AT1G71930
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019560
Physical Location & Seq
Forward (+)
27074702 .. 27077991
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71930.2

Sequence Viewer

Length: 975 bp
ATGGATAATATAATGCAATCGTCAATGCCACCGGGATTCCGATTTCATCCGACAGAGGAAGAGCTTGTGGGTTATTACCTAGATAGGAAGATCAATTCAATGAAGAGTGCTTTAGATGTCATTGTAGAGATTGATCTCTACAAAATGGAGCCATGGGATATACAAGCGAGGTGTAAACTAGGGTATGAAGAGCAAAACGAGTGGTACTTCTTTAGTCATAAGGACAGGAAGTACCCTACCGGGACTAGGACCAACCGAGCCACTGCGGCTGGGTTCTGGAAAGCCACGGGTAGAGACAAGGCGGTACTATCAAAAAACAGTGTCATCGGAATGCGGAAGACACTTGTCTACTACAAGGGTCGAGCTCCTAATGGAAGAAAGTCCGATTGGATCATGCACGAATACCGTCTCCAAAACTCCGAGCTTGCCCCGGTTCAGGAGGAAGGCTGGGTGGTGTGTCGAGCATTTAGGAAGCCAATTCCAAACCAGAGGCCATTAGGGTACGAGCCATGGCAGAACCAGCTCTACCACGTCGAAAGTAGTAACAACTACTCATCTTCAGTGACAATGAACACGAGTCATCATATCGGTGCATCTTCATCAAGTCATAACCTTAATCAAATGCTCATGAGCAATAACCACTACAATCCTAATAATACATCCTCATCGATGCATCAATATGGCAACATTGAGCTCCCGCAGTTGGACAGCCCGAGCTTGTCGCCTAGTTTAGGGACGAATAAAGATCAGAACGAGAGTTTCGAGCAAGAAGAAGAGAAGAGCTTTAACTGTGTGGATTGGAGAACACTAGATACCTTGCTTGAGACACAAGTCATACATCCGCATAACCCTAATATTCTTATGTTCGAAACGCAGTCGTATAATCCGGCGCCAAGCTTCCCTTCCATGCATCAAAGCTATAATGAGGTCGAAGCTAATATTCATCATTCTCTTGGATGCTTCCCTGACTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071704 GO:0080090 GO:0090059 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

324

Amino Acids

37.43

Weight (kDa)

6.05

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 137 2.3e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71930 AT1G71930
malus_domestica MD05G1042100.v1.1 MD10G1048500.v1.1 MD10G1048600.v1.1
prunus_persica Prupe.8G058100_v2.0.a1
pyrus_communis pycom05g03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 348
AciI CCGC 5 cut(s) 266, 302, 334, 698, 842
AclWI GGATC 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 890
AfaI GTAC 4 cut(s) 206, 233, 306, 503
AfiI CCNNNNNNNGG 4 cut(s) 246, 436, 703, 731
AgsI TTSAA 1 cut(s) 99
AjiI CACGTC 1 cut(s) 532
AjuI GAANNNNNNNTTGG 4 cut(s) 370, 402, 886, 918
Alw21I GWGCWC 2 cut(s) 367, 696
Alw26I GTCTC 3 cut(s) 288, 413, 818
AlwI GGATC 1 cut(s) 398
Ama87I CYCGRG 1 cut(s) 712
AoxI GGCC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 3 cut(s) 33, 241, 431
AsuII TTCGAA 1 cut(s) 867
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 889
BanII GRGCYC 2 cut(s) 367, 696
BauI CACGAG 1 cut(s) 574
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 2 cut(s) 367, 696
BcnI CCSGG 3 cut(s) 33, 241, 431
BcoDI GTCTC 3 cut(s) 288, 413, 818
BfaI CTAG 5 cut(s) 80, 179, 246, 726, 809
BfoI RGCGCY 1 cut(s) 893
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 3 cut(s) 33, 241, 431
Bme18I GGWCC 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 150, 891
BmrFI CCNGG 3 cut(s) 33, 241, 431
BmsI GCATC 5 cut(s) 602, 660, 682, 919, 947
BoxI GACNNNNGTC 2 cut(s) 344, 830
BpiI GAAGAC 1 cut(s) 344
Bpu14I TTCGAA 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 3 cut(s) 33, 241, 431
Bsa29I ATCGAT 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 890
BsaJI CCNNGG 4 cut(s) 152, 285, 429, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 246, 436, 703, 731
BseCI ATCGAT 1 cut(s) 668
BseDI CCNNGG 4 cut(s) 152, 285, 429, 509
BseGI GGATG 4 cut(s) 46, 659, 838, 962
BseLI CCNNNNNNNGG 4 cut(s) 246, 436, 703, 731
BseYI CCCAGC 2 cut(s) 269, 447
BshFI GGCC 1 cut(s) 493
BshNI GGYRCC 1 cut(s) 889
BshVI ATCGAT 1 cut(s) 668
BsiHKAI GWGCWC 2 cut(s) 367, 696
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 4 cut(s) 32, 240, 431, 887
BslFI GGGAC 2 cut(s) 256, 748
BslI CCNNNNNNNGG 4 cut(s) 246, 436, 703, 731
BsmAI GTCTC 3 cut(s) 288, 413, 818
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 256, 748
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 712
Bsp119I TTCGAA 1 cut(s) 867
Bsp1286I GDGCHC 2 cut(s) 367, 696
Bsp143I GATC 4 cut(s) 90, 133, 390, 745
Bsp19I CCATGG 2 cut(s) 152, 509
BspACI CCGC 5 cut(s) 266, 302, 334, 698, 842
BspANI GGCC 1 cut(s) 493
BspDI ATCGAT 1 cut(s) 668
BspHI TCATGA 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 150, 891
BspPI GGATC 1 cut(s) 398
BspQI GCTCTTC 3 cut(s) 54, 183, 773
BspT104I TTCGAA 1 cut(s) 867
BspT107I GGYRCC 1 cut(s) 889
BssECI CCNNGG 4 cut(s) 152, 285, 429, 509
BssMI GATC 4 cut(s) 90, 133, 390, 745
BssNI GRCGYC 1 cut(s) 890
BssSI CACGAG 1 cut(s) 574
BssT1I CCWWGG 2 cut(s) 152, 509
Bst2BI CACGAG 1 cut(s) 574
Bst4CI ACNGT 3 cut(s) 320, 407, 791
Bst6I CTCTTC 5 cut(s) 54, 98, 183, 768, 773
BstACI GRCGYC 1 cut(s) 890
BstBI TTCGAA 1 cut(s) 867
BstC8I GCNNGC 1 cut(s) 426
BstDSI CCRYGG 3 cut(s) 152, 285, 509
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 4 cut(s) 46, 659, 838, 962
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 4 cut(s) 93, 136, 393, 748
BstMAI GTCTC 3 cut(s) 288, 413, 818
BstMBI GATC 4 cut(s) 90, 133, 390, 745
BstMWI GCNNNNNNNGC 2 cut(s) 266, 520
BstPAI GACNNNNGTC 2 cut(s) 344, 830
BstSCI CCNGG 3 cut(s) 31, 239, 429
BstV2I GAAGAC 1 cut(s) 344
Bsu15I ATCGAT 1 cut(s) 668
BsuRI GGCC 1 cut(s) 493
BsuTUI ATCGAT 1 cut(s) 668
BtgI CCRYGG 3 cut(s) 152, 285, 509
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 4 cut(s) 46, 659, 838, 962
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 261, 325, 567
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 627
CfoI GCGC 1 cut(s) 892
Cfr13I GGNCC 1 cut(s) 249
ClaI ATCGAT 1 cut(s) 668
Csp6I GTAC 4 cut(s) 205, 232, 305, 502
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviAII CATG 5 cut(s) 153, 394, 510, 628, 907
CviQI GTAC 4 cut(s) 205, 232, 305, 502
DinI GGCGCC 1 cut(s) 891
DpnI GATC 4 cut(s) 92, 135, 392, 747
DpnII GATC 4 cut(s) 90, 133, 390, 745
Eam1104I CTCTTC 5 cut(s) 54, 98, 183, 768, 773
EarI CTCTTC 5 cut(s) 54, 98, 183, 768, 773
Ecl136II GAGCTC 2 cut(s) 365, 694
Eco130I CCWWGG 2 cut(s) 152, 509
Eco24I GRGCYC 2 cut(s) 367, 696
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 2 cut(s) 365, 694
Eco57I CTGAAG 1 cut(s) 543
Eco88I CYCGRG 1 cut(s) 712
EcoICRI GAGCTC 2 cut(s) 365, 694
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoT14I CCWWGG 2 cut(s) 152, 509
EcoT22I ATGCAT 2 cut(s) 675, 912
EcoT38I GRGCYC 2 cut(s) 367, 696
EgeI GGCGCC 1 cut(s) 891
EheI GGCGCC 1 cut(s) 891
ErhI CCWWGG 2 cut(s) 152, 509
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 5 cut(s) 156, 397, 513, 631, 910
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FaqI GGGAC 2 cut(s) 256, 748
FatI CATG 5 cut(s) 152, 393, 509, 627, 906
FauI CCCGC 1 cut(s) 705
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 4 cut(s) 33, 646, 825, 969
FriOI GRGCYC 2 cut(s) 367, 696
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 5 cut(s) 80, 179, 246, 726, 809
GlaI GCGC 1 cut(s) 891
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 2 cut(s) 273, 451
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 1 cut(s) 493
HapII CCGG 4 cut(s) 32, 240, 431, 887
HhaI GCGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 890
Hin1II CATG 5 cut(s) 156, 397, 513, 631, 910
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HindIII AAGCTT 1 cut(s) 895
HinfI GANTC 3 cut(s) 36, 577, 968
HpaII CCGG 4 cut(s) 32, 240, 431, 887
Hpy166II GTNNAC 2 cut(s) 176, 349
Hpy188I TCNGA 6 cut(s) 41, 51, 329, 385, 421, 750
Hpy188III TCNNGA 3 cut(s) 277, 437, 628
Hpy8I GTNNAC 2 cut(s) 176, 349
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 437, 912
HpyCH4III ACNGT 3 cut(s) 320, 407, 791
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 5 cut(s) 16, 397, 593, 673, 910
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 520
HpySE526I ACGT 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 890
Hsp92II CATG 5 cut(s) 156, 397, 513, 631, 910
HspAI GCGC 1 cut(s) 890
KasI GGCGCC 1 cut(s) 889
Kzo9I GATC 4 cut(s) 90, 133, 390, 745
LguI GCTCTTC 3 cut(s) 54, 183, 773
LmnI GCTCC 3 cut(s) 148, 370, 699
LweI GCATC 5 cut(s) 602, 660, 682, 919, 947
MaeI CTAG 5 cut(s) 80, 179, 246, 726, 809
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 542, 562
MalI GATC 4 cut(s) 92, 135, 392, 747
MboI GATC 4 cut(s) 90, 133, 390, 745
MhlI GDGCHC 2 cut(s) 367, 696
MluCI AATT 2 cut(s) 94, 477
Mly113I GGCGCC 1 cut(s) 890
MlyI GAGTC 2 cut(s) 586, 962
MmeI TCCRAC 2 cut(s) 74, 684
MnlI CCTC 6 cut(s) 49, 162, 433, 483, 673, 919
Mph1103I ATGCAT 2 cut(s) 675, 912
MseI TTAA 2 cut(s) 615, 786
MslI CAYNNNNRTG 3 cut(s) 329, 588, 678
MspI CCGG 4 cut(s) 32, 240, 431, 887
MspR9I CCNGG 3 cut(s) 33, 241, 431
Mva1269I GAATGC 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 266, 520
NarI GGCGCC 1 cut(s) 890
NciI CCSGG 3 cut(s) 33, 241, 431
NcoI CCATGG 2 cut(s) 152, 509
NdeII GATC 4 cut(s) 90, 133, 390, 745
NlaIII CATG 5 cut(s) 156, 397, 513, 631, 910
NlaIV GGNNCC 2 cut(s) 150, 891
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 2 cut(s) 675, 912
NspV TTCGAA 1 cut(s) 867
PagI TCATGA 1 cut(s) 627
PciSI GCTCTTC 3 cut(s) 54, 183, 773
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 2 cut(s) 585, 962
PluTI GGCGCC 1 cut(s) 893
PpsI GAGTC 2 cut(s) 585, 962
PshAI GACNNNNGTC 2 cut(s) 344, 830
Psp124BI GAGCTC 2 cut(s) 367, 696
PspFI CCCAGC 2 cut(s) 269, 447
PspN4I GGNNCC 2 cut(s) 150, 891
PspPI GGNCC 1 cut(s) 249
PsrI GAACNNNNNNTAC 4 cut(s) 509, 541, 796, 828
RsaI GTAC 4 cut(s) 206, 233, 306, 503
RsaNI GTAC 4 cut(s) 205, 232, 305, 502
RseI CAYNNNNRTG 3 cut(s) 329, 588, 678
SacI GAGCTC 2 cut(s) 367, 696
SapI GCTCTTC 3 cut(s) 54, 183, 773
SaqAI TTAA 2 cut(s) 615, 786
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 4 cut(s) 90, 133, 390, 745
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 586, 962
ScrFI CCNGG 3 cut(s) 33, 241, 431
SduI GDGCHC 2 cut(s) 367, 696
SfaNI GCATC 5 cut(s) 602, 660, 682, 919, 947
SfoI GGCGCC 1 cut(s) 891
SfuI TTCGAA 1 cut(s) 867
SinI GGWCC 1 cut(s) 249
SmiMI CAYNNNNRTG 3 cut(s) 329, 588, 678
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 2 cut(s) 94, 477
SsiI CCGC 5 cut(s) 266, 302, 334, 698, 842
SspDI GGCGCC 1 cut(s) 889
SspI AATATT 2 cut(s) 856, 940
SspMI CTAG 5 cut(s) 80, 179, 246, 726, 809
SstI GAGCTC 2 cut(s) 367, 696
StyD4I CCNGG 3 cut(s) 31, 239, 429
StyI CCWWGG 2 cut(s) 152, 509
TaaI ACNGT 3 cut(s) 320, 407, 791
TaiI ACGT 1 cut(s) 534
TaqI TCGA 7 cut(s) 361, 460, 534, 668, 762, 867, 930
TasI AATT 2 cut(s) 94, 477
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 2 cut(s) 615, 786
Tru9I TTAA 2 cut(s) 615, 786
TscAI CASTG 3 cut(s) 268, 325, 567
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 6 cut(s) 35, 116, 201, 584, 588, 932
TspRI CASTG 3 cut(s) 268, 325, 567
VpaK11BI GGWCC 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 729
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 5 cut(s) 80, 179, 246, 726, 809
Zsp2I ATGCAT 2 cut(s) 675, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.