AT1G72840

DNA-binding transcription factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016584
Physical Location & Seq
Reverse (-)
27409196 .. 27413851
4656 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72840.4

Sequence Viewer

Length: 3129 bp
ATGGCTTCCTCGTCATCATCTTCTGCAACTCGTCTCAGGCACTACGATGTCTTCCTCAGTTTTCGAGGGGTAGATACCCGCCAAACCATCGTCAGCCATTTGTATGTGGCTCTACGTAATAATGGAGTTCTTACTTTTAAAGATGATCGGAAGCTCGAGATTGGCGACACCATTGCCGATGGTCTAGTCAAAGCTATACAAACTTCGTGGTTTGCGGTGGTTATTCTCTCTGAAAACTACGCTACTTCGACGTGGTGCTTGGAGGAGCTCCGGTTGATAATGCAGCTTCACAGTGAGGAGCAGATCAAAGTGCTTCCTATCTTCTACGGCGTAAAACCCTCTGACGTGAGATACCAGGAAGGAAGCTTCGCGACTGCCTTTCAAAGGTACGAAGCAGATCCGGAGATGGAGGAGAAGGTTTCTAAATGGAGAAGAGCTCTCACCCAAGTCGCTAATCTATCAGGCAAGCATTCCAGAAATTGCGTGGATGAGGCAGATATGATAGCCGAGGTAGTTGGAGGCATCTCAAGTCGACTGCCAAGGATGAAGTCGACAGATTTGATTAATTTAGTTGGAATGGAAGCTCATATGATGAAGATGACTCTCCTTCTGAATATTGGTTGTGAAGACGAGGTTCATATGATAGGGATCTGGGGAATGGGAGGCATAGGCAAATCCACCATTGCCAAGTGTCTCTATGATCGATTTTCACGTCAATTTCCAGCTCACTGTTTTTTGGAAAACGTGTCTAAAGGCTATGATATTAAGCATCTACAAAAGGAATTGCTTTCCCATATCCTCTATGATGAAGATGTCGAGTTATGGAGCATGGAAGCTGGATCCCAAGAGATAAAGGAGAGACTCGGGCATCAAAAAGTTTTTGTCGTGCTTGATAATGTCGATAAAGTGGAGCAGTTACATGGCCTGGCAAAGGACCCAAGCTGGTTCGGTCCAGGGAGCCGTATCATCATAACCACACGAGACAAAGGTTTGCTCAATTCCTGCGGAGTAAACAATATATATGAGGTTAAGTGCTTGGACGATAAGGATGCGCTTCAGGTTTTTAAAAAGTTAGCTTTTGGGGGAAGACCTCCTTCTGATGGTTTTGAGCAACTCTTTATCAGAGCTTCTCGGCTTGCTCACGGCCTTCCTTCTGCCCTTGTAGCTTTTGCCTCCCATCTCAGTGCTATTGTGGCCATAGATGAATGGGAAGATGAGCTAGCTCTACTTGAAACATTCCCTCAAAAAAATGTCCAAGAGATTTTGAGAGCTAGCTATGACGGTTTAGATCAATACGACAAGACTGTTTTCCTTCATGTGGCATGTTTCTTTAATGGTGGCCATCTCCGATATATCAGAGCATTTCTTAAAAATTGTGATGCAAGGATAAATCACTTAGCAGCAAAGTGTCTCGTCAACATATCAATTGATGGATGTATAAGCATGCATATCTTGCTAGTACAAACTGGAAGAGAAATTGTGCGTCAAGAATCCGACTGGAGGCCTTCCAAACAAAGGTTTTTATGGGATCCTACAGAGATCCATTATGTACTGGACAGTAACACAGGTACTCGAAGAGTTGAAGGCCTGTCACTGCACTTGTGTGAAATGGCTGACACTTTATTATTGAGGAATAGTGTTTTTGGCCCTATGCATAATCTCACATTTCTCAAGTTCTTCCAGCACTTGGGTGGTAATGTGTCGAACCTGCAGCTAATTTCAGATGATTATGTTCTTTCTCGTAATCTGAAGTTACTACACTGGGATGCCTATCCATTGACTATATTGCCACCTATCTTTCGACCACACACCATTATTGAACTCAGTCTGCGATACAGCAAACTCAACAGCCTCTGGGATGGAACCAAGCTGCTTCCAAACCTACGGATACTAGATGTAACAGGATCGAGGAATCTCAGAGAACTTCCAGAACTTTCGACCGCAGTAAATCTTGAAGAGTTGATATTGGAAAGCTGTACGAGCCTGGTGCAAATCCCAGAGTCTATTAATAGATTATATCTGAGGAAACTAAATATGATGTACTGTGATGGTCTTGAGGGAGTGATACTCGTCAATGACCTTCAAGAAGCCAGCCTCAGCCGCTGGGGCCTCAAACGGATTATACTGAACCTTCCTCATTCAGGGGCGACACTGAGTTCTCTGACAGATCTAGCTATCCAGGGGAAAATATTCATTAAGTTGTCGGGTCTCTCGGGTACGGGAGACCATCTGTCTTTTAGTTCTGTGCAGAAGACCGCTCATCAATCAGTAACACATCTACTTAACTCTGGTTTCTTTGGTTTGAAATCACTCGACATCAAGCGGTTCAGTTACAGGTTGGATCCTGTTAATTTCAGCTGTCTTAGCTTTGCAGACTTTCCATGTCTGACCGAGCTAAAGCTGATAAACTTAAACATTGAAGACATCCCTGAAGACATATGTCAGTTGCAGCTCCTAGAGACACTGGACCTCGGTGGAAATGATTTCGTGTATCTACCCACATCCATGGGACAACTTGCCATGTTAAAGTACCTCAGCCTCAGTAACTGTCGCAGACTTAAGGCACTGCCACAACTTTCTCAGGTGGAGAGACTCGTACTTTCTGGCTGTGTGAAGCTCGGATCATTGATGGGAATTCTTGGTGCAGGCAGATACAATTTGCTTGATTTTTGCGTTGAAAAATGCAAGAGTCTTGGATCATTGATGGGAATTCTTAGTGTGGAAAAATCAGCTCCAGGCAGAAACGAGTTGCTTGAGCTTAGCCTTGAAAACTGTAAGAGTCTTGTGTCATTATCAGAGGAGCTTAGTCATTTCACCAAGTTAACATATCTAGATCTCAGCAGCCTCGAGTTTAGGAGAATCCCAACAAGCATCAGAGAGTTATCCTTTATGAGAACTCTCTACCTCAACAACTGCAACAAAATCTTTTCACTGACAGATCTTCCAGAGAGCCTCAAGTATCTCTATGCACATGGGTGCGAATCTCTGGAGCATGTTAACTTCTCTTCGAATCATTCTTTCAACCACTTGGACTTTAGCCATTGCATCAGTCTAGAATGTATTAGCGATCTGGTTCGTGACTTTATGAACGAGGAATATTCTCAAGAGGTAAGGCTCTCTTCTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 map04612 map05152
Pfam Domains
Protein Families
CBFB_NFYA

Protein Analysis

1042

Amino Acids

117.67

Weight (kDa)

6.1

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 43 - 194 2.7e-19 NB-ARC domain
WHD_ROQ1 PF23282 266 - 332 1.7e-11 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 630 - 700 1.3e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1716
AccB7I CCANNNNNTGG 1 cut(s) 1687
AccBSI CCGCTC 1 cut(s) 2258
AccI GTMKAC 2 cut(s) 532, 551
AccII CGCG 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 400
AciI CCGC 7 cut(s) 79, 215, 1005, 1941, 2101, 2256, 2323
AcoI YGGCCR 2 cut(s) 1194, 1339
AcsI RAATTY 2 cut(s) 2634, 2709
AcuI CTGAAG 3 cut(s) 1040, 1769, 2451
AfaI GTAC 9 cut(s) 389, 1461, 1551, 1570, 1978, 2042, 2218, 2531, 2598
AfiI CCNNNNNNNGG 8 cut(s) 384, 931, 1100, 1318, 1500, 1515, 1687, 2141
AflII CTTAAG 1 cut(s) 2558
AflIII ACRYGT 1 cut(s) 744
AhdI GACNNNNNGTC 1 cut(s) 2230
AjiI CACGTC 3 cut(s) 252, 346, 713
AjnI CCWGG 6 cut(s) 354, 924, 952, 1983, 2178, 2734
AleI CACNNNNGTG 3 cut(s) 1602, 1689, 2974
Alw21I GWGCWC 2 cut(s) 270, 439
Alw26I GTCTC 9 cut(s) 38, 698, 853, 975, 1415, 2213, 2217, 2453, 2584
AlwNI CAGNNNCTG 3 cut(s) 1854, 2103, 2547
Ama87I CYCGRG 4 cut(s) 155, 863, 2212, 2846
Aor13HI TCCGGA 1 cut(s) 400
AoxI GGCC 8 cut(s) 922, 1144, 1194, 1339, 1502, 1585, 1645, 2107
ApeKI GCWGC 6 cut(s) 283, 1400, 1711, 1870, 2449, 2841
ApoI RAATTY 2 cut(s) 2634, 2709
AseI ATTAAT 2 cut(s) 564, 2007
Asp700I GAANNNNTTC 1 cut(s) 2189
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 5 cut(s) 934, 950, 1646, 2107, 2467
AsuHPI GGTGA 2 cut(s) 433, 2806
AsuII TTCGAA 1 cut(s) 3008
AsuNHI GCTAGC 2 cut(s) 1219, 1271
AvaI CYCGRG 4 cut(s) 155, 863, 2212, 2846
AvaII GGWCC 3 cut(s) 934, 950, 2467
BalI TGGCCA 2 cut(s) 1196, 1341
BamHI GGATCC 3 cut(s) 839, 1528, 2341
BanII GRGCYC 2 cut(s) 270, 439
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 6 cut(s) 43, 633, 1093, 2258, 2427, 2439
Bbv12I GWGCWC 2 cut(s) 270, 439
BbvCI CCTCAGC 2 cut(s) 2096, 2534
BbvI GCAGC 6 cut(s) 295, 1412, 1723, 1857, 2461, 2853
BceAI ACGGC 3 cut(s) 343, 945, 1159
BcgI CGANNNNNNTGC 6 cut(s) 155, 189, 1031, 1065, 1969, 2003
BciT130I CCWGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
BciVI GTATCC 1 cut(s) 1881
BcoDI GTCTC 9 cut(s) 38, 698, 853, 975, 1415, 2213, 2217, 2453, 2584
BfaI CTAG 9 cut(s) 185, 1220, 1272, 1457, 1892, 2171, 2456, 2831, 3053
BfmI CTRYAG 2 cut(s) 1533, 1709
BfrI CTTAAG 1 cut(s) 2558
BfuAI ACCTGC 1 cut(s) 1716
BfuI GTATCC 1 cut(s) 1881
BglI GCCNNNNNGGC 1 cut(s) 2106
BglII AGATCT 3 cut(s) 2167, 2833, 2938
BisI GCNGC 7 cut(s) 284, 1401, 1712, 1871, 2101, 2450, 2842
BlpI GCTNAGC 1 cut(s) 2759
BlsI GCNGC 7 cut(s) 285, 1402, 1713, 1872, 2102, 2451, 2843
Bme1390I CCNGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
Bme18I GGWCC 3 cut(s) 934, 950, 2467
BmeRI GACNNNNNGTC 1 cut(s) 2230
BmeT110I CYCGRG 4 cut(s) 155, 863, 2212, 2846
BmgBI CACGTC 3 cut(s) 252, 346, 713
BmgT120I GGNCC 5 cut(s) 934, 950, 1646, 2107, 2467
BmiI GGNNCC 7 cut(s) 841, 936, 959, 1530, 1864, 2108, 2343
BmrFI CCNGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
BmrI ACTGGG 1 cut(s) 1771
BmsI GCATC 8 cut(s) 531, 778, 877, 1039, 1369, 1756, 2880, 3054
BmtI GCTAGC 2 cut(s) 1223, 1275
BmuI ACTGGG 1 cut(s) 1771
BoxI GACNNNNGTC 1 cut(s) 2439
BpiI GAAGAC 6 cut(s) 43, 633, 1093, 2258, 2427, 2439
BplI GAGNNNNNCTC 4 cut(s) 421, 453, 2052, 2084
BpmI CTGGAG 3 cut(s) 1519, 2718, 3008
Bpu10I CCTNAGC 2 cut(s) 2096, 2534
Bpu1102I GCTNAGC 1 cut(s) 2759
Bpu14I TTCGAA 1 cut(s) 3008
BpuEI CTTGAG 6 cut(s) 511, 1655, 2075, 2774, 2939, 3087
Bsa29I ATCGAT 1 cut(s) 703
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 2 cut(s) 647, 1770
BsaI GGTCTC 2 cut(s) 2213, 2217
BsaJI CCNNGG 6 cut(s) 507, 539, 953, 2179, 2470, 2505
BsaWI WCCGGW 2 cut(s) 270, 400
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 8 cut(s) 384, 931, 1100, 1318, 1500, 1515, 1687, 2141
Bse1I ACTGG 5 cut(s) 1471, 1502, 1557, 1766, 2469
Bse3DI GCAATG 3 cut(s) 171, 681, 3040
Bse8I GATNNNNATC 2 cut(s) 647, 1770
BseAI TCCGGA 1 cut(s) 400
BseBI CCWGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
BseCI ATCGAT 1 cut(s) 703
BseDI CCNNGG 6 cut(s) 507, 539, 953, 2179, 2470, 2505
BseGI GGATG 8 cut(s) 493, 549, 1054, 1439, 1771, 1864, 2424, 2501
BseJI GATNNNNATC 2 cut(s) 647, 1770
BseLI CCNNNNNNNGG 8 cut(s) 384, 931, 1100, 1318, 1500, 1515, 1687, 2141
BseMI GCAATG 3 cut(s) 171, 681, 3040
BseNI ACTGG 5 cut(s) 1471, 1502, 1557, 1766, 2469
BseRI GAGGAG 4 cut(s) 278, 311, 425, 2813
BseXI GCAGC 6 cut(s) 295, 1412, 1723, 1857, 2461, 2853
BseYI CCCAGC 1 cut(s) 2103
BsgI GTGCAG 3 cut(s) 1580, 2267, 2664
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 1941
BshFI GGCC 8 cut(s) 924, 1146, 1196, 1341, 1504, 1587, 1647, 2109
BshVI ATCGAT 1 cut(s) 703
BsiEI CGRYCG 1 cut(s) 1941
BsiHKAI GWGCWC 2 cut(s) 270, 439
BsiHKCI CYCGRG 4 cut(s) 155, 863, 2212, 2846
BsiSI CCGG 2 cut(s) 271, 401
BslFI GGGAC 1 cut(s) 2523
BslI CCNNNNNNNGG 8 cut(s) 384, 931, 1100, 1318, 1500, 1515, 1687, 2141
BsmAI GTCTC 9 cut(s) 38, 698, 853, 975, 1415, 2213, 2217, 2453, 2584
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 2523
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 8 cut(s) 924, 1146, 1196, 1341, 1504, 1587, 1647, 2109
Bso31I GGTCTC 2 cut(s) 2213, 2217
BsoBI CYCGRG 4 cut(s) 155, 863, 2212, 2846
Bsp119I TTCGAA 1 cut(s) 3008
Bsp1286I GDGCHC 2 cut(s) 270, 439
Bsp13I TCCGGA 1 cut(s) 400
Bsp1720I GCTNAGC 1 cut(s) 2759
Bsp19I CCATGG 1 cut(s) 2505
Bsp68I TCGCGA 1 cut(s) 371
BspACI CCGC 7 cut(s) 79, 215, 1005, 1941, 2101, 2256, 2323
BspANI GGCC 8 cut(s) 924, 1146, 1196, 1341, 1504, 1587, 1647, 2109
BspDI ATCGAT 1 cut(s) 703
BspEI TCCGGA 1 cut(s) 400
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 7 cut(s) 841, 936, 959, 1530, 1864, 2108, 2343
BspMAI CTGCAG 1 cut(s) 1713
BspMI ACCTGC 1 cut(s) 1716
BspOI GCTAGC 2 cut(s) 1223, 1275
BspQI GCTCTTC 1 cut(s) 427
BspT104I TTCGAA 1 cut(s) 3008
BspTI CTTAAG 1 cut(s) 2558
BspTNI GGTCTC 2 cut(s) 2213, 2217
BsrBI CCGCTC 1 cut(s) 2258
BsrDI GCAATG 3 cut(s) 171, 681, 3040
BsrI ACTGG 5 cut(s) 1471, 1502, 1557, 1766, 2469
BssECI CCNNGG 6 cut(s) 507, 539, 953, 2179, 2470, 2505
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 2 cut(s) 539, 2505
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
Bst4CI ACNGT 8 cut(s) 293, 731, 1283, 1306, 1559, 2045, 2549, 2774
Bst6I CTCTTC 6 cut(s) 427, 1465, 1570, 1950, 3010, 3124
BstAFI CTTAAG 1 cut(s) 2558
BstAPI GCANNNNNTGC 1 cut(s) 1453
BstBAI YACGTR 1 cut(s) 116
BstBI TTCGAA 1 cut(s) 3008
BstC8I GCNNGC 7 cut(s) 467, 1137, 1221, 1273, 1445, 2092, 2647
BstDSI CCRYGG 1 cut(s) 2505
BstENI CCTNNNNNAGG 3 cut(s) 382, 929, 2139
BstF5I GGATG 8 cut(s) 493, 549, 1054, 1439, 1771, 1864, 2424, 2501
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 1054
BstMAI GTCTC 9 cut(s) 38, 698, 853, 975, 1415, 2213, 2217, 2453, 2584
BstMCI CGRYCG 1 cut(s) 1941
BstMWI GCNNNNNNNGC 7 cut(s) 1163, 1193, 1453, 1980, 2100, 2106, 2364
BstNI CCWGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
BstNSI RCATGY 3 cut(s) 1326, 1447, 2996
BstPAI GACNNNNGTC 1 cut(s) 2439
BstSCI CCNGG 6 cut(s) 354, 924, 952, 1983, 2178, 2734
BstSFI CTRYAG 2 cut(s) 1533, 1709
BstSNI TACGTA 1 cut(s) 116
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 6 cut(s) 295, 1412, 1723, 1857, 2461, 2853
BstV2I GAAGAC 6 cut(s) 43, 633, 1093, 2258, 2427, 2439
BstX2I RGATCY 9 cut(s) 397, 648, 839, 1528, 1539, 2167, 2341, 2833, 2938
BstXI CCANNNNNNTGG 1 cut(s) 2506
BstYI RGATCY 9 cut(s) 397, 648, 839, 1528, 1539, 2167, 2341, 2833, 2938
Bsu15I ATCGAT 1 cut(s) 703
BsuI GTATCC 1 cut(s) 1881
BsuRI GGCC 8 cut(s) 924, 1146, 1196, 1341, 1504, 1587, 1647, 2109
BsuTUI ATCGAT 1 cut(s) 703
BtgI CCRYGG 1 cut(s) 2505
BtrI CACGTC 3 cut(s) 252, 346, 713
BtsCI GGATG 8 cut(s) 493, 549, 1054, 1439, 1771, 1864, 2424, 2501
BtsI GCAGTG 2 cut(s) 1592, 2564
BtsIMutI CAGTG 9 cut(s) 298, 727, 1189, 1592, 1759, 2150, 2462, 2564, 2930
BtuMI TCGCGA 1 cut(s) 371
BveI ACCTGC 1 cut(s) 1716
Cac8I GCNNGC 7 cut(s) 467, 1137, 1221, 1273, 1445, 2092, 2647
CaiI CAGNNNCTG 3 cut(s) 1854, 2103, 2547
CfoI GCGC 1 cut(s) 1054
Cfr13I GGNCC 5 cut(s) 934, 950, 1646, 2107, 2467
ClaI ATCGAT 1 cut(s) 703
CseI GACGC 1 cut(s) 1472
Csp6I GTAC 9 cut(s) 388, 1460, 1550, 1569, 1977, 2041, 2217, 2530, 2597
CspCI CAANNNNNGTGG 2 cut(s) 188, 223
CviQI GTAC 9 cut(s) 388, 1460, 1550, 1569, 1977, 2041, 2217, 2530, 2597
DraI TTTAAA 2 cut(s) 139, 1066
DriI GACNNNNNGTC 1 cut(s) 2230
EaeI YGGCCR 2 cut(s) 1194, 1339
Eam1104I CTCTTC 6 cut(s) 427, 1465, 1570, 1950, 3010, 3124
Eam1105I GACNNNNNGTC 1 cut(s) 2230
EarI CTCTTC 6 cut(s) 427, 1465, 1570, 1950, 3010, 3124
Ecl136II GAGCTC 2 cut(s) 268, 437
Eco105I TACGTA 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 539, 2505
Eco147I AGGCCT 2 cut(s) 1504, 1587
Eco24I GRGCYC 2 cut(s) 270, 439
Eco31I GGTCTC 2 cut(s) 2213, 2217
Eco47I GGWCC 3 cut(s) 934, 950, 2467
Eco53kI GAGCTC 2 cut(s) 268, 437
Eco57I CTGAAG 3 cut(s) 1040, 1769, 2451
Eco88I CYCGRG 4 cut(s) 155, 863, 2212, 2846
EcoICRI GAGCTC 2 cut(s) 268, 437
EcoNI CCTNNNNNAGG 3 cut(s) 382, 929, 2139
EcoO109I RGGNCCY 2 cut(s) 934, 2107
EcoRI GAATTC 2 cut(s) 2634, 2709
EcoRII CCWGG 6 cut(s) 354, 924, 952, 1983, 2178, 2734
EcoT14I CCWWGG 2 cut(s) 539, 2505
EcoT22I ATGCAT 2 cut(s) 1449, 1656
EcoT38I GRGCYC 2 cut(s) 270, 439
ErhI CCWWGG 2 cut(s) 539, 2505
Esp3I CGTCTC 1 cut(s) 38
FalI AAGNNNNNCTT 3 cut(s) 1078, 1110, 3103
FaqI GGGAC 1 cut(s) 2523
FauI CCCGC 1 cut(s) 86
FauNDI CATATG 3 cut(s) 588, 639, 2438
FblI GTMKAC 2 cut(s) 532, 551
Fnu4HI GCNGC 7 cut(s) 284, 1401, 1712, 1871, 2101, 2450, 2842
FokI GGATG 8 cut(s) 500, 556, 1061, 1446, 1778, 1871, 2411, 2488
FriOI GRGCYC 2 cut(s) 270, 439
Fsp4HI GCNGC 7 cut(s) 284, 1401, 1712, 1871, 2101, 2450, 2842
FspBI CTAG 9 cut(s) 185, 1220, 1272, 1457, 1892, 2171, 2456, 2831, 3053
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 7 cut(s) 284, 1401, 1712, 1871, 2101, 2450, 2842
GsaI CCCAGC 1 cut(s) 2107
GsuI CTGGAG 3 cut(s) 1519, 2718, 3008
HaeIII GGCC 8 cut(s) 924, 1146, 1196, 1341, 1504, 1587, 1647, 2109
HapII CCGG 2 cut(s) 271, 401
HgaI GACGC 1 cut(s) 1472
HhaI GCGC 1 cut(s) 1054
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HincII GTYRAC 5 cut(s) 533, 552, 1417, 2823, 2998
HindII GTYRAC 5 cut(s) 533, 552, 1417, 2823, 2998
HindIII AAGCTT 1 cut(s) 364
HpaI GTTAAC 2 cut(s) 2823, 2998
HpaII CCGG 2 cut(s) 271, 401
HphI GGTGA 2 cut(s) 433, 2806
Hpy166II GTNNAC 6 cut(s) 533, 552, 1012, 1417, 2823, 2998
Hpy8I GTNNAC 6 cut(s) 533, 552, 1012, 1417, 2823, 2998
Hpy99I CGWCG 1 cut(s) 253
HpyCH4III ACNGT 8 cut(s) 293, 731, 1283, 1306, 1559, 2045, 2549, 2774
HpyCH4IV ACGT 5 cut(s) 115, 251, 345, 712, 744
HpyF10VI GCNNNNNNNGC 7 cut(s) 1163, 1193, 1453, 1980, 2100, 2106, 2364
HpySE526I ACGT 5 cut(s) 115, 251, 345, 712, 744
HspAI GCGC 1 cut(s) 1052
Kpn2I TCCGGA 1 cut(s) 400
KspAI GTTAAC 2 cut(s) 2823, 2998
LguI GCTCTTC 1 cut(s) 427
Lsp1109I GCAGC 6 cut(s) 295, 1412, 1723, 1857, 2461, 2853
LweI GCATC 8 cut(s) 531, 778, 877, 1039, 1369, 1756, 2880, 3054
MaeI CTAG 9 cut(s) 185, 1220, 1272, 1457, 1892, 2171, 2456, 2831, 3053
MaeII ACGT 5 cut(s) 115, 251, 345, 712, 744
MaeIII GTNAC 9 cut(s) 915, 1559, 1590, 1752, 1897, 2269, 2330, 2543, 3077
MbiI CCGCTC 1 cut(s) 2258
MfeI CAATTG 1 cut(s) 1425
MflI RGATCY 9 cut(s) 397, 648, 839, 1528, 1539, 2167, 2341, 2833, 2938
MhlI GDGCHC 2 cut(s) 270, 439
MlsI TGGCCA 2 cut(s) 1196, 1341
MluNI TGGCCA 2 cut(s) 1196, 1341
MlyI GAGTC 6 cut(s) 595, 855, 2009, 2586, 2698, 2788
MmeI TCCRAC 4 cut(s) 496, 553, 1518, 2319
Mox20I TGGCCA 2 cut(s) 1196, 1341
Mph1103I ATGCAT 2 cut(s) 1449, 1656
MroI TCCGGA 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 2189
MscI TGGCCA 2 cut(s) 1196, 1341
MslI CAYNNNNRTG 8 cut(s) 45, 102, 1182, 1602, 1689, 1764, 2504, 2974
Msp20I TGGCCA 2 cut(s) 1196, 1341
MspA1I CMGCKG 2 cut(s) 2103, 2358
MspCI CTTAAG 1 cut(s) 2558
MspI CCGG 2 cut(s) 271, 401
MspR9I CCNGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
MunI CAATTG 1 cut(s) 1425
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 7 cut(s) 1163, 1193, 1453, 1980, 2100, 2106, 2364
NcoI CCATGG 1 cut(s) 2505
NdeI CATATG 3 cut(s) 588, 639, 2438
NheI GCTAGC 2 cut(s) 1219, 1271
NlaIV GGNNCC 7 cut(s) 841, 936, 959, 1530, 1864, 2108, 2343
NmeAIII GCCGAG 2 cut(s) 532, 1111
NmuCI GTSAC 2 cut(s) 1590, 3077
NruI TCGCGA 1 cut(s) 371
NsiI ATGCAT 2 cut(s) 1449, 1656
NspI RCATGY 3 cut(s) 1326, 1447, 2996
NspV TTCGAA 1 cut(s) 3008
OliI CACNNNNGTG 3 cut(s) 1602, 1689, 2974
PaeI GCATGC 1 cut(s) 1447
PaeR7I CTCGAG 2 cut(s) 155, 2846
PceI AGGCCT 2 cut(s) 1504, 1587
PciSI GCTCTTC 1 cut(s) 427
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 709
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 2189
PfeI GAWTC 5 cut(s) 1490, 1912, 2859, 2981, 3010
PflMI CCANNNNNTGG 1 cut(s) 1687
PkrI GCNGC 7 cut(s) 285, 1402, 1713, 1872, 2102, 2451, 2843
PleI GAGTC 6 cut(s) 595, 855, 2008, 2586, 2697, 2787
PpsI GAGTC 6 cut(s) 595, 855, 2008, 2586, 2697, 2787
Ppu21I YACGTR 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 934
PshAI GACNNNNGTC 1 cut(s) 2439
PshBI ATTAAT 2 cut(s) 564, 2007
Psp124BI GAGCTC 2 cut(s) 270, 439
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 6 cut(s) 354, 924, 952, 1983, 2178, 2734
PspFI CCCAGC 1 cut(s) 2103
PspGI CCWGG 6 cut(s) 354, 924, 952, 1983, 2178, 2734
PspN4I GGNNCC 7 cut(s) 841, 936, 959, 1530, 1864, 2108, 2343
PspPI GGNCC 5 cut(s) 934, 950, 1646, 2107, 2467
PspPPI RGGWCCY 1 cut(s) 934
PspXI VCTCGAGB 1 cut(s) 2846
PstI CTGCAG 1 cut(s) 1713
PstNI CAGNNNCTG 3 cut(s) 1854, 2103, 2547
PsuI RGATCY 9 cut(s) 397, 648, 839, 1528, 1539, 2167, 2341, 2833, 2938
PvuII CAGCTG 1 cut(s) 2358
RruI TCGCGA 1 cut(s) 371
RsaI GTAC 9 cut(s) 389, 1461, 1551, 1570, 1978, 2042, 2218, 2531, 2598
RsaNI GTAC 9 cut(s) 388, 1460, 1550, 1569, 1977, 2041, 2217, 2530, 2597
RseI CAYNNNNRTG 8 cut(s) 45, 102, 1182, 1602, 1689, 1764, 2504, 2974
SacI GAGCTC 2 cut(s) 270, 439
SalI GTCGAC 2 cut(s) 531, 550
SapI GCTCTTC 1 cut(s) 427
SatI GCNGC 7 cut(s) 284, 1401, 1712, 1871, 2101, 2450, 2842
Sau96I GGNCC 5 cut(s) 934, 950, 1646, 2107, 2467
SchI GAGTC 6 cut(s) 595, 855, 2009, 2586, 2698, 2788
ScrFI CCNGG 6 cut(s) 356, 926, 954, 1985, 2180, 2736
SduI GDGCHC 2 cut(s) 270, 439
SfaNI GCATC 8 cut(s) 531, 778, 877, 1039, 1369, 1756, 2880, 3054
SfcI CTRYAG 2 cut(s) 1533, 1709
Sfr274I CTCGAG 2 cut(s) 155, 2846
SfuI TTCGAA 1 cut(s) 3008
SinI GGWCC 3 cut(s) 934, 950, 2467
SlaI CTCGAG 2 cut(s) 155, 2846
SmiMI CAYNNNNRTG 8 cut(s) 45, 102, 1182, 1602, 1689, 1764, 2504, 2974
SmlI CTYRAG 9 cut(s) 155, 526, 1670, 2054, 2558, 2753, 2846, 2954, 3102
SmoI CTYRAG 9 cut(s) 155, 526, 1670, 2054, 2558, 2753, 2846, 2954, 3102
SnaBI TACGTA 1 cut(s) 116
SphI GCATGC 1 cut(s) 1447
SseBI AGGCCT 2 cut(s) 1504, 1587
SsiI CCGC 7 cut(s) 79, 215, 1005, 1941, 2101, 2256, 2323
SspI AATATT 3 cut(s) 616, 2190, 3098
SspMI CTAG 9 cut(s) 185, 1220, 1272, 1457, 1892, 2171, 2456, 2831, 3053
SstI GAGCTC 2 cut(s) 270, 439
StuI AGGCCT 2 cut(s) 1504, 1587
StyD4I CCNGG 6 cut(s) 354, 924, 952, 1983, 2178, 2734
StyI CCWWGG 2 cut(s) 539, 2505
TaaI ACNGT 8 cut(s) 293, 731, 1283, 1306, 1559, 2045, 2549, 2774
TaiI ACGT 5 cut(s) 118, 254, 348, 715, 747
TaqII GACCGA 2 cut(s) 938, 2405
TatI WGTACW 3 cut(s) 1459, 1549, 2040
TauI GCSGC 1 cut(s) 2103
TfiI GAWTC 5 cut(s) 1490, 1912, 2859, 2981, 3010
TscAI CASTG 9 cut(s) 298, 734, 1189, 1599, 1766, 2157, 2469, 2571, 2937
TseFI GTSAC 2 cut(s) 1590, 3077
TseI GCWGC 6 cut(s) 283, 1400, 1711, 1870, 2449, 2841
Tsp45I GTSAC 2 cut(s) 1590, 3077
TspDTI ATGAA 8 cut(s) 560, 608, 626, 822, 1218, 1304, 2182, 3101
TspGWI ACGGA 2 cut(s) 1900, 2131
TspRI CASTG 9 cut(s) 298, 734, 1189, 1599, 1766, 2157, 2469, 2571, 2937
Van91I CCANNNNNTGG 1 cut(s) 1687
Vha464I CTTAAG 1 cut(s) 2558
VpaK11BI GGWCC 3 cut(s) 934, 950, 2467
VspI ATTAAT 2 cut(s) 564, 2007
XagI CCTNNNNNAGG 3 cut(s) 382, 929, 2139
XapI RAATTY 2 cut(s) 2634, 2709
XbaI TCTAGA 2 cut(s) 2830, 3052
XceI RCATGY 3 cut(s) 1326, 1447, 2996
XcmI CCANNNNNNNNNTGG 2 cut(s) 481, 1688
XhoI CTCGAG 2 cut(s) 155, 2846
XmiI GTMKAC 2 cut(s) 532, 551
XmnI GAANNNNTTC 1 cut(s) 2189
XspI CTAG 9 cut(s) 185, 1220, 1272, 1457, 1892, 2171, 2456, 2831, 3053
Zsp2I ATGCAT 2 cut(s) 1449, 1656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.