Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Forward (+)

1809581 .. 1812583

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG027400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGATCACGGAGACAAGAAATCGAATAGTTACGAGACGACGTCATGGGCAGACCAGTGGGACTACACCAACAACTCGTCGTACCCTGTGGACGTCAAAGGTGGCGAGGGAACCGCCGCCAAGTGCAAGCAGAAGGTCGGCGAAGGCCTCGTGAAGACTAAAGCCGTCGCCTCCACCGGAGTCAAGAAGGTCAAGGATGGCGCCTCCTCCGGTTTCCAGTGGATCAAGGACAAATTGCCGGCGTTTCTCTCTCTCCTCGTCTCCACCTCGGTTTTGCTCGCTGTGATTTTCTCTCCTTGTAGATTGCCGGCTTGCTCTCTCTCAGGATCTGTTCCTGCTGCGGTTCCAGATCCAGGCCACCTCACCGTCAAATTCCAAGTTGGAAGATATGAAGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000228 GO:0000278 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008409 GO:0009892 GO:0009987 GO:0010605 GO:0010639 GO:0010833 GO:0015630 GO:0016043 GO:0016233 GO:0016604 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0022402 GO:0022616 GO:0031323 GO:0031324 GO:0031627 GO:0031848 GO:0031860 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042162 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0061730 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0098847 GO:0140097 GO:1901360 GO:1901363 GO:1903047 GO:1904356 GO:1904357 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04072 ko04080 ko04218 ko04724 map04072 map04080 map04218 map04724

Pfam Domains

Protein Families

DRMBL Lactamase_B_2

Protein Analysis

133

Amino Acids

14.11

Weight (kDa)

8.75

Isoelectric Point (pI)

17.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	44, 96
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	3 cut(s)	114, 117, 341
AclWI	GGATC	4 cut(s)	12, 230, 334, 344
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	3 cut(s)	41, 93, 201
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	352
Alw26I	GTCTC	3 cut(s)	6, 29, 265
AlwI	GGATC	4 cut(s)	12, 230, 334, 344
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	2 cut(s)	145, 355
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	191, 389
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	3 cut(s)	6, 29, 265
BfoI	RGCGCY	1 cut(s)	204
BisI	GCNGC	2 cut(s)	117, 339
BlsI	GCNGC	2 cut(s)	118, 340
Bme1390I	CCNGG	1 cut(s)	354
BmiI	GGNNCC	3 cut(s)	112, 202, 345
BmrFI	CCNGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	161
BsaHI	GRCGYC	3 cut(s)	41, 93, 201
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	2 cut(s)	176, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse118I	RCCGGY	2 cut(s)	238, 307
Bse1I	ACTGG	2 cut(s)	55, 217
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	55, 217
BseRI	GAGGAG	2 cut(s)	196, 245
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	2 cut(s)	147, 357
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	4 cut(s)	177, 210, 239, 308
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	6, 29, 265
BsmBI	CGTCTC	2 cut(s)	29, 265
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	2 cut(s)	147, 357
Bsp143I	GATC	4 cut(s)	4, 222, 326, 349
BspACI	CCGC	3 cut(s)	114, 117, 341
BspANI	GGCC	2 cut(s)	147, 357
BspCNI	CTCAG	1 cut(s)	335
BspLI	GGNNCC	3 cut(s)	112, 202, 345
BspPI	GGATC	4 cut(s)	12, 230, 334, 344
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	238, 307
BsrI	ACTGG	2 cut(s)	55, 217
BssAI	RCCGGY	2 cut(s)	238, 307
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	4 cut(s)	4, 222, 326, 349
BssNI	GRCGYC	3 cut(s)	41, 93, 201
BssSI	CACGAG	1 cut(s)	149
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	3 cut(s)	41, 93, 201
BstC8I	GCNNGC	5 cut(s)	128, 240, 279, 309, 313
BstDEI	CTNAG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	4 cut(s)	7, 225, 329, 352
BstMAI	GTCTC	3 cut(s)	6, 29, 265
BstMBI	GATC	4 cut(s)	4, 222, 326, 349
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	2 cut(s)	326, 349
BstYI	RGATCY	2 cut(s)	326, 349
BsuRI	GGCC	2 cut(s)	147, 357
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	62, 224
Cac8I	GCNNGC	5 cut(s)	128, 240, 279, 309, 313
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	238, 307
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	4 cut(s)	147, 164, 311, 357
CviKI_1	RGCY	4 cut(s)	147, 164, 311, 357
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	322
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	4 cut(s)	6, 224, 328, 351
DpnII	GATC	4 cut(s)	4, 222, 326, 349
Eco147I	AGGCCT	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	352
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
Esp3I	CGTCTC	2 cut(s)	29, 265
FaeI	CATG	1 cut(s)	48
FaiI	YATR	2 cut(s)	46, 390
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	117, 339
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	117, 339
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	2 cut(s)	117, 339
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	147, 357
HapII	CCGG	4 cut(s)	177, 210, 239, 308
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	3 cut(s)	41, 93, 201
Hin1II	CATG	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	180
HpaII	CCGG	4 cut(s)	177, 210, 239, 308
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	4 cut(s)	151, 184, 324, 347
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	3 cut(s)	43, 82, 170
HpyAV	CCTTC	3 cut(s)	127, 137, 181
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	41, 93
HpyCH4V	TGCA	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	322
HpySE526I	ACGT	2 cut(s)	41, 93
Hsp92I	GRCGYC	3 cut(s)	41, 93, 201
Hsp92II	CATG	1 cut(s)	48
HspAI	GCGC	1 cut(s)	201
KasI	GGCGCC	1 cut(s)	200
KroI	GCCGGC	2 cut(s)	238, 307
KroNI	GCCGGC	2 cut(s)	240, 309
Kzo9I	GATC	4 cut(s)	4, 222, 326, 349
Lsp1109I	GCAGC	1 cut(s)	325
MaeII	ACGT	2 cut(s)	41, 93
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	4 cut(s)	6, 224, 328, 351
MboI	GATC	4 cut(s)	4, 222, 326, 349
MboII	GAAGA	2 cut(s)	166, 396
MflI	RGATCY	2 cut(s)	326, 349
MluCI	AATT	2 cut(s)	233, 371
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	8 cut(s)	100, 158, 181, 214, 217, 266, 277, 371
MroNI	GCCGGC	2 cut(s)	238, 307
MspI	CCGG	4 cut(s)	177, 210, 239, 308
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
NaeI	GCCGGC	2 cut(s)	240, 309
NarI	GGCGCC	1 cut(s)	201
NdeII	GATC	4 cut(s)	4, 222, 326, 349
NgoMIV	GCCGGC	2 cut(s)	238, 307
NlaIII	CATG	1 cut(s)	48
NlaIV	GGNNCC	3 cut(s)	112, 202, 345
PceI	AGGCCT	1 cut(s)	147
PdiI	GCCGGC	2 cut(s)	240, 309
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	118, 340
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	3 cut(s)	112, 202, 345
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	326, 349
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SatI	GCNGC	2 cut(s)	117, 339
Sau3AI	GATC	4 cut(s)	4, 222, 326, 349
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	7 cut(s)	44, 96, 103, 138, 192, 269, 363
SfoI	GGCGCC	1 cut(s)	202
Sse9I	AATT	2 cut(s)	233, 371
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	3 cut(s)	114, 117, 341
SspDI	GGCGCC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	44, 96
TaqI	TCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	233, 371
TauI	GCSGC	1 cut(s)	119
TscAI	CASTG	2 cut(s)	62, 224
TseI	GCWGC	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	62, 224
Tth111I	GACNNNGTC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	371
ZraI	GACGTC	2 cut(s)	42, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.