MD14G1187200.v1.1

protection from non-homologous end joining at telomere

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0004204
Physical Location & Seq
Forward (+)
27949418 .. 27949669
252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1187200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGAACGGAGGCAAAGCGAATCACGAGGGCTCGTGGGCGGATCAGTGGGATTACAACAACTCCTCTTACCCCGTCGAACCCAAGGGCAGCAGCGACGGCGGGACCGCCGCAAAGTACAAGCAGAAGGTCGGGGAAGGCCTTGTGAAGACCAAGGCGGTGGCTTCGGTCGGCGCTAAGAAGGTCAAGGAAGGCGCCTCCGCTGGATTCCACTGGATCAAAGAAAAGTGCCAGAAGGTTACCCAGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000228 GO:0000278 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0008409 GO:0009892 GO:0009987 GO:0010605 GO:0010639 GO:0010833 GO:0015630 GO:0016043 GO:0016233 GO:0016604 GO:0016787 GO:0016788 GO:0016796 GO:0016895 GO:0019219 GO:0019222 GO:0022402 GO:0022616 GO:0031323 GO:0031324 GO:0031627 GO:0031848 GO:0031860 GO:0031974 GO:0031981 GO:0032200 GO:0032204 GO:0032205 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0035312 GO:0036297 GO:0042162 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043247 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045786 GO:0045930 GO:0045934 GO:0046483 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0051726 GO:0060249 GO:0060255 GO:0061730 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0098687 GO:0098847 GO:0140097 GO:1901360 GO:1901363 GO:1903047 GO:1904356 GO:1904357 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko04072 ko04080 ko04218 ko04724 map04072 map04080 map04218 map04724
Pfam Domains
Protein Families
DRMBL Lactamase_B_2

Protein Analysis

84

Amino Acids

8.93

Weight (kDa)

9.64

Isoelectric Point (pI)

9.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 6 cut(s) 38, 99, 105, 108, 155, 198
AclWI GGATC 2 cut(s) 48, 221
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 1 cut(s) 116
AlwI GGATC 2 cut(s) 48, 221
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 87, 90
AspLEI GCGC 2 cut(s) 173, 194
AspS9I GGNCC 1 cut(s) 102
AvaII GGWCC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 32
BauI CACGAG 2 cut(s) 23, 31
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 99, 102
BceAI ACGGC 1 cut(s) 112
BfoI RGCGCY 2 cut(s) 174, 195
BisI GCNGC 3 cut(s) 88, 91, 108
BlsI GCNGC 3 cut(s) 89, 92, 109
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 103, 193
BpiI GAAGAC 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 81, 150
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bse1I ACTGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 81, 150
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 2 cut(s) 99, 102
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 2 cut(s) 40, 213
BspACI CCGC 6 cut(s) 38, 99, 105, 108, 155, 198
BspANI GGCC 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 103, 193
BspPI GGATC 2 cut(s) 48, 221
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 81, 150
BssMI GATC 2 cut(s) 40, 213
BssNI GRCGYC 1 cut(s) 192
BssSI CACGAG 2 cut(s) 23, 31
BssT1I CCWWGG 2 cut(s) 81, 150
Bst2BI CACGAG 2 cut(s) 23, 31
BstACI GRCGYC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 235
BstH2I RGCGCY 2 cut(s) 174, 195
BstHHI GCGC 2 cut(s) 173, 194
BstKTI GATC 2 cut(s) 43, 216
BstMBI GATC 2 cut(s) 40, 213
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstPI GGTNACC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 99, 102
BstV2I GAAGAC 1 cut(s) 152
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 50, 208
CfoI GCGC 2 cut(s) 173, 194
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 115
CviJI RGCY 3 cut(s) 30, 138, 161
CviKI_1 RGCY 3 cut(s) 30, 138, 161
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 174
DinI GGCGCC 1 cut(s) 193
DpnI GATC 2 cut(s) 42, 215
DpnII GATC 2 cut(s) 40, 213
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 81, 150
Eco147I AGGCCT 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoT14I CCWWGG 2 cut(s) 81, 150
EcoT38I GRGCYC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 193
EheI GGCGCC 1 cut(s) 193
ErhI CCWWGG 2 cut(s) 81, 150
FaqI GGGAC 1 cut(s) 115
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 3 cut(s) 88, 91, 108
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 3 cut(s) 88, 91, 108
GlaI GCGC 2 cut(s) 172, 193
GluI GCNGC 3 cut(s) 88, 91, 108
HaeII RGCGCY 2 cut(s) 174, 195
HaeIII GGCC 1 cut(s) 138
HhaI GCGC 2 cut(s) 173, 194
Hin1I GRCGYC 1 cut(s) 192
Hin6I GCGC 2 cut(s) 171, 192
HinP1I GCGC 2 cut(s) 171, 192
HinfI GANTC 2 cut(s) 19, 204
Hpy188III TCNNGA 1 cut(s) 23
Hpy99I CGWCG 2 cut(s) 77, 98
HpyAV CCTTC 5 cut(s) 118, 128, 172, 182, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 192
HspAI GCGC 2 cut(s) 171, 192
KasI GGCGCC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 40, 213
LpnPI CCDG 3 cut(s) 186, 196, 242
Lsp1109I GCAGC 2 cut(s) 99, 102
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 42, 215
MboI GATC 2 cut(s) 40, 213
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 192
MnlI CCTC 3 cut(s) 19, 73, 205
MspA1I CMGCKG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 96
NarI GGCGCC 1 cut(s) 192
NdeII GATC 2 cut(s) 40, 213
NlaIV GGNNCC 2 cut(s) 103, 193
PceI AGGCCT 1 cut(s) 138
PfeI GAWTC 2 cut(s) 19, 204
PkrI GCNGC 3 cut(s) 89, 92, 109
PluTI GGCGCC 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 103, 193
PspPI GGNCC 1 cut(s) 102
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SatI GCNGC 3 cut(s) 88, 91, 108
Sau3AI GATC 2 cut(s) 40, 213
Sau96I GGNCC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 32
SetI ASST 3 cut(s) 129, 183, 237
SfoI GGCGCC 1 cut(s) 193
SinI GGWCC 1 cut(s) 102
SseBI AGGCCT 1 cut(s) 138
SsiI CCGC 6 cut(s) 38, 99, 105, 108, 155, 198
SspDI GGCGCC 1 cut(s) 191
StuI AGGCCT 1 cut(s) 138
StyI CCWWGG 2 cut(s) 81, 150
TaqI TCGA 1 cut(s) 75
TaqII GACCGA 1 cut(s) 154
TatI WGTACW 1 cut(s) 114
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 19, 204
TscAI CASTG 2 cut(s) 50, 215
TseI GCWGC 2 cut(s) 87, 90
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 50, 215
VpaK11BI GGWCC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.