pycom13g07400

protection from non-homologous end joining at telomere

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004204
Physical Location & Seq
Reverse (-)
4911270 .. 4911518
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07400.1

Sequence Viewer

Length: 249 bp
ATGGCAAGCATCCCGAACCACGAAAACTCATGGGCCGATCAGTGGGACTACAACCCCGACCCTCTTCCTGCTTCCTACACCAAGAGCTCCGGGGGCGGTGCAAAGGCGAAATATGGTAAAAAAGTGGAGGAAGGGTTTGGGAAGACGAAGGCAGTTGCAGCAAACGGCATGAACAAAGTGAAGGTCGGGACTCAATTTGGGTTCCACTGGATCAAGGACAAGTGCCACAAGACTACCGGAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.96

Weight (kDa)

9.55

Isoelectric Point (pI)

14.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 91
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 2 cut(s) 90, 237
BslFI GGGAC 2 cut(s) 59, 202
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 59, 202
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 37, 210
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 37, 210
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 2 cut(s) 40, 213
BstMBI GATC 2 cut(s) 37, 210
BstMWI GCNNNNNNNGC 2 cut(s) 93, 158
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 9
BtsIMutI CAGTG 2 cut(s) 47, 205
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 2 cut(s) 30, 169
CviJI RGCY 2 cut(s) 35, 87
CviKI_1 RGCY 2 cut(s) 35, 87
DpnI GATC 2 cut(s) 39, 212
DpnII GATC 2 cut(s) 37, 210
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 87
EcoT38I GRGCYC 1 cut(s) 89
FaeI CATG 2 cut(s) 33, 172
FaiI YATR 3 cut(s) 31, 114, 170
FaqI GGGAC 2 cut(s) 59, 202
FatI CATG 2 cut(s) 29, 168
Fnu4HI GCNGC 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 35
HapII CCGG 2 cut(s) 90, 237
Hin1II CATG 2 cut(s) 33, 172
HinfI GANTC 1 cut(s) 190
HpaII CCGG 2 cut(s) 90, 237
Hpy188III TCNNGA 2 cut(s) 13, 187
HpyAV CCTTC 3 cut(s) 125, 142, 175
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 101, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 158
Hsp92II CATG 2 cut(s) 33, 172
Kzo9I GATC 2 cut(s) 37, 210
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 81, 103, 193
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 18
MalI GATC 2 cut(s) 39, 212
MboI GATC 2 cut(s) 37, 210
MboII GAAGA 2 cut(s) 56, 154
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 2 cut(s) 72, 121
MspI CCGG 2 cut(s) 90, 237
MspR9I CCNGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 93, 158
NciI CCSGG 1 cut(s) 91
NdeII GATC 2 cut(s) 37, 210
NlaIII CATG 2 cut(s) 33, 172
NlaIV GGNNCC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 33
SacI GAGCTC 1 cut(s) 89
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 37, 210
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 89
SetI ASST 2 cut(s) 89, 186
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 246
TasI AATT 1 cut(s) 194
TscAI CASTG 2 cut(s) 47, 212
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 2 cut(s) 47, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.