MD16G1084900.v1.1

protection from non-homologous end joining at telomere

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0004204
Physical Location & Seq
Reverse (-)
5944372 .. 5944626
255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1084900.v1.1.491

Sequence Viewer

Length: 255 bp
ATGGCAAGTATTCCCACTCACGAAAACTCATGGGCCGATCAGTGGGACTACAACCCTGATCCTCTTCCGGCTTCCGTGACCAAGAAGAGCTCCGCCGGCGGCAGCGCAAAGGCGAAATATGGTAAAAAGGTGGAAGAAGGGTTTGGGAAGACTAAAGCAGTTGCAGCAAATGGCATGGCCAAAGTGAAGGTAGGGGCTCGTTTTGGACTCCACTGGATCAAGGACAAGTTCCACAAGACTACCGGAAAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.08

Weight (kDa)

9.89

Isoelectric Point (pI)

10.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 93, 99
AclWI GGATC 2 cut(s) 53, 224
AcoI YGGCCR 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 42
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 2 cut(s) 53, 224
AoxI GGCC 2 cut(s) 33, 177
ApeKI GCWGC 2 cut(s) 102, 164
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 179
BanII GRGCYC 2 cut(s) 92, 199
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 114, 176
BisI GCNGC 3 cut(s) 100, 103, 165
BlsI GCNGC 3 cut(s) 101, 104, 166
BmgT120I GGNCC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 114, 176
BshFI GGCC 2 cut(s) 35, 179
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 3 cut(s) 68, 96, 243
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 35, 179
Bsp1286I GDGCHC 2 cut(s) 92, 199
Bsp143I GATC 3 cut(s) 37, 58, 216
BspACI CCGC 2 cut(s) 93, 99
BspANI GGCC 2 cut(s) 35, 179
BspPI GGATC 2 cut(s) 53, 224
BspQI GCTCTTC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 218
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 3 cut(s) 37, 58, 216
Bst4CI ACNGT 1 cut(s) 252
Bst6I CTCTTC 2 cut(s) 69, 80
BstC8I GCNNGC 1 cut(s) 97
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 3 cut(s) 40, 61, 219
BstMBI GATC 3 cut(s) 37, 58, 216
BstMWI GCNNNNNNNGC 2 cut(s) 96, 164
BstV1I GCAGC 2 cut(s) 114, 176
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 35, 179
BtsIMutI CAGTG 2 cut(s) 47, 211
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 2 cut(s) 30, 175
CviJI RGCY 5 cut(s) 35, 71, 90, 179, 197
CviKI_1 RGCY 5 cut(s) 35, 71, 90, 179, 197
DpnI GATC 3 cut(s) 39, 60, 218
DpnII GATC 3 cut(s) 37, 58, 216
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 69, 80
EarI CTCTTC 2 cut(s) 69, 80
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 92, 199
Eco53kI GAGCTC 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 92, 199
FaeI CATG 2 cut(s) 33, 178
FaiI YATR 3 cut(s) 31, 120, 176
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 29, 174
Fnu4HI GCNGC 3 cut(s) 100, 103, 165
FriOI GRGCYC 2 cut(s) 92, 199
Fsp4HI GCNGC 3 cut(s) 100, 103, 165
GlaI GCGC 1 cut(s) 106
GluI GCNGC 3 cut(s) 100, 103, 165
HaeIII GGCC 2 cut(s) 35, 179
HapII CCGG 3 cut(s) 68, 96, 243
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 33, 178
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 1 cut(s) 207
HpaII CCGG 3 cut(s) 68, 96, 243
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 131, 181
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 164
Hsp92II CATG 2 cut(s) 33, 178
HspAI GCGC 1 cut(s) 105
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 37, 58, 216
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 69, 81, 109, 199
Lsp1109I GCAGC 2 cut(s) 114, 176
MaeIII GTNAC 1 cut(s) 76
MalI GATC 3 cut(s) 39, 60, 218
MboI GATC 3 cut(s) 37, 58, 216
MboII GAAGA 4 cut(s) 56, 97, 146, 160
MhlI GDGCHC 2 cut(s) 92, 199
MlsI TGGCCA 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 1 cut(s) 72
Mox20I TGGCCA 1 cut(s) 179
MreI CGCCGGCG 1 cut(s) 95
MroNI GCCGGC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 3 cut(s) 68, 96, 243
MwoI GCNNNNNNNGC 2 cut(s) 96, 164
NaeI GCCGGC 1 cut(s) 97
NdeII GATC 3 cut(s) 37, 58, 216
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 33, 178
NmuCI GTSAC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 97
PkrI GCNGC 3 cut(s) 101, 104, 166
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 33
SacI GAGCTC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 80
SatI GCNGC 3 cut(s) 100, 103, 165
Sau3AI GATC 3 cut(s) 37, 58, 216
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 2 cut(s) 92, 199
SetI ASST 3 cut(s) 92, 132, 192
SgrAI CRCCGGYG 1 cut(s) 95
SsiI CCGC 2 cut(s) 93, 99
SstI GAGCTC 1 cut(s) 92
TaaI ACNGT 1 cut(s) 252
TauI GCSGC 1 cut(s) 102
TscAI CASTG 2 cut(s) 47, 218
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 102, 164
Tsp45I GTSAC 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 2 cut(s) 47, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.