MD10G1048600.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0019560
Physical Location & Seq
Reverse (-)
6416344 .. 6417138
795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1048600.v1.1.491

Sequence Viewer

Length: 462 bp
ATGGAGATGGAATCTTGTGTTCCACCAGGCTTCAGATTTCACCCGACAGAAGAAGAACTTGTGGGTTACTACCTGAAAAGAAAGATCAACTCACTACATATTGATCTAGATGTCATCGTTGACATTGACCTATACAAAATCGAACCATGGGACATACAAGCGAGATGCAGGTTAGGTTACAGTGAACAGAACGAGTGGTACTTCTTCAGTCACAAAGACAAGAAGTACCCGACCGGAACGCGAACAAATAGAGCCACAGTTGCTGGATTCTGGAAGGCAACAGGAAGAGACAAGGCAGTGCTTTCAAAGGACAACATTATAGGAATGAGGAAGACCCTGGTGTTCTACAAGGGACGGGCACCTAACGGCAACAAAACCGACTGGATCATGCATGAATATCGACTCCAAACTTCTGAACATGCACCCCCTCAGGCAAGTTCTTCAACATCGTCTATCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071704 GO:0080090 GO:0090059 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

154

Amino Acids

17.8

Weight (kDa)

8.82

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 135 5.7e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71930 AT1G71930
malus_domestica MD05G1042100.v1.1 MD10G1048500.v1.1 MD10G1048600.v1.1
prunus_persica Prupe.8G058100_v2.0.a1
pyrus_communis pycom05g03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 358
AccII CGCG 1 cut(s) 241
AclWI GGATC 1 cut(s) 392
AcuI CTGAAG 2 cut(s) 16, 190
AfaI GTAC 2 cut(s) 200, 227
AgsI TTSAA 2 cut(s) 306, 444
AjnI CCWGG 2 cut(s) 25, 336
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 382
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 2 cut(s) 27, 338
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 27, 338
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 2 cut(s) 27, 338
BmsI GCATC 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 146, 336
BsaWI WCCGGW 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 386
Bse21I CCTNAGG 1 cut(s) 429
BseBI CCWGG 2 cut(s) 27, 338
BseDI CCNNGG 2 cut(s) 146, 336
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 164, 366
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 164, 366
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 84, 103, 384
Bsp19I CCATGG 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 146, 336
BssMI GATC 3 cut(s) 84, 103, 384
BssT1I CCWWGG 1 cut(s) 146
Bst2UI CCWGG 2 cut(s) 27, 338
Bst4CI ACNGT 2 cut(s) 182, 259
Bst6I CTCTTC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 146
BstFNI CGCG 1 cut(s) 241
BstKTI GATC 3 cut(s) 87, 106, 387
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 3 cut(s) 84, 103, 384
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 2 cut(s) 27, 338
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 25, 336
BstSLI GKGCMC 1 cut(s) 361
BstUI CGCG 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 338
Bsu36I CCTNAGG 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 2 cut(s) 187, 303
BveI ACCTGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 263
Csp6I GTAC 2 cut(s) 199, 226
CviAII CATG 4 cut(s) 147, 388, 392, 419
CviJI RGCY 2 cut(s) 30, 254
CviKI_1 RGCY 2 cut(s) 30, 254
CviQI GTAC 2 cut(s) 199, 226
DdeI CTNAG 1 cut(s) 429
DpnI GATC 3 cut(s) 86, 105, 386
DpnII GATC 3 cut(s) 84, 103, 384
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 16, 190
Eco81I CCTNAGG 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 25, 336
EcoT14I CCWWGG 1 cut(s) 146
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 4 cut(s) 150, 391, 395, 422
FaiI YATR 8 cut(s) 99, 133, 148, 155, 320, 389, 393, 420
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 2 cut(s) 164, 366
FatI CATG 4 cut(s) 146, 387, 391, 418
FspBI CTAG 1 cut(s) 107
HapII CCGG 1 cut(s) 234
Hin1II CATG 4 cut(s) 150, 391, 395, 422
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 3 cut(s) 11, 267, 402
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 121, 185
Hpy188I TCNGA 2 cut(s) 35, 415
Hpy188III TCNNGA 2 cut(s) 107, 271
Hpy8I GTNNAC 2 cut(s) 121, 185
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 182, 259
HpyCH4V TGCA 3 cut(s) 168, 391, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 4 cut(s) 150, 391, 395, 422
Kzo9I GATC 3 cut(s) 84, 103, 384
LweI GCATC 1 cut(s) 155
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 65, 176, 209
MalI GATC 3 cut(s) 86, 105, 386
MboI GATC 3 cut(s) 84, 103, 384
MboII GAAGA 6 cut(s) 62, 65, 196, 297, 343, 432
MhlI GDGCHC 1 cut(s) 361
MlyI GAGTC 1 cut(s) 396
MnlI CCTC 2 cut(s) 321, 438
Mph1103I ATGCAT 1 cut(s) 393
MseI TTAA 1 cut(s) 460
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 2 cut(s) 27, 338
MvaI CCWGG 2 cut(s) 27, 338
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 260
NcoI CCATGG 1 cut(s) 146
NdeII GATC 3 cut(s) 84, 103, 384
NlaIII CATG 4 cut(s) 150, 391, 395, 422
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 1 cut(s) 422
PfeI GAWTC 2 cut(s) 11, 267
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
Psp6I CCWGG 2 cut(s) 25, 336
PspGI CCWGG 2 cut(s) 25, 336
PspN4I GGNNCC 1 cut(s) 360
PsrI GAACNNNNNNTAC 2 cut(s) 182, 214
PstNI CAGNNNCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 200, 227
RsaNI GTAC 2 cut(s) 199, 226
SaqAI TTAA 1 cut(s) 460
Sau3AI GATC 3 cut(s) 84, 103, 384
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 2 cut(s) 27, 338
SduI GDGCHC 1 cut(s) 361
SetI ASST 5 cut(s) 75, 132, 173, 178, 364
SfaNI GCATC 1 cut(s) 155
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 25, 336
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 2 cut(s) 182, 259
TaqI TCGA 2 cut(s) 141, 400
TfiI GAWTC 2 cut(s) 11, 267
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 2 cut(s) 187, 303
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 2 cut(s) 187, 303
XbaI TCTAGA 1 cut(s) 106
XceI RCATGY 1 cut(s) 422
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.