MD10G1048500.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0019560
Physical Location & Seq
Reverse (-)
6415602 .. 6416111
510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1048500.v1.1.491

Sequence Viewer

Length: 510 bp
ATGCAGGAAGAAGGATGGGTTGTATGCCGGGCATTCAAGAAGCCAAGTCCCAGTCACAGGCAAGGTTTTGAAGCATGGAAGCATGCCTATGTCAGAGATCATCCTTCATCTTCAAACTTCTCGAGCGAAATTCCTATGCTGATCAACCCCAATCAAGGTTTTCATCAATCTTTTGGTTCAGAGGAAGATCATTTCGTTTCGAACAACATTTTCTTGGGTAACCAACTCATGGAACTTCCTCAACTAGAAAGCCCAACCATTTCAACAAGCTTTGTCACCAAAGAACATGTATTGCGTAGCAACAATATAAGCACTGACGACTATGAGGCGGAAAGGAGCAACAATAATAGCAGCAATCAACACATAGATTGGAGAAATTTGGACAACTTACTCGAAGTGCAATTGACTGATCGGGCATCCTTTTCTCATCCAAGTTTGTCGTCGGCACCTCAAAATTATGAGCAAGAAACTCAGAACAATCATCTTCTTGGATGCTTCCGAGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071704 GO:0080090 GO:0090059 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

170

Amino Acids

19.42

Weight (kDa)

5.25

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019560)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71930 AT1G71930
malus_domestica MD05G1042100.v1.1 MD10G1048500.v1.1 MD10G1048600.v1.1
prunus_persica Prupe.8G058100_v2.0.a1
pyrus_communis pycom05g03470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 445
AccB7I CCANNNNNTGG 1 cut(s) 229
AciI CCGC 1 cut(s) 329
AcsI RAATTY 2 cut(s) 129, 376
AfiI CCNNNNNNNGG 3 cut(s) 57, 155, 229
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 4 cut(s) 37, 71, 114, 264
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 351
ApoI RAATTY 2 cut(s) 129, 376
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 268
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 121
BanI GGYRCC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 9
BclI TGATCA 1 cut(s) 141
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 425, 482
BmuI ACTGGG 1 cut(s) 45
Bpu14I TTCGAA 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 155, 229
Bse1I ACTGG 1 cut(s) 51
BseGI GGATG 5 cut(s) 20, 100, 416, 427, 497
BseLI CCNNNNNNNGG 3 cut(s) 57, 155, 229
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 3 cut(s) 57, 155, 229
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 200
Bsp143I GATC 4 cut(s) 97, 141, 187, 409
BspACI CCGC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 447
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 445
BsrI ACTGG 1 cut(s) 51
BssMI GATC 4 cut(s) 97, 141, 187, 409
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 5 cut(s) 20, 100, 416, 427, 497
BstKTI GATC 4 cut(s) 100, 144, 190, 412
BstMAI GTCTC 1 cut(s) 495
BstMBI GATC 4 cut(s) 97, 141, 187, 409
BstNSI RCATGY 2 cut(s) 86, 290
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 363
BtsCI GGATG 5 cut(s) 20, 100, 416, 427, 497
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 84
CviAII CATG 4 cut(s) 75, 83, 229, 287
CviJI RGCY 3 cut(s) 43, 252, 270
CviKI_1 RGCY 3 cut(s) 43, 252, 270
DdeI CTNAG 1 cut(s) 471
DpnI GATC 4 cut(s) 99, 143, 189, 411
DpnII GATC 4 cut(s) 97, 141, 187, 409
EciI GGCGGA 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
FaeI CATG 4 cut(s) 78, 86, 232, 290
FaqI GGGAC 1 cut(s) 33
FatI CATG 4 cut(s) 74, 82, 228, 286
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 5 cut(s) 27, 87, 403, 414, 504
Fsp4HI GCNGC 1 cut(s) 352
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 352
HapII CCGG 1 cut(s) 28
Hin1II CATG 4 cut(s) 78, 86, 232, 290
HindIII AAGCTT 1 cut(s) 268
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 95, 181, 474, 500
Hpy188III TCNNGA 2 cut(s) 37, 121
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 2 cut(s) 5, 114
HpyCH4V TGCA 2 cut(s) 4, 400
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 4 cut(s) 78, 86, 232, 290
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 4 cut(s) 97, 141, 187, 409
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 3 cut(s) 41, 43, 64
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 2 cut(s) 425, 482
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 53, 218, 274
MalI GATC 4 cut(s) 99, 143, 189, 411
MboI GATC 4 cut(s) 97, 141, 187, 409
MboII GAAGA 4 cut(s) 20, 102, 197, 476
MfeI CAATTG 1 cut(s) 401
MluCI AATT 4 cut(s) 129, 376, 401, 454
MnlI CCTC 4 cut(s) 175, 249, 319, 459
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 29
NdeII GATC 4 cut(s) 97, 141, 187, 409
NlaIII CATG 4 cut(s) 78, 86, 232, 290
NlaIV GGNNCC 1 cut(s) 447
NmuCI GTSAC 2 cut(s) 53, 274
NspI RCATGY 2 cut(s) 86, 290
NspV TTCGAA 1 cut(s) 200
PaeI GCATGC 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 121
PciI ACATGT 1 cut(s) 286
PctI GAATGC 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 353
PscI ACATGT 1 cut(s) 286
PspEI GGTNACC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 87
SatI GCNGC 1 cut(s) 352
Sau3AI GATC 4 cut(s) 97, 141, 187, 409
ScrFI CCNGG 1 cut(s) 29
SetI ASST 4 cut(s) 67, 160, 272, 451
SfaNI GCATC 2 cut(s) 425, 482
Sfr274I CTCGAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
SphI GCATGC 1 cut(s) 86
Sse9I AATT 4 cut(s) 129, 376, 401, 454
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 122, 200, 393
TasI AATT 4 cut(s) 129, 376, 401, 454
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 53, 274
TseI GCWGC 1 cut(s) 351
Tsp45I GTSAC 2 cut(s) 53, 274
TspDTI ATGAA 2 cut(s) 96, 152
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 229
XapI RAATTY 2 cut(s) 129, 376
XceI RCATGY 2 cut(s) 86, 290
XhoI CTCGAG 1 cut(s) 121
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.