Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Reverse (-)

65257170 .. 65257430

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGATCACGGAGACAAGAAATCGAATGGTTACGAGACGACGTCATGGGCAGACCAGTGGGACTACACCAACAACTCGTCGTACCCTGTGGACGTCAAAGGCGGCGAGGGAACCGCAGCCAAGTGCAAGCAGAAGGTCGGCGAAGGCCTCGTGAAGACTAAAGCCGTCGCCTCCACCGGAGTCAAGAAGGTCAAGGATGGCGCCTCCTCCGGTTTCCAGTGGATCAAGGACAAGTATCAGAAGACCACCCAGAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008409 GO:0009892 GO:0009987 GO:0010605 GO:0010639 GO:0010833 GO:0015630 GO:0016043 GO:0016233 GO:0016604 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0022402 GO:0022616 GO:0031323 GO:0031324 GO:0031627 GO:0031848 GO:0031860 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042162 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0061730 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0098847 GO:0140097 GO:1901360 GO:1901363 GO:1903047 GO:1904356 GO:1904357 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04072 ko04080 ko04218 ko04724 map04072 map04080 map04218 map04724

Pfam Domains

Protein Families

DRMBL Lactamase_B_2

Protein Analysis

86

Amino Acids

9.44

Weight (kDa)

9.46

Isoelectric Point (pI)

0.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	44, 96
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	2 cut(s)	102, 114
AclWI	GGATC	2 cut(s)	12, 230
AcyI	GRCGYC	3 cut(s)	41, 93, 201
AfaI	GTAC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	6, 29
AlwI	GGATC	2 cut(s)	12, 230
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	149
BbsI	GAAGAC	2 cut(s)	161, 248
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	6, 29
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	2 cut(s)	103, 117
BlsI	GCNGC	2 cut(s)	104, 118
BmiI	GGNNCC	2 cut(s)	112, 202
BpiI	GAAGAC	2 cut(s)	161, 248
BsaHI	GRCGYC	3 cut(s)	41, 93, 201
BsaWI	WCCGGW	2 cut(s)	176, 209
Bse1I	ACTGG	2 cut(s)	55, 217
BseGI	GGATG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	55, 217
BseRI	GAGGAG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	177, 210
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	6, 29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	4, 222
BspACI	CCGC	2 cut(s)	102, 114
BspANI	GGCC	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	112, 202
BspPI	GGATC	2 cut(s)	12, 230
BspT107I	GGYRCC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	55, 217
BssMI	GATC	2 cut(s)	4, 222
BssNI	GRCGYC	3 cut(s)	41, 93, 201
BssSI	CACGAG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	149
BstACI	GRCGYC	3 cut(s)	41, 93, 201
BstC8I	GCNNGC	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	2 cut(s)	7, 225
BstMAI	GTCTC	2 cut(s)	6, 29
BstMBI	GATC	2 cut(s)	4, 222
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	2 cut(s)	161, 248
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	62, 224
Cac8I	GCNNGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	3 cut(s)	119, 147, 164
CviKI_1	RGCY	3 cut(s)	119, 147, 164
CviQI	GTAC	1 cut(s)	82
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	2 cut(s)	6, 224
DpnII	GATC	2 cut(s)	4, 222
Eco147I	AGGCCT	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	1 cut(s)	48
FaiI	YATR	1 cut(s)	46
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	103, 117
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	103, 117
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	103, 117
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	2 cut(s)	177, 210
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	3 cut(s)	41, 93, 201
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	2 cut(s)	177, 210
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	151, 184
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	3 cut(s)	43, 82, 170
HpyAV	CCTTC	3 cut(s)	127, 137, 181
HpyCH4IV	ACGT	2 cut(s)	41, 93
HpyCH4V	TGCA	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	41, 93
Hsp92I	GRCGYC	3 cut(s)	41, 93, 201
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	4, 222
LpnPI	CCDG	5 cut(s)	68, 99, 190, 223, 230
Lsp1109I	GCAGC	1 cut(s)	128
MaeII	ACGT	2 cut(s)	41, 93
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	6, 224
MboI	GATC	2 cut(s)	4, 222
MboII	GAAGA	2 cut(s)	166, 253
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	100, 158, 181, 214, 217
MspI	CCGG	2 cut(s)	177, 210
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	2 cut(s)	4, 222
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	2 cut(s)	112, 202
PceI	AGGCCT	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	104, 118
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	112, 202
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SatI	GCNGC	2 cut(s)	103, 117
Sau3AI	GATC	2 cut(s)	4, 222
SchI	GAGTC	1 cut(s)	189
SetI	ASST	4 cut(s)	44, 96, 138, 192
SfoI	GGCGCC	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	2 cut(s)	102, 114
SspDI	GGCGCC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	44, 96
TaqI	TCGA	1 cut(s)	23
TauI	GCSGC	1 cut(s)	105
TscAI	CASTG	2 cut(s)	62, 224
TseI	GCWGC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	62, 224
Tth111I	GACNNNGTC	1 cut(s)	40
ZraI	GACGTC	2 cut(s)	42, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.