Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Forward (+)

32062106 .. 32062354

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1181300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAACGGAGACAAAGCGAATTACGAGACCTCGTGGGCCGATCAGTGGGATTACAACAACAACTCCACCTACCCCGTCGAAGTCAAGGGCGACGGCGGAGTCGCCGCAAAATGCAAGCAGAAGGTCGGGGAAGGCCTGGTGAAGACCAAGGCGGTGGCTTCGACCGGCGCTAAGAAGGTCAAGGTAGGCGCCTCCGCTGGATTTCATTGGATCAAAGAGAAGTGCCAGAAGACTACCTCCAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008409 GO:0009892 GO:0009987 GO:0010605 GO:0010639 GO:0010833 GO:0015630 GO:0016043 GO:0016233 GO:0016604 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0022402 GO:0022616 GO:0031323 GO:0031324 GO:0031627 GO:0031848 GO:0031860 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042162 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0061730 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0098847 GO:0140097 GO:1901360 GO:1901363 GO:1903047 GO:1904356 GO:1904357 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04072 ko04080 ko04218 ko04724 map04072 map04080 map04218 map04724

Pfam Domains

Protein Families

DRMBL Lactamase_B_2

Protein Analysis

83

Amino Acids

8.88

Weight (kDa)

9.55

Isoelectric Point (pI)

1.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	4 cut(s)	96, 105, 152, 195
AclWI	GGATC	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	3, 20
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	36, 133
AspLEI	GCGC	2 cut(s)	170, 191
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	149, 236
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	3, 20
BfoI	RGCGCY	2 cut(s)	171, 192
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	149, 236
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	38, 135
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	3, 20
BsnI	GGCC	2 cut(s)	38, 135
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	40, 210
BspACI	CCGC	4 cut(s)	96, 105, 152, 195
BspANI	GGCC	2 cut(s)	38, 135
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	2 cut(s)	40, 210
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	137
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	171
BstH2I	RGCGCY	2 cut(s)	171, 192
BstHHI	GCGC	2 cut(s)	170, 191
BstKTI	GATC	2 cut(s)	43, 213
BstMAI	GTCTC	2 cut(s)	3, 20
BstMBI	GATC	2 cut(s)	40, 210
BstMCI	CGRYCG	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstV2I	GAAGAC	2 cut(s)	149, 236
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	38, 135
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	2 cut(s)	170, 191
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	36
CviJI	RGCY	3 cut(s)	38, 135, 158
CviKI_1	RGCY	3 cut(s)	38, 135, 158
DdeI	CTNAG	1 cut(s)	171
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	2 cut(s)	42, 212
DpnII	GATC	2 cut(s)	40, 210
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	147
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	2 cut(s)	169, 190
GluI	GCNGC	1 cut(s)	105
HaeII	RGCGCY	2 cut(s)	171, 192
HaeIII	GGCC	2 cut(s)	38, 135
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	170, 191
Hin1I	GRCGYC	1 cut(s)	189
Hin6I	GCGC	2 cut(s)	168, 189
HinP1I	GCGC	2 cut(s)	168, 189
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	151
Hpy99I	CGWCG	2 cut(s)	80, 95
HpyAV	CCTTC	3 cut(s)	115, 125, 169
HpyCH4V	TGCA	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	189
HspAI	GCGC	2 cut(s)	168, 189
KasI	GGCGCC	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	40, 210
LpnPI	CCDG	5 cut(s)	122, 149, 178, 183, 239
MalI	GATC	2 cut(s)	42, 212
MboI	GATC	2 cut(s)	40, 210
MboII	GAAGA	2 cut(s)	154, 241
MluCI	AATT	1 cut(s)	19
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	40, 202, 247
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	189
NdeII	GATC	2 cut(s)	40, 210
NlaIV	GGNNCC	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	107
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	36
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	40, 210
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	6 cut(s)	32, 71, 126, 180, 186, 239
SfoI	GGCGCC	1 cut(s)	190
Sse9I	AATT	1 cut(s)	19
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	4 cut(s)	96, 105, 152, 195
SspDI	GGCGCC	1 cut(s)	188
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	147
TaqI	TCGA	2 cut(s)	78, 161
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	17, 194
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.