Prupe.1G261200_v2.0.a1

protection from non-homologous end joining at telomere

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004204
Physical Location & Seq
Forward (+)
27012798 .. 27013269
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G261200.1

Sequence Viewer

Length: 258 bp
ATGGGATCAAATAGGCCGTACGACACCCCACGGGGAGATCAAAGGGATGGCAGCAACCAAGACCCTGCTTCTGCTTCTGAGACCAAGAAGAGCTCTGGTTCTGCTGATTGTGCCAAGGGTAATTATACTAGGAAAGTGGAAGAAGGCTTTGACAAAATTAAGGCTGCAGCATCAAATGGTATGAATAGGGTTAAGATTGCAGCTCATTTGGGTCTCCACTGGATCAAGAGCAAGAGCAAGACAAGCCGAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.21

Weight (kDa)

9.94

Isoelectric Point (pI)

16.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 13, 230
AfaI GTAC 1 cut(s) 20
AluBI AGCT 2 cut(s) 93, 203
AluI AGCT 2 cut(s) 93, 203
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 74, 218
AlwI GGATC 2 cut(s) 13, 230
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 4 cut(s) 51, 164, 167, 200
BanII GRGCYC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 4 cut(s) 63, 151, 179, 212
BccI CCATC 1 cut(s) 41
BcoDI GTCTC 2 cut(s) 74, 218
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 4 cut(s) 52, 165, 168, 201
BlsI GCNGC 4 cut(s) 53, 166, 169, 202
BmsI GCATC 1 cut(s) 179
BsaI GGTCTC 2 cut(s) 74, 218
BsaJI CCNNGG 2 cut(s) 29, 114
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 29, 114
BseGI GGATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 4 cut(s) 63, 151, 179, 212
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 95
BsiWI CGTACG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 74, 218
BsnI GGCC 1 cut(s) 16
Bso31I GGTCTC 2 cut(s) 74, 218
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 3 cut(s) 5, 37, 222
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 70
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 2 cut(s) 13, 230
BspQI GCTCTTC 1 cut(s) 83
BspTNI GGTCTC 2 cut(s) 74, 218
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 29, 114
BssMI GATC 3 cut(s) 5, 37, 222
BssT1I CCWWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 29
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 3 cut(s) 8, 40, 225
BstMAI GTCTC 2 cut(s) 74, 218
BstMBI GATC 3 cut(s) 5, 37, 222
BstMWI GCNNNNNNNGC 2 cut(s) 110, 243
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 63, 151, 179, 212
BsuRI GGCC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 217
Csp6I GTAC 1 cut(s) 19
CviJI RGCY 6 cut(s) 16, 93, 147, 164, 203, 246
CviKI_1 RGCY 6 cut(s) 16, 93, 147, 164, 203, 246
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 1 cut(s) 78
DpnI GATC 3 cut(s) 7, 39, 224
DpnII GATC 3 cut(s) 5, 37, 222
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 2 cut(s) 74, 218
Eco53kI GAGCTC 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 114
FaiI YATR 2 cut(s) 126, 182
Fnu4HI GCNGC 4 cut(s) 52, 165, 168, 201
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 4 cut(s) 52, 165, 168, 201
FspBI CTAG 1 cut(s) 129
GluI GCNGC 4 cut(s) 52, 165, 168, 201
HaeIII GGCC 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 167, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 243
HpyF3I CTNAG 1 cut(s) 78
Kzo9I GATC 3 cut(s) 5, 37, 222
LguI GCTCTTC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 78, 81, 205
Lsp1109I GCAGC 4 cut(s) 63, 151, 179, 212
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 129
MalI GATC 3 cut(s) 7, 39, 224
MboI GATC 3 cut(s) 5, 37, 222
MboII GAAGA 2 cut(s) 100, 152
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 121, 156
MseI TTAA 2 cut(s) 159, 192
MwoI GCNNNNNNNGC 2 cut(s) 110, 243
NdeII GATC 3 cut(s) 5, 37, 222
PciSI GCTCTTC 1 cut(s) 83
Pfl23II CGTACG 1 cut(s) 18
PkrI GCNGC 4 cut(s) 53, 166, 169, 202
Psp124BI GAGCTC 1 cut(s) 95
PspLI CGTACG 1 cut(s) 18
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacI GAGCTC 1 cut(s) 95
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 159, 192
SatI GCNGC 4 cut(s) 52, 165, 168, 201
Sau3AI GATC 3 cut(s) 5, 37, 222
SduI GDGCHC 1 cut(s) 95
SetI ASST 2 cut(s) 95, 205
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 165
Sse9I AATT 2 cut(s) 121, 156
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 1 cut(s) 95
StyI CCWWGG 1 cut(s) 114
TasI AATT 2 cut(s) 121, 156
Tru1I TTAA 2 cut(s) 159, 192
Tru9I TTAA 2 cut(s) 159, 192
TscAI CASTG 1 cut(s) 224
TseI GCWGC 4 cut(s) 51, 164, 167, 200
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 224
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.