, 957
BccI	CCATC	1 cut(s)	763
BclI	TGATCA	1 cut(s)	949
BcoDI	GTCTC	3 cut(s)	653, 843, 994
BfaI	CTAG	1 cut(s)	554
BfmI	CTRYAG	3 cut(s)	22, 548, 1142
BisI	GCNGC	6 cut(s)	63, 160, 303, 548, 551, 971
BlsI	GCNGC	6 cut(s)	64, 161, 304, 549, 552, 972
BmeT110I	CYCGRG	1 cut(s)	373
BmgBI	CACGTC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	221, 705
BmsI	GCATC	3 cut(s)	49, 76, 133
BmtI	GCTAGC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	954
BsaI	GGTCTC	1 cut(s)	843
BsaJI	CCNNGG	4 cut(s)	154, 291, 856, 1002
BsaWI	WCCGGW	2 cut(s)	264, 814
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 1008
Bse118I	RCCGGY	2 cut(s)	37, 120
Bse1I	ACTGG	5 cut(s)	462, 514, 670, 1043, 1163
Bse3DI	GCAATG	4 cut(s)	211, 652, 779, 1059
Bse8I	GATNNNNATC	1 cut(s)	954
BseAI	TCCGGA	1 cut(s)	264
BseDI	CCNNGG	4 cut(s)	154, 291, 856, 1002
BseGI	GGATG	1 cut(s)	1120
BseJI	GATNNNNATC	1 cut(s)	954
BseLI	CCNNNNNNNGG	2 cut(s)	216, 1008
BseMI	GCAATG	4 cut(s)	211, 652, 779, 1059
BseMII	CTCAG	1 cut(s)	1150
BseNI	ACTGG	5 cut(s)	462, 514, 670, 1043, 1163
BseXI	GCAGC	5 cut(s)	74, 314, 534, 562, 957
BsgI	GTGCAG	2 cut(s)	506, 826
BshFI	GGCC	2 cut(s)	37, 159
BsiHKAI	GWGCWC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	373
BsiSI	CCGG	4 cut(s)	38, 121, 265, 815
BslFI	GGGAC	2 cut(s)	1003, 1025
BslI	CCNNNNNNNGG	2 cut(s)	216, 1008
BsmAI	GTCTC	3 cut(s)	653, 843, 994
BsmFI	GGGAC	2 cut(s)	1003, 1025
BsnI	GGCC	2 cut(s)	37, 159
Bso31I	GGTCTC	1 cut(s)	843
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
Bsp19I	CCATGG	1 cut(s)	1002
BspACI	CCGC	2 cut(s)	160, 743
BspANI	GGCC	2 cut(s)	37, 159
BspCNI	CTCAG	1 cut(s)	1149
BspEI	TCCGGA	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	221, 705
BspMAI	CTGCAG	3 cut(s)	26, 552, 1146
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	7 cut(s)	88, 192, 463, 698, 710, 711, 950
BspQI	GCTCTTC	2 cut(s)	489, 864
BspTNI	GGTCTC	1 cut(s)	843
BsrDI	GCAATG	4 cut(s)	211, 652, 779, 1059
BsrFI	RCCGGY	2 cut(s)	37, 120
BsrI	ACTGG	5 cut(s)	462, 514, 670, 1043, 1163
BssAI	RCCGGY	2 cut(s)	37, 120
BssECI	CCNNGG	4 cut(s)	154, 291, 856, 1002
BssMI	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
BssT1I	CCWWGG	4 cut(s)	154, 291, 856, 1002
Bst4CI	ACNGT	4 cut(s)	50, 112, 136, 1081
Bst6I	CTCTTC	2 cut(s)	489, 864
BstC8I	GCNNGC	3 cut(s)	224, 555, 1142
BstDEI	CTNAG	1 cut(s)	1136
BstDSI	CCRYGG	1 cut(s)	1002
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	1120
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	7 cut(s)	96, 187, 458, 706, 718, 952, 958
BstMAI	GTCTC	3 cut(s)	653, 843, 994
BstMBI	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 150, 159
BstNSI	RCATGY	1 cut(s)	1018
BstSFI	CTRYAG	3 cut(s)	22, 548, 1142
BstV1I	GCAGC	5 cut(s)	74, 314, 534, 562, 957
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	3 cut(s)	93, 703, 955
BstYI	RGATCY	3 cut(s)	93, 703, 955
BsuRI	GGCC	2 cut(s)	37, 159
BtgI	CCRYGG	1 cut(s)	1002
BtrI	CACGTC	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	1120
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	5 cut(s)	132, 182, 809, 1077, 1170
Cac8I	GCNNGC	3 cut(s)	224, 555, 1142
CaiI	CAGNNNCTG	1 cut(s)	1169
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	1 cut(s)	132
Cfr10I	RCCGGY	2 cut(s)	37, 120
Csp6I	GTAC	3 cut(s)	46, 669, 1128
CviAII	CATG	5 cut(s)	398, 626, 1003, 1015, 1125
CviQI	GTAC	3 cut(s)	46, 669, 1128
DdeI	CTNAG	1 cut(s)	1136
DpnI	GATC	7 cut(s)	95, 186, 457, 705, 717, 951, 957
DpnII	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
DraIII	CACNNNGTG	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	489, 864
EarI	CTCTTC	2 cut(s)	489, 864
Eco130I	CCWWGG	4 cut(s)	154, 291, 856, 1002
Eco31I	GGTCTC	1 cut(s)	843
Eco57I	CTGAAG	4 cut(s)	558, 582, 683, 759
Eco88I	CYCGRG	1 cut(s)	373
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	1042
EcoT14I	CCWWGG	4 cut(s)	154, 291, 856, 1002
ErhI	CCWWGG	4 cut(s)	154, 291, 856, 1002
FaeI	CATG	5 cut(s)	401, 629, 1006, 1018, 1128
FaqI	GGGAC	2 cut(s)	1003, 1025
FatI	CATG	5 cut(s)	397, 625, 1002, 1014, 1124
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	6 cut(s)	63, 160, 303, 548, 551, 971
FokI	GGATG	1 cut(s)	1107
Fsp4HI	GCNGC	6 cut(s)	63, 160, 303, 548, 551, 971
FspBI	CTAG	1 cut(s)	554
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	6 cut(s)	63, 160, 303, 548, 551, 971
HaeIII	GGCC	2 cut(s)	37, 159
HapII	CCGG	4 cut(s)	38, 121, 265, 815
HhaI	GCGC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	401, 629, 1006, 1018, 1128
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	6 cut(s)	146, 343, 371, 631, 691, 791
HpaII	CCGG	4 cut(s)	38, 121, 265, 815
HphI	GGTGA	2 cut(s)	503, 959
Hpy166II	GTNNAC	2 cut(s)	46, 467
Hpy188I	TCNGA	5 cut(s)	708, 739, 923, 1033, 1113
Hpy188III	TCNNGA	7 cut(s)	265, 626, 635, 701, 884, 953, 1047
Hpy8I	GTNNAC	2 cut(s)	46, 467
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	1 cut(s)	582
HpyCH4III	ACNGT	4 cut(s)	50, 112, 136, 1081
HpyCH4IV	ACGT	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 150, 159
HpyF3I	CTNAG	1 cut(s)	1136
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	5 cut(s)	401, 629, 1006, 1018, 1128
HspAI	GCGC	1 cut(s)	130
Kpn2I	TCCGGA	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
LguI	GCTCTTC	2 cut(s)	489, 864
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	5 cut(s)	74, 314, 534, 562, 957
LweI	GCATC	3 cut(s)	49, 76, 133
MaeI	CTAG	1 cut(s)	554
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	6 cut(s)	212, 269, 368, 584, 881, 1171
MalI	GATC	7 cut(s)	95, 186, 457, 705, 717, 951, 957
MboI	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
MboII	GAAGA	6 cut(s)	228, 506, 517, 585, 588, 881
MflI	RGATCY	3 cut(s)	93, 703, 955
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	4 cut(s)	417, 760, 925, 1042
MlyI	GAGTC	3 cut(s)	337, 365, 700
MnlI	CCTC	7 cut(s)	364, 925, 938, 1002, 1009, 1031, 1107
MroI	TCCGGA	1 cut(s)	264
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	832
MspI	CCGG	4 cut(s)	38, 121, 265, 815
MwoI	GCNNNNNNNGC	3 cut(s)	62, 150, 159
NcoI	CCATGG	1 cut(s)	1002
NdeII	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	5 cut(s)	401, 629, 1006, 1018, 1128
NlaIV	GGNNCC	2 cut(s)	221, 705
NmuCI	GTSAC	4 cut(s)	212, 368, 584, 881
NspI	RCATGY	1 cut(s)	1018
PaeR7I	CTCGAG	1 cut(s)	373
PagI	TCATGA	1 cut(s)	625
PciI	ACATGT	1 cut(s)	1014
PciSI	GCTCTTC	2 cut(s)	489, 864
PfeI	GAWTC	3 cut(s)	146, 631, 791
PkrI	GCNGC	6 cut(s)	64, 161, 304, 549, 552, 972
PleI	GAGTC	3 cut(s)	337, 365, 699
PpsI	GAGTC	3 cut(s)	337, 365, 699
PscI	ACATGT	1 cut(s)	1014
PspN4I	GGNNCC	2 cut(s)	221, 705
PspXI	VCTCGAGB	1 cut(s)	373
PstI	CTGCAG	3 cut(s)	26, 552, 1146
PstNI	CAGNNNCTG	1 cut(s)	1169
PsuI	RGATCY	3 cut(s)	93, 703, 955
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	3 cut(s)	47, 670, 1129
RsaNI	GTAC	3 cut(s)	46, 669, 1128
SapI	GCTCTTC	2 cut(s)	489, 864
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	63, 160, 303, 548, 551, 971
Sau3AI	GATC	7 cut(s)	93, 184, 455, 703, 715, 949, 955
SchI	GAGTC	3 cut(s)	337, 365, 700
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	3 cut(s)	49, 76, 133
SfcI	CTRYAG	3 cut(s)	22, 548, 1142
Sfr274I	CTCGAG	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	4 cut(s)	417, 760, 925, 1042
SsiI	CCGC	2 cut(s)	160, 743
SspMI	CTAG	1 cut(s)	554
StyI	CCWWGG	4 cut(s)	154, 291, 856, 1002
TaaI	ACNGT	4 cut(s)	50, 112, 136, 1081
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	5 cut(s)	374, 458, 930, 1023, 1151
TasI	AATT	4 cut(s)	417, 760, 925, 1042
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	3 cut(s)	146, 631, 791
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	5 cut(s)	139, 182, 809, 1084, 1170
TseFI	GTSAC	4 cut(s)	212, 368, 584, 881
TseI	GCWGC	5 cut(s)	62, 302, 547, 550, 970
Tsp45I	GTSAC	4 cut(s)	212, 368, 584, 881
TspDTI	ATGAA	4 cut(s)	386, 614, 1109, 1113
TspRI	CASTG	5 cut(s)	139, 182, 809, 1084, 1170
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	3 cut(s)	760, 925, 1042
XceI	RCATGY	1 cut(s)	1018
XhoI	CTCGAG	1 cut(s)	373
XspI	CTAG	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.