Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Forward (+)

64397544 .. 64398789

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAGCAAGTAACTCATACGAAATGACCTCGTGGGCAGATCAATGGGACAACAGCCCTGACCCGTATCCGGCTAACTATGATCAGTCGAACACGAGTACAAAGGCCAAGTATACCAAAAAGGTAGAGGAAGGGTTTGGGAAGACGAAATCAGTGGCGTCGAGTGGGATGAAGAAGGTGAAGACAGGAGCTCATGTTGGTTTTCACTGGATCAAGGAGAAGTACCACAAGACTACCGGAAAGCAGAGTATAGAGTGCAGACTCCTGTCAATGGAAGCGATTTTGAAGAGCAATCCAGACCCGGTGCGTGCTTCTGAGGCCAAGAACAGCTCTGATGGAGATGGAGGTGCAAAGGCTAAGTACATCAAAAAAGAGGGAGAATGTTTTGGCAGACTTAAAGAAAAAACATCAAATGGCGTGAACAGGGTCAAGATAGGAGCTCATTTGGGTCTTCACTGGATCAAAGACAAGTACTATAATAAGACTACCAAAAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.53

Weight (kDa)

9.62

Isoelectric Point (pI)

29.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	218, 467
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	4 cut(s)	100, 224, 362, 473
AfiI	CCNNNNNNNGG	2 cut(s)	70, 271
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	3 cut(s)	191, 330, 440
AluI	AGCT	3 cut(s)	191, 330, 440
Alw21I	GWGCWC	2 cut(s)	193, 442
AlwI	GGATC	2 cut(s)	218, 467
AoxI	GGCC	2 cut(s)	105, 318
ApeKI	GCWGC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	190
BanII	GRGCYC	2 cut(s)	193, 442
BauI	CACGAG	2 cut(s)	31, 94
BbsI	GAAGAC	3 cut(s)	149, 188, 443
Bbv12I	GWGCWC	2 cut(s)	193, 442
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	329, 335
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	302
BoxI	GACNNNNGTC	1 cut(s)	265
BpiI	GAAGAC	3 cut(s)	149, 188, 443
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 271
Bse1I	ACTGG	2 cut(s)	212, 461
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	70, 271
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	212, 461
BseXI	GCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	107, 320
BsiHKAI	GWGCWC	2 cut(s)	193, 442
BsiSI	CCGG	3 cut(s)	71, 237, 302
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	70, 271
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	107, 320
Bsp1286I	GDGCHC	2 cut(s)	193, 442
Bsp143I	GATC	4 cut(s)	40, 82, 210, 459
BspANI	GGCC	2 cut(s)	107, 320
BspCNI	CTCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	218, 467
BspQI	GCTCTTC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	212, 461
BssMI	GATC	4 cut(s)	40, 82, 210, 459
BssNAI	GTATAC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	158
BssSI	CACGAG	2 cut(s)	31, 94
Bst1107I	GTATAC	1 cut(s)	114
Bst2BI	CACGAG	2 cut(s)	31, 94
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	315, 357
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	43, 85, 213, 462
BstMBI	GATC	4 cut(s)	40, 82, 210, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	3 cut(s)	149, 188, 443
BstZ17I	GTATAC	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	107, 320
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	3 cut(s)	159, 205, 454
Cac8I	GCNNGC	1 cut(s)	309
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	4 cut(s)	99, 223, 361, 472
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	8 cut(s)	57, 74, 107, 191, 320, 330, 356, 440
CviKI_1	RGCY	8 cut(s)	57, 74, 107, 191, 320, 330, 356, 440
CviQI	GTAC	4 cut(s)	99, 223, 361, 472
DdeI	CTNAG	2 cut(s)	315, 357
DpnI	GATC	4 cut(s)	42, 84, 212, 461
DpnII	GATC	4 cut(s)	40, 82, 210, 459
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	2 cut(s)	191, 440
Eco24I	GRGCYC	2 cut(s)	193, 442
Eco53kI	GAGCTC	2 cut(s)	191, 440
EcoICRI	GAGCTC	2 cut(s)	191, 440
EcoT38I	GRGCYC	2 cut(s)	193, 442
FaeI	CATG	1 cut(s)	197
FaiI	YATR	6 cut(s)	19, 81, 114, 195, 251, 477
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	2 cut(s)	193, 442
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	107, 320
HapII	CCGG	3 cut(s)	71, 237, 302
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	3 cut(s)	71, 237, 302
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	114, 421
Hpy188I	TCNGA	2 cut(s)	316, 334
Hpy188III	TCNNGA	2 cut(s)	296, 430
Hpy8I	GTNNAC	2 cut(s)	114, 421
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	125, 169
HpyCH4V	TGCA	2 cut(s)	258, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	315, 357
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	40, 82, 210, 459
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	188, 437
Lsp1109I	GCAGC	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	4 cut(s)	42, 84, 212, 461
MboI	GATC	4 cut(s)	40, 82, 210, 459
MboII	GAAGA	5 cut(s)	154, 184, 193, 298, 443
MhlI	GDGCHC	2 cut(s)	193, 442
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	40, 121, 310, 338, 367
MseI	TTAA	1 cut(s)	396
MspI	CCGG	3 cut(s)	71, 237, 302
MspR9I	CCNGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	4 cut(s)	40, 82, 210, 459
NlaIII	CATG	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshAI	GACNNNNGTC	1 cut(s)	265
Psp124BI	GAGCTC	2 cut(s)	193, 442
RsaI	GTAC	4 cut(s)	100, 224, 362, 473
RsaNI	GTAC	4 cut(s)	99, 223, 361, 472
SacI	GAGCTC	2 cut(s)	193, 442
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	40, 82, 210, 459
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	193, 442
SetI	ASST	7 cut(s)	32, 126, 180, 193, 332, 349, 442
SstI	GAGCTC	2 cut(s)	193, 442
StyD4I	CCNGG	1 cut(s)	300
TaqI	TCGA	2 cut(s)	89, 161
TatI	WGTACW	3 cut(s)	98, 360, 471
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	3 cut(s)	159, 212, 461
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	3 cut(s)	159, 212, 461
XmiI	GTMKAC	1 cut(s)	113
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.