Prupe.8G058100_v2.0.a1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0019560
Physical Location & Seq
Forward (+)
7293635 .. 7297369
3735 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G058100.1

Sequence Viewer

Length: 921 bp
ATGGATCACATGGAGTCTTGTGTTCCACCAGGTTTTAGATTTCACCCGACAGAAGAAGAACTTGTGGGTTACTACCTGAAAAGAAAGATCAACTCACTACAAATTGATCTAGACGTCATTATTGACATTGACCTGTACAAAATTGAACCATGGGACATACAAGCAAGATGCAAGCTAGGTTACAGTGAACAGAATGAGTGGTACTTCTTCAGTCACAAAGACAAGAAGTACCCGACCGGAACTCGGACAAATAGAGCCACGGCTGCCGGATTCTGGAAGGCGACAGGAAGGGACAAGGCAGTGCTTTCAAAGAACAACATTATAGGAATGAGGAAAACCCTTGTGTTCTACAGAGGACGAGCACCTAACGGGAACAAAACTGACTGGATCATGCATGAATATCGCCTCCAAACATCTGAACATGCACCCCCTCAGGAAGAAGGATGGGTTGTATGCCGGGCATTCAAGAAGCCAAGCCCTAGCCACAGGCAAGGTTTTGAAGCATTGAAGCATGCTTACTATATCAGAGAACATAACAGCCATGCTTCATCTTCAAATTTTGGGAGTGAGATGCATATGGTGAACCTGAGCCAAGGTTTTCAATATCAATCCTTTGGTTTGGATCAGCAAGATCATCTCATTTCAAACCATATTTTCATGGGCAACCAACTCACAGAACTTCCTCAACTAGAGAGCCCAAGCATTTCAACAAGCTTGGCCAACAAACAAGGTGTGCATGAGCAGCAAAACAATAATATAACCACTGAACACTATGACGACCAAAGGTGCAACATGAATAGCAGTGATCAGCACATAGATTGGAGAAATTTGGACAGCTTACTTGAAGTGCCATTGATACCCCAAAATTATGAGCAAGAAGCTCAAAACCACCATCTTCTTGGATGCTTTCCTGACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071704 GO:0080090 GO:0090059 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

307

Amino Acids

35.58

Weight (kDa)

6.17

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71930 AT1G71930
malus_domestica MD05G1042100.v1.1 MD10G1048500.v1.1 MD10G1048600.v1.1
prunus_persica Prupe.8G058100_v2.0.a1
pyrus_communis pycom05g03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 117
AclWI GGATC 3 cut(s) 12, 395, 630
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 2 cut(s) 556, 826
AcuI CTGAAG 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 3 cut(s) 137, 203, 230
AfiI CCNNNNNNNGG 2 cut(s) 243, 273
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 175, 714, 837, 881
AluI AGCT 4 cut(s) 175, 714, 837, 881
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 3 cut(s) 12, 395, 630
AoxI GGCC 1 cut(s) 717
ApeKI GCWGC 2 cut(s) 263, 742
ApoI RAATTY 2 cut(s) 556, 826
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 35, 592
AxyI CCTNAGG 1 cut(s) 432
BalI TGGCCA 1 cut(s) 719
BanII GRGCYC 1 cut(s) 698
BarI GAAGNNNNNNTAC 2 cut(s) 500, 532
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 250, 754
BccI CCATC 2 cut(s) 438, 900
BceAI ACGGC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 30
BclI TGATCA 1 cut(s) 805
BcnI CCSGG 1 cut(s) 458
BfaI CTAG 4 cut(s) 110, 176, 480, 689
BfmI CTRYAG 1 cut(s) 349
BisI GCNGC 2 cut(s) 264, 743
BlsI GCNGC 2 cut(s) 265, 744
Bme1390I CCNGG 2 cut(s) 30, 458
BmrFI CCNGG 2 cut(s) 30, 458
BmsI GCATC 3 cut(s) 158, 561, 893
Bpu10I CCTNAGC 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 149, 258, 592
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 273
Bse1I ACTGG 1 cut(s) 389
Bse21I CCTNAGG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 149, 258, 592
BseGI GGATG 2 cut(s) 449, 908
BseLI CCNNNNNNNGG 2 cut(s) 243, 273
BseMII CTCAG 2 cut(s) 446, 578
BseNI ACTGG 1 cut(s) 389
BseXI GCAGC 2 cut(s) 250, 754
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 719
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 3 cut(s) 237, 267, 457
BslFI GGGAC 2 cut(s) 167, 305
BslI CCNNNNNNNGG 2 cut(s) 243, 273
BsmFI GGGAC 2 cut(s) 167, 305
BsmI GAATGC 1 cut(s) 461
BsnI GGCC 1 cut(s) 719
Bsp1286I GDGCHC 2 cut(s) 364, 698
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
Bsp19I CCATGG 1 cut(s) 149
BspANI GGCC 1 cut(s) 719
BspCNI CTCAG 2 cut(s) 445, 579
BspPI GGATC 3 cut(s) 12, 395, 630
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 3 cut(s) 149, 258, 592
BssMI GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 149, 592
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 114
BstAUI TGTACA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 173, 513
BstDEI CTNAG 2 cut(s) 432, 587
BstDSI CCRYGG 2 cut(s) 149, 258
BstF5I GGATG 2 cut(s) 449, 908
BstKTI GATC 7 cut(s) 7, 90, 109, 390, 625, 634, 808
BstMBI GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 263, 742
BstNI CCWGG 1 cut(s) 30
BstNSI RCATGY 2 cut(s) 425, 515
BstSCI CCNGG 2 cut(s) 28, 456
BstSFI CTRYAG 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 250, 754
BstXI CCANNNNNNTGG 1 cut(s) 899
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 1 cut(s) 719
BtgI CCRYGG 2 cut(s) 149, 258
BtsCI GGATG 2 cut(s) 449, 908
BtsI GCAGTG 2 cut(s) 306, 808
BtsIMutI CAGTG 4 cut(s) 190, 306, 762, 808
Cac8I GCNNGC 2 cut(s) 173, 513
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 3 cut(s) 136, 202, 229
CviQI GTAC 3 cut(s) 136, 202, 229
DdeI CTNAG 2 cut(s) 432, 587
DpnI GATC 7 cut(s) 6, 89, 108, 389, 624, 633, 807
DpnII GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
EaeI YGGCCR 1 cut(s) 717
Eco130I CCWWGG 2 cut(s) 149, 592
Eco24I GRGCYC 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 193
Eco81I CCTNAGG 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 2 cut(s) 149, 592
EcoT22I ATGCAT 2 cut(s) 396, 576
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 2 cut(s) 149, 592
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 2 cut(s) 167, 305
FauNDI CATATG 1 cut(s) 576
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 2 cut(s) 264, 743
FokI GGATG 2 cut(s) 456, 915
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 264, 743
FspBI CTAG 4 cut(s) 110, 176, 480, 689
GluI GCNGC 2 cut(s) 264, 743
HaeIII GGCC 1 cut(s) 719
HapII CCGG 3 cut(s) 237, 267, 457
Hin1I GRCGYC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 712
HinfI GANTC 2 cut(s) 14, 270
HpaII CCGG 3 cut(s) 237, 267, 457
HphI GGTGA 2 cut(s) 35, 592
Hpy166II GTNNAC 2 cut(s) 188, 583
Hpy188I TCNGA 3 cut(s) 246, 418, 527
Hpy188III TCNNGA 5 cut(s) 110, 274, 434, 466, 911
Hpy8I GTNNAC 2 cut(s) 188, 583
HpyAV CCTTC 3 cut(s) 271, 282, 434
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 6 cut(s) 171, 394, 425, 574, 736, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 742
HpyF3I CTNAG 2 cut(s) 432, 587
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 114
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
Lsp1109I GCAGC 2 cut(s) 250, 754
LweI GCATC 3 cut(s) 158, 561, 893
MabI ACCWGGT 1 cut(s) 28
MaeI CTAG 4 cut(s) 110, 176, 480, 689
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 68, 179, 212
MalI GATC 7 cut(s) 6, 89, 108, 389, 624, 633, 807
MboI GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
MboII GAAGA 6 cut(s) 65, 68, 199, 449, 543, 887
MhlI GDGCHC 2 cut(s) 364, 698
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 5 cut(s) 102, 141, 556, 826, 865
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 5 cut(s) 324, 347, 416, 441, 693
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 2 cut(s) 396, 576
MscI TGGCCA 1 cut(s) 719
Msp20I TGGCCA 1 cut(s) 719
MspI CCGG 3 cut(s) 237, 267, 457
MspR9I CCNGG 2 cut(s) 30, 458
Mva1269I GAATGC 1 cut(s) 461
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 263, 742
NciI CCSGG 1 cut(s) 458
NcoI CCATGG 1 cut(s) 149
NdeI CATATG 1 cut(s) 576
NdeII GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
NmuCI GTSAC 1 cut(s) 212
NsiI ATGCAT 2 cut(s) 396, 576
NspI RCATGY 2 cut(s) 425, 515
PaeI GCATGC 1 cut(s) 515
PctI GAATGC 1 cut(s) 461
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 2 cut(s) 265, 744
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
RsaI GTAC 3 cut(s) 137, 203, 230
RsaNI GTAC 3 cut(s) 136, 202, 229
SatI GCNGC 2 cut(s) 264, 743
Sau3AI GATC 7 cut(s) 4, 87, 106, 387, 622, 631, 805
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 30, 458
SduI GDGCHC 2 cut(s) 364, 698
SexAI ACCWGGT 1 cut(s) 28
SfaNI GCATC 3 cut(s) 158, 561, 893
SfcI CTRYAG 1 cut(s) 349
SphI GCATGC 1 cut(s) 515
Sse9I AATT 5 cut(s) 102, 141, 556, 826, 865
SspMI CTAG 4 cut(s) 110, 176, 480, 689
StyD4I CCNGG 2 cut(s) 28, 456
StyI CCWWGG 2 cut(s) 149, 592
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 117
TasI AATT 5 cut(s) 102, 141, 556, 826, 865
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 270
TscAI CASTG 4 cut(s) 190, 306, 769, 808
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 263, 742
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 4 cut(s) 411, 537, 646, 809
TspRI CASTG 4 cut(s) 190, 306, 769, 808
XapI RAATTY 2 cut(s) 556, 826
XbaI TCTAGA 1 cut(s) 109
XceI RCATGY 2 cut(s) 425, 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XspI CTAG 4 cut(s) 110, 176, 480, 689
ZraI GACGTC 1 cut(s) 115
Zsp2I ATGCAT 2 cut(s) 396, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.