Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007130.1

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Reverse (-)

9448 .. 10579

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007130.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcagcaagtaattcatacgaaatgacctcgtgggcagatcaatgggacaacagccctgacccgtatccggctaactatgatcagtccaacacgagtacaaaggccaagtataccaaaaaggtagaggaagggtttgggaagacgaaatcagtggcgtcgagtgggatgaagaaggtgaagacaggagctcatgttggttttcactggatcaaggagaagtaccacaagactaccggaaagcacctcaatctctctcccaatcttcttcatttccttttgcgtgctaaagaagtaaggagtaaagagtacggactcctgtcagtggaagcgattttgaagagcaatccagacccggttcgtgcttctgaggccaagaacagctctgatggagatggtggtgcaaaggctaagtatatcaaaaaaagtggtagaatgttttggcagacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.73

Weight (kDa)

9.67

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	3 cut(s)	100, 224, 311
AfiI	CCNNNNNNNGG	2 cut(s)	70, 325
AgsI	TTSAA	1 cut(s)	340
AluBI	AGCT	2 cut(s)	191, 384
AluI	AGCT	2 cut(s)	191, 384
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	105, 372
ApeKI	GCWGC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	193
BauI	CACGAG	2 cut(s)	31, 94
BbsI	GAAGAC	2 cut(s)	149, 188
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	383, 389
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	356
BoxI	GACNNNNGTC	1 cut(s)	319
BpiI	GAAGAC	2 cut(s)	149, 188
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 325
Bse1I	ACTGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	70, 325
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	107, 374
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	71, 237, 356
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	70, 325
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	107, 374
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	40, 82, 210
BspANI	GGCC	2 cut(s)	107, 374
BspCNI	CTCAG	1 cut(s)	361
BspPI	GGATC	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	40, 82, 210
BssNAI	GTATAC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	158
BssSI	CACGAG	2 cut(s)	31, 94
Bst1107I	GTATAC	1 cut(s)	114
Bst2BI	CACGAG	2 cut(s)	31, 94
Bst6I	CTCTTC	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	369, 411
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	3 cut(s)	43, 85, 213
BstMBI	GATC	3 cut(s)	40, 82, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstPAI	GACNNNNGTC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	149, 188
BstZ17I	GTATAC	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	107, 374
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	3 cut(s)	159, 205, 330
Cac8I	GCNNGC	1 cut(s)	285
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	99, 223, 310
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	7 cut(s)	57, 74, 107, 191, 374, 384, 410
CviKI_1	RGCY	7 cut(s)	57, 74, 107, 191, 374, 384, 410
CviQI	GTAC	3 cut(s)	99, 223, 310
DdeI	CTNAG	2 cut(s)	369, 411
DpnI	GATC	3 cut(s)	42, 84, 212
DpnII	GATC	3 cut(s)	40, 82, 210
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	1 cut(s)	197
FaiI	YATR	5 cut(s)	19, 81, 114, 195, 417
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	107, 374
HapII	CCGG	3 cut(s)	71, 237, 356
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	3 cut(s)	71, 237, 356
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	2 cut(s)	370, 388
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	125, 169
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	369, 411
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	40, 82, 210
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	72, 84, 171, 193, 250, 332, 363, 369
Lsp1109I	GCAGC	1 cut(s)	17
MalI	GATC	3 cut(s)	42, 84, 212
MboI	GATC	3 cut(s)	40, 82, 210
MboII	GAAGA	6 cut(s)	154, 184, 193, 257, 260, 352
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	1 cut(s)	309
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	40, 121, 257, 364
MseI	TTAA	1 cut(s)	451
MspI	CCGG	3 cut(s)	71, 237, 356
MspR9I	CCNGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	3 cut(s)	40, 82, 210
NlaIII	CATG	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	193
RsaI	GTAC	3 cut(s)	100, 224, 311
RsaNI	GTAC	3 cut(s)	99, 223, 310
SacI	GAGCTC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	40, 82, 210
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	6 cut(s)	32, 126, 180, 193, 249, 386
Sse9I	AATT	1 cut(s)	13
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	354
TaqI	TCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	13
TatI	WGTACW	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TscAI	CASTG	3 cut(s)	159, 212, 330
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	6, 185, 260
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	159, 212, 330
XmiI	GTMKAC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.