Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004204

Physical Location & Seq

Genomic Coordinates Forward (+)

6568002 .. 6568705

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAACGGAACATCGTGGGCTGACCAGTGGGACAATAGCGGCGACTCTGCCAAAGGAGGCCGAATCGGCAGCGGCGCCGTCGTGAGAAGCAGCGGAAGTGGAGCAACGTCAAACACGACCAAGTACAAGGAGAAAATGGGACAAGGGTTAGACAAAACCAAAGCTGTAGCTTCTTCTGGTTTTAAGAAGCTCAAGACTGGTTCTGCTATTGGTTTTCGTTGGGTCAAGGACAAGTATCACAAAACCACACACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.16

Weight (kDa)

10.17

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19020
fragaria_vesca	FvH4_4g35190
malus_domestica	MD06G1181300.v1.1 MD14G1187200.v1.1 MD16G1084900.v1.1
prunus_persica	Prupe.1G261100_v2.0.a1 Prupe.1G261200_v2.0.a1 Prupe.5G179600_v2.0.a1
pyrus_communis	pycom06g16030 pycom13g07400 pycom14g15510
rosa_chinensis	RchiOBHm_Chr4g0444801 RchiOBHm_Chr7g0179751
rosa_laevigata	RLG00000005801
rosa_multiflora	Rmu_sc0000096.1_g000020 Rmu_sc0007130.1_g000002
rosa_roxburghii	Rroxscaffold_3G00273500 Rroxscaffold_5G00385290
rosa_rugosa	Rorug04G0355300 Rorug06G0427800
rosa_samantha	Rh3DG178000 Rh4BG428000 Rh4BG428100 Rh4CG442800 Rh4CG442900 Rh4DG423700 Rh4DG423800 Rh7AG027400 Rh7BG026500 Rh7CG028500 Rh7DG028100
rosa_wichuraiana	Rw4G035700 Rw7G002200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AciI	CCGC	3 cut(s)	39, 72, 93
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	125
AluBI	AGCT	3 cut(s)	164, 170, 190
AluI	AGCT	3 cut(s)	164, 170, 190
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	69, 90
AspLEI	GCGC	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	81, 102
BceAI	ACGGC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	4 cut(s)	40, 70, 73, 91
BlsI	GCNGC	4 cut(s)	41, 71, 74, 92
BmiI	GGNNCC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	25, 202
BseNI	ACTGG	2 cut(s)	25, 202
BseXI	GCAGC	2 cut(s)	81, 102
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	44, 153
BsmFI	GGGAC	2 cut(s)	44, 153
BsnI	GGCC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	39, 72, 93
BspANI	GGCC	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	25, 202
BssNI	GRCGYC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	81, 102
BsuRI	GGCC	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	5 cut(s)	20, 60, 164, 170, 190
CviKI_1	RGCY	5 cut(s)	20, 60, 164, 170, 190
CviQI	GTAC	1 cut(s)	124
DinI	GGCGCC	1 cut(s)	76
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
FaqI	GGGAC	2 cut(s)	44, 153
Fnu4HI	GCNGC	4 cut(s)	40, 70, 73, 91
Fsp4HI	GCNGC	4 cut(s)	40, 70, 73, 91
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	4 cut(s)	40, 70, 73, 91
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	44, 63
Hpy188III	TCNNGA	2 cut(s)	82, 193
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	75
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	3 cut(s)	38, 162, 183
Lsp1109I	GCAGC	2 cut(s)	81, 102
MaeII	ACGT	1 cut(s)	107
MboII	GAAGA	1 cut(s)	165
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	183
MspA1I	CMGCKG	2 cut(s)	72, 93
MwoI	GCNNNNNNNGC	1 cut(s)	66
NarI	GGCGCC	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	4 cut(s)	41, 71, 74, 92
PleI	GAGTC	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	4 cut(s)	40, 70, 73, 91
SchI	GAGTC	1 cut(s)	38
SetI	ASST	4 cut(s)	110, 166, 172, 192
SfcI	CTRYAG	1 cut(s)	165
SfoI	GGCGCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SsiI	CCGC	3 cut(s)	39, 72, 93
SspDI	GGCGCC	1 cut(s)	74
TaiI	ACGT	1 cut(s)	110
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	2 cut(s)	42, 75
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	2 cut(s)	69, 90
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.