Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000096.1

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Forward (+)

81676 .. 81924

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000096.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atggcagcaagtaattcatacgaaatgacctcgtgggcagatcaatgggacaacagccctgacccgtatccggctaactatgatcagtccaacacgagtacaaaggccaagtataccaaaaaggtagaggaagggtttgggaagacgaaatcagtggcgtcgagtgggatgaagaaggtgaagacaggagctcatgttggttttcactggatcaaggagaagtaccacaagactaccggaaagcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.21

Weight (kDa)

9.46

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	218
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	100, 224
AfiI	CCNNNNNNNGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	193
BauI	CACGAG	2 cut(s)	31, 94
BbsI	GAAGAC	2 cut(s)	149, 188
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	82
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BpiI	GAAGAC	2 cut(s)	149, 188
BsaHI	GRCGYC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	71, 237
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	40, 82, 210
BspANI	GGCC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	40, 82, 210
BssNAI	GTATAC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	158
BssSI	CACGAG	2 cut(s)	31, 94
Bst1107I	GTATAC	1 cut(s)	114
Bst2BI	CACGAG	2 cut(s)	31, 94
BstACI	GRCGYC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	3 cut(s)	43, 85, 213
BstMBI	GATC	3 cut(s)	40, 82, 210
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	149, 188
BstZ17I	GTATAC	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	159, 205
CseI	GACGC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	99, 223
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	4 cut(s)	57, 74, 107, 191
CviKI_1	RGCY	4 cut(s)	57, 74, 107, 191
CviQI	GTAC	2 cut(s)	99, 223
DpnI	GATC	3 cut(s)	42, 84, 212
DpnII	GATC	3 cut(s)	40, 82, 210
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	1 cut(s)	197
FaiI	YATR	4 cut(s)	19, 81, 114, 195
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	71, 237
HgaI	GACGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	197
HpaII	CCGG	2 cut(s)	71, 237
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	114
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	125, 169
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	40, 82, 210
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	4 cut(s)	72, 84, 171, 193
Lsp1109I	GCAGC	1 cut(s)	17
MalI	GATC	3 cut(s)	42, 84, 212
MboI	GATC	3 cut(s)	40, 82, 210
MboII	GAAGA	3 cut(s)	154, 184, 193
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	40, 121
MspI	CCGG	2 cut(s)	71, 237
NdeII	GATC	3 cut(s)	40, 82, 210
NlaIII	CATG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	193
RsaI	GTAC	2 cut(s)	100, 224
RsaNI	GTAC	2 cut(s)	99, 223
SacI	GAGCTC	1 cut(s)	193
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	40, 82, 210
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	4 cut(s)	32, 126, 180, 193
Sse9I	AATT	1 cut(s)	13
SstI	GAGCTC	1 cut(s)	193
TaqI	TCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	13
TatI	WGTACW	1 cut(s)	98
TscAI	CASTG	2 cut(s)	159, 212
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	6, 185
TspRI	CASTG	2 cut(s)	159, 212
XmiI	GTMKAC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.