Rorug06G0427800

protection from non-homologous end joining at telomere

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004204
Physical Location & Seq
Reverse (-)
56428423 .. 56429987
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0427800.1

Sequence Viewer

Length: 471 bp
ATGTCAATAGCACCCTCACTCCCTCGTCTACACTCTCCTTTCCTATGTTGCCCGCTCAAGCTTTCTTCTACCTCTCCTTGTCTTTCCCACAAGTTGGCTCAACGCTCGCTCAAGTTATATCCATGCATCAGAGCTGTTGATCTTGATCAAAACACGGTAGTGGCAATCTCAGTAGGGCTGGTGAGTGTTGCGGTTGGGATAGGCATTCCGGTTTTCTACGAATCTCAAATCGATAATGCTTCCAAGCGAGACAATACTCAGCCCTGCTTCCCTTGCAATGGAACAGGCGCACAAAGATGCCGATTTTGCACTGGAAGTGGCACGGTCACGGTAGAGCTTGGTGGGGATGAGAAAGAAGTGTCTAAATGCATTAACTGTGAAGGGTTTGGATCATTTACATGCACCACATGTCAAGGTTCTGGGATTCAACCTCGATACCTTGATCGCAGAGAATTCAAAGACGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000228 GO:0000278 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008409 GO:0009892 GO:0009987 GO:0010605 GO:0010639 GO:0010833 GO:0015630 GO:0016043 GO:0016233 GO:0016604 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0022402 GO:0022616 GO:0031323 GO:0031324 GO:0031627 GO:0031848 GO:0031860 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042162 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0061730 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0098847 GO:0140097 GO:1901360 GO:1901363 GO:1903047 GO:1904356 GO:1904357 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko04072 ko04080 ko04218 ko04724 map04072 map04080 map04218 map04724
Pfam Domains
Protein Families
DRMBL Lactamase_B_2

Protein Analysis

156

Amino Acids

16.84

Weight (kDa)

7.44

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF5351 PF17302 100 - 131 7.7e-08 Family of unknown function (DUF5351)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 28
AciI CCGC 2 cut(s) 53, 191
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 94, 278
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 2 cut(s) 428, 457
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 3 cut(s) 61, 134, 337
AluI AGCT 3 cut(s) 61, 134, 337
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 1 cut(s) 397
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 193
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 243
BmsI GCATC 2 cut(s) 135, 287
BpuEI CTTGAG 2 cut(s) 41, 95
Bsa29I ATCGAT 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 144
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 278
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 231
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 94, 278
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 183, 272
BseNI ACTGG 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 231
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 94, 278
BsmAI GTCTC 1 cut(s) 243
BsmI GAATGC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 139, 145, 389, 442
BspACI CCGC 2 cut(s) 53, 191
BspCNI CTCAG 2 cut(s) 182, 271
BspDI ATCGAT 1 cut(s) 231
BspPI GGATC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 316
BssMI GATC 4 cut(s) 139, 145, 389, 442
Bst4CI ACNGT 4 cut(s) 157, 325, 331, 377
BstC8I GCNNGC 2 cut(s) 53, 107
BstDEI CTNAG 2 cut(s) 169, 258
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 4 cut(s) 142, 148, 392, 445
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 4 cut(s) 139, 145, 389, 442
BstMWI GCNNNNNNNGC 2 cut(s) 273, 306
BstNSI RCATGY 2 cut(s) 402, 411
Bsu15I ATCGAT 1 cut(s) 231
BsuTUI ATCGAT 1 cut(s) 231
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 53, 107
CfoI GCGC 1 cut(s) 290
ClaI ATCGAT 1 cut(s) 231
CviAII CATG 3 cut(s) 123, 399, 408
CviJI RGCY 6 cut(s) 61, 98, 134, 178, 262, 337
CviKI_1 RGCY 6 cut(s) 61, 98, 134, 178, 262, 337
DdeI CTNAG 2 cut(s) 169, 258
DpnI GATC 4 cut(s) 141, 147, 391, 444
DpnII GATC 4 cut(s) 139, 145, 389, 442
EcoRI GAATTC 1 cut(s) 452
EcoT22I ATGCAT 2 cut(s) 128, 371
FaeI CATG 3 cut(s) 126, 402, 411
FaiI YATR 5 cut(s) 46, 118, 124, 400, 409
FatI CATG 3 cut(s) 122, 398, 407
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 145
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 359
GlaI GCGC 1 cut(s) 289
HapII CCGG 1 cut(s) 209
HhaI GCGC 1 cut(s) 290
Hin1II CATG 3 cut(s) 126, 402, 411
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 221, 424
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 374
HpyCH4III ACNGT 4 cut(s) 157, 325, 331, 377
HpyCH4V TGCA 5 cut(s) 126, 276, 309, 369, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 306
HpyF3I CTNAG 2 cut(s) 169, 258
Hsp92II CATG 3 cut(s) 126, 402, 411
HspAI GCGC 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 139, 145, 389, 442
LpnPI CCDG 6 cut(s) 164, 222, 270, 277, 297, 405
LweI GCATC 2 cut(s) 135, 287
MaeIII GTNAC 1 cut(s) 325
MalI GATC 4 cut(s) 141, 147, 391, 444
MbiI CCGCTC 1 cut(s) 55
MboI GATC 4 cut(s) 139, 145, 389, 442
MboII GAAGA 1 cut(s) 57
MluCI AATT 1 cut(s) 452
MnlI CCTC 4 cut(s) 25, 33, 82, 441
Mph1103I ATGCAT 2 cut(s) 128, 371
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 3 cut(s) 158, 295, 397
MspI CCGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 273, 306
NdeII GATC 4 cut(s) 139, 145, 389, 442
NlaIII CATG 3 cut(s) 126, 402, 411
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 2 cut(s) 128, 371
NspI RCATGY 2 cut(s) 402, 411
OliI CACNNNNGTG 1 cut(s) 158
PciI ACATGT 1 cut(s) 407
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 221, 424
PflMI CCANNNNNTGG 1 cut(s) 94
PscI ACATGT 1 cut(s) 407
RseI CAYNNNNRTG 3 cut(s) 158, 295, 397
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 4 cut(s) 139, 145, 389, 442
SetI ASST 7 cut(s) 63, 74, 136, 339, 418, 433, 441
SfaNI GCATC 2 cut(s) 135, 287
SmiMI CAYNNNNRTG 3 cut(s) 158, 295, 397
SmlI CTYRAG 2 cut(s) 56, 110
SmoI CTYRAG 2 cut(s) 56, 110
Sse9I AATT 1 cut(s) 452
SsiI CCGC 2 cut(s) 53, 191
TaaI ACNGT 4 cut(s) 157, 325, 331, 377
TaqI TCGA 2 cut(s) 231, 433
TasI AATT 1 cut(s) 452
TfiI GAWTC 2 cut(s) 221, 424
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 316
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 1 cut(s) 452
XceI RCATGY 2 cut(s) 402, 411
XmiI GTMKAC 1 cut(s) 28
Zsp2I ATGCAT 2 cut(s) 128, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.