FvH4_4g35190

protection from non-homologous end joining at telomere

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004204
Physical Location & Seq
Forward (+)
32575804 .. 32576562
759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35190.t1

Sequence Viewer

Length: 249 bp
ATGGCAGCAAGTAACTCATACGAGGTGACTTCGTGGGCGGATCAATGGGACGAGGGCCCTGACCCGTATCCGGCTAACTACGATCCGTCCAAGACGAGTACAAAGGCTAAGTATACCAAGAAGGCAGGGGAAGGGCTTGAGAAGACGAAATCGGTAGCGTCGAGTGGGATGAAGAAGGTGAAGACAGGAGCTCATGTTGGTTTTCACTGGATCAAGGACAAGTACCATAAGACTACCGGAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.07

Weight (kDa)

9.43

Isoelectric Point (pI)

12.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AciI CCGC 1 cut(s) 38
AclWI GGATC 3 cut(s) 48, 77, 218
AfaI GTAC 2 cut(s) 100, 224
AfiI CCNNNNNNNGG 1 cut(s) 70
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw21I GWGCWC 1 cut(s) 193
AlwI GGATC 3 cut(s) 48, 77, 218
AoxI GGCC 1 cut(s) 55
ApaI GGGCCC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 55, 56
AsuHPI GGTGA 2 cut(s) 37, 190
BaeGI GKGCMC 1 cut(s) 59
BanII GRGCYC 2 cut(s) 59, 193
BbsI GAAGAC 2 cut(s) 149, 188
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 17
BciVI GTATCC 1 cut(s) 78
BfuI GTATCC 1 cut(s) 78
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 55, 56
BmiI GGNNCC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 149, 188
BpuEI CTTGAG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 71, 237
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 57
Bsp120I GGGCCC 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 59, 193
Bsp143I GATC 3 cut(s) 40, 82, 210
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 48, 77, 218
BsrI ACTGG 1 cut(s) 212
BssMI GATC 3 cut(s) 40, 82, 210
BssNAI GTATAC 1 cut(s) 114
Bst1107I GTATAC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 3 cut(s) 43, 85, 213
BstMBI GATC 3 cut(s) 40, 82, 210
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 2 cut(s) 149, 188
BstZ17I GTATAC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 55, 56
CseI GACGC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 99, 223
CviAII CATG 1 cut(s) 194
CviJI RGCY 5 cut(s) 57, 74, 107, 136, 191
CviKI_1 RGCY 5 cut(s) 57, 74, 107, 136, 191
CviQI GTAC 2 cut(s) 99, 223
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 42, 84, 212
DpnII GATC 3 cut(s) 40, 82, 210
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 2 cut(s) 59, 193
Eco53kI GAGCTC 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 2 cut(s) 55, 56
EcoT38I GRGCYC 2 cut(s) 59, 193
FaeI CATG 1 cut(s) 197
FaiI YATR 4 cut(s) 19, 114, 195, 228
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 193
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 181
FriOI GRGCYC 2 cut(s) 59, 193
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 71, 237
HgaI GACGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 197
HpaII CCGG 2 cut(s) 71, 237
HphI GGTGA 2 cut(s) 37, 190
Hpy166II GTNNAC 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 115, 125, 169
HpyCH4III ACNGT 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 3 cut(s) 40, 82, 210
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 5 cut(s) 72, 84, 111, 171, 193
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 11, 25
MalI GATC 3 cut(s) 42, 84, 212
MboI GATC 3 cut(s) 40, 82, 210
MboII GAAGA 3 cut(s) 154, 184, 193
MhlI GDGCHC 2 cut(s) 59, 193
MnlI CCTC 2 cut(s) 16, 46
MspI CCGG 2 cut(s) 71, 237
NdeII GATC 3 cut(s) 40, 82, 210
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 25
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PkrI GCNGC 1 cut(s) 7
Psp124BI GAGCTC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 57
PspOMI GGGCCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 55, 56
RsaI GTAC 2 cut(s) 100, 224
RsaNI GTAC 2 cut(s) 99, 223
SacI GAGCTC 1 cut(s) 193
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 40, 82, 210
Sau96I GGNCC 2 cut(s) 55, 56
SduI GDGCHC 2 cut(s) 59, 193
SetI ASST 3 cut(s) 27, 180, 193
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 1 cut(s) 38
SstI GAGCTC 1 cut(s) 193
TaaI ACNGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 161
TatI WGTACW 1 cut(s) 98
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.