AT4G09430

DNA-binding transcription factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016584
Physical Location & Seq
Forward (+)
5970908 .. 5973113
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09430.1

Sequence Viewer

Length: 1668 bp
ATGGCTTCCTCATCCACATCCTCTCCAACTCGAGTCAAGGAGTACGATGTCTTCCTCAGCTTTCGAGGGGCGGACACCCGCAATAACATAGTCAGCTATTTGCACAAAGCACTTGTTGATGTCGGAATCCGTACCTTCAAAGACGACAAGGAGCTTGAAGAAGGCGACATCATTTCTGAAAAACTTGTCAACGCTATACAAACTTCGTGGTTTGCTGTGGTTGTTCTCTCAGAAAAATATGTTACTTCAAGTTGGTGTTTGGAGGAACTCCGACATATAATGGAGCTTTCCATTCAGGATGACATTATAGTCGTTCCCATCTTTTATAAAGTAGAACCTTCAGACGTGAGATACCAGAAAAATAGCTTCGAGGTTAAGCTTCAGCACTACAGAGATCCAGAGAAGATTCTCAAATGGAAGGGAGCTCTCACTCAAGTTGGCAATATGTCAGGCAAGCATTTCCAGACATGTTCCGATGAGGCAACGAACATCGCAGAGATAGTTTCAAAAATTTCAAACCGACTGAGAAAGATGAAGCCTACAGATCTAATCAATTTAGTTGGAATGGATGCTCATATGGAGAAGATGCAACTCCTTTTGGATAAGGAGCCTAAAAGTGAGGTTAGAATGATAGGGATATTGGGTATGGGAGGCATAGGCAAGACCGCCATTGCCAACTATCTCTATAACCAATTCTCACATGAATATTGGGCACACTGTTTCATAGAAGACGCTTGGAACACCAATGACCCAACTCACCTACAAAGGAAATTGCTTTCCCATATCTGCAATGATGAAAATGCCAAGTTGTTTACCAGGGAAGCTGGAGCCATGAAGATTAAGGGTATACTTAAGCACAAGAAATTTTTTCTTGTGATAGATGGTGTGAATAAAGCAGAGCAAGTACATGCACTGGCAAAAGAGAGAAGCTGGTTTGGTCCAGGGAGCTTGATCATCATAACTACTCGAGATAGAGGTCTCCTCAATTCATGTGGAGTAAATAATGTATATGAGGTTAAGTGCTTGGATAGTAAGGATGCCCTCCAGGTTTTTGAAAAGTTTGCTTTTGGAGGAAGAAATCCTCCATTTCATGGTTCAGAGAGACTCTTTACCAGAGCTTCTCAGCTTGCTCACGGCCTACCTTATGCCCTTGTAGCTTTTGCTTCGCATCTCAGTGAACAGACCACCATAGAGGGATGGGAAGATGAATTATTTCGTCTAGAAGATTATCCTCAGAAGAATGTTGAAGAAATTTTGAGAGCTAGCTATGATGATTTAGATTATTACGAGCAGTCTGTTTTCCTTCAAGTGGCATGTCTCTTCAACGGAAGCTTTCTCTGGCTTATCAGAGCTTTTCTTGGGAAACTTGGTTCAAGGATAAATAGCTTACGGGCAAAGTCTCTCCTGGACATATCAAATGATGGACGTTTAATCATGCATTTCTTGGTTGAACAAATAGGAAAAGAAATTGTGCGCCAACAATCCAACTGTATACCTTCCGAGCAAAAGTTCTTGTGGAAGCCGGAAGAGATCTATGATGTACTCGCAAGGAACATAGGTACATCCAAAATACATGGGGTGTCACTAGAAATGTGTGATCTGTCTGACACTTTACGTATAGGGAGCAGTGCAGGCCAATGCGTGATCTCACATTTCTCAAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 map04612 map05152
Pfam Domains
Protein Families
CBFB_NFYA

Protein Analysis

555

Amino Acids

63.15

Weight (kDa)

6.4

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 15 - 182 2.2e-48 TIR domain
TIR_2 PF13676 17 - 113 4.1e-15 TIR domain
NB-ARC PF00931 190 - 357 4.3e-20 NB-ARC domain
WHD_ROQ1 PF23282 430 - 495 5e-09 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AasI GACNNNNNNGTC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 1091
AccI GTMKAC 2 cut(s) 847, 1492
AciI CCGC 3 cut(s) 71, 79, 666
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 3 cut(s) 510, 863, 1251
AcuI CTGAAG 2 cut(s) 324, 365
AfaI GTAC 5 cut(s) 44, 133, 906, 1542, 1561
AfiI CCNNNNNNNGG 2 cut(s) 1091, 1309
AflII CTTAAG 1 cut(s) 851
AflIII ACRYGT 1 cut(s) 467
AjiI CACGTC 1 cut(s) 346
AjnI CCWGG 4 cut(s) 815, 940, 1044, 1404
AloI GAACNNNNNNTCC 2 cut(s) 1354, 1386
Alw21I GWGCWC 1 cut(s) 427
Alw26I GTCTC 4 cut(s) 983, 1096, 1322, 1404
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 2 cut(s) 30, 966
AoxI GGCC 2 cut(s) 1135, 1633
ApoI RAATTY 3 cut(s) 510, 863, 1251
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 1 cut(s) 1476
AspS9I GGNCC 1 cut(s) 938
AsuHPI GGTGA 1 cut(s) 749
AsuNHI GCTAGC 1 cut(s) 1262
AvaI CYCGRG 2 cut(s) 30, 966
AvaII GGWCC 1 cut(s) 938
BaeGI GKGCMC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 427
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbsI GAAGAC 2 cut(s) 43, 735
Bbv12I GWGCWC 1 cut(s) 427
BbvCI CCTCAGC 1 cut(s) 56
BccI CCATC 4 cut(s) 326, 875, 1191, 1415
BceAI ACGGC 1 cut(s) 1150
BciT130I CCWGG 4 cut(s) 817, 942, 1046, 1406
BclI TGATCA 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 983, 1096, 1322, 1404
BfaI CTAG 3 cut(s) 1220, 1263, 1586
BfmI CTRYAG 2 cut(s) 388, 540
BfrI CTTAAG 1 cut(s) 851
BglII AGATCT 2 cut(s) 544, 1530
Bme1390I CCNGG 4 cut(s) 817, 942, 1046, 1406
Bme18I GGWCC 1 cut(s) 938
BmeT110I CYCGRG 2 cut(s) 30, 966
BmgBI CACGTC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 938
BmiI GGNNCC 2 cut(s) 609, 829
BmrFI CCNGG 4 cut(s) 817, 942, 1046, 1406
BmsI GCATC 4 cut(s) 559, 576, 1027, 1177
BmtI GCTAGC 1 cut(s) 1266
BpiI GAAGAC 2 cut(s) 43, 735
BplI GAGNNNNNCTC 2 cut(s) 966, 998
BpmI CTGGAG 2 cut(s) 846, 1028
Bpu10I CCTNAGC 1 cut(s) 56
BpuEI CTTGAG 2 cut(s) 417, 1642
BsaAI YACGTR 1 cut(s) 1616
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 2 cut(s) 816, 941
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 1091, 1309
Bse1I ACTGG 1 cut(s) 918
Bse3DI GCAATG 2 cut(s) 669, 796
BseBI CCWGG 4 cut(s) 817, 942, 1046, 1406
BseDI CCNNGG 2 cut(s) 816, 941
BseGI GGATG 7 cut(s) 11, 17, 304, 574, 1042, 1202, 1562
BseLI CCNNNNNNNGG 2 cut(s) 1091, 1309
BseMI GCAATG 2 cut(s) 669, 796
BseMII CTCAG 6 cut(s) 70, 243, 515, 1136, 1186, 1247
BseNI ACTGG 1 cut(s) 918
BseRI GAGGAG 1 cut(s) 971
BseSI GKGCMC 1 cut(s) 715
BsgI GTGCAG 1 cut(s) 1650
BshFI GGCC 2 cut(s) 1137, 1635
BsiHKAI GWGCWC 1 cut(s) 427
BsiHKCI CYCGRG 2 cut(s) 30, 966
BsiSI CCGG 1 cut(s) 1523
BslI CCNNNNNNNGG 2 cut(s) 1091, 1309
BsmAI GTCTC 4 cut(s) 983, 1096, 1322, 1404
BsnI GGCC 2 cut(s) 1137, 1635
Bso31I GGTCTC 1 cut(s) 983
BsoBI CYCGRG 2 cut(s) 30, 966
Bsp1286I GDGCHC 2 cut(s) 427, 715
Bsp143I GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
BspACI CCGC 3 cut(s) 71, 79, 666
BspANI GGCC 2 cut(s) 1137, 1635
BspCNI CTCAG 6 cut(s) 69, 242, 516, 1135, 1185, 1246
BspLI GGNNCC 2 cut(s) 609, 829
BspOI GCTAGC 1 cut(s) 1266
BspPI GGATC 1 cut(s) 389
BspTI CTTAAG 1 cut(s) 851
BspTNI GGTCTC 1 cut(s) 983
BsrDI GCAATG 2 cut(s) 669, 796
BsrI ACTGG 1 cut(s) 918
BssECI CCNNGG 2 cut(s) 816, 941
BssMI GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
BssNAI GTATAC 2 cut(s) 848, 1493
Bst1107I GTATAC 2 cut(s) 848, 1493
Bst2UI CCWGG 4 cut(s) 817, 942, 1046, 1406
Bst4CI ACNGT 2 cut(s) 719, 1490
Bst6I CTCTTC 2 cut(s) 1325, 1521
BstAFI CTTAAG 1 cut(s) 851
BstBAI YACGTR 1 cut(s) 1616
BstC8I GCNNGC 4 cut(s) 455, 1128, 1264, 1633
BstDEI CTNAG 6 cut(s) 56, 229, 524, 1122, 1172, 1233
BstF5I GGATG 7 cut(s) 11, 17, 304, 574, 1042, 1202, 1562
BstHHI GCGC 1 cut(s) 1476
BstKTI GATC 6 cut(s) 397, 547, 954, 1533, 1600, 1647
BstMAI GTCTC 4 cut(s) 983, 1096, 1322, 1404
BstMBI GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
BstMWI GCNNNNNNNGC 2 cut(s) 1154, 1632
BstNI CCWGG 4 cut(s) 817, 942, 1046, 1406
BstNSI RCATGY 3 cut(s) 471, 911, 1317
BstSCI CCNGG 4 cut(s) 815, 940, 1044, 1404
BstSFI CTRYAG 2 cut(s) 388, 540
BstSLI GKGCMC 1 cut(s) 715
BstSNI TACGTA 1 cut(s) 1616
BstV2I GAAGAC 2 cut(s) 43, 735
BstX2I RGATCY 3 cut(s) 394, 544, 1530
BstYI RGATCY 3 cut(s) 394, 544, 1530
BstZ17I GTATAC 2 cut(s) 848, 1493
BsuRI GGCC 2 cut(s) 1137, 1635
BtgZI GCGATG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 346
BtsCI GGATG 7 cut(s) 11, 17, 304, 574, 1042, 1202, 1562
BtsI GCAGTG 1 cut(s) 1633
BtsIMutI CAGTG 4 cut(s) 715, 911, 1180, 1633
Cac8I GCNNGC 4 cut(s) 455, 1128, 1264, 1633
CfoI GCGC 1 cut(s) 1476
Cfr13I GGNCC 1 cut(s) 938
CseI GACGC 1 cut(s) 740
Csp6I GTAC 5 cut(s) 43, 132, 905, 1541, 1560
CspCI CAANNNNNGTGG 4 cut(s) 188, 223, 973, 1008
CviAII CATG 9 cut(s) 468, 701, 832, 908, 990, 1091, 1314, 1435, 1574
CviQI GTAC 5 cut(s) 43, 132, 905, 1541, 1560
DdeI CTNAG 6 cut(s) 56, 229, 524, 1122, 1172, 1233
DpnI GATC 6 cut(s) 396, 546, 953, 1532, 1599, 1646
DpnII GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 1325, 1521
EarI CTCTTC 2 cut(s) 1325, 1521
EciI GGCGGA 1 cut(s) 86
Ecl136II GAGCTC 1 cut(s) 425
Eco105I TACGTA 1 cut(s) 1616
Eco24I GRGCYC 1 cut(s) 427
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 1 cut(s) 938
Eco53kI GAGCTC 1 cut(s) 425
Eco57I CTGAAG 2 cut(s) 324, 365
Eco88I CYCGRG 2 cut(s) 30, 966
EcoICRI GAGCTC 1 cut(s) 425
EcoRII CCWGG 4 cut(s) 815, 940, 1044, 1404
EcoT22I ATGCAT 1 cut(s) 1440
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 9 cut(s) 471, 704, 835, 911, 993, 1094, 1317, 1438, 1577
FatI CATG 9 cut(s) 467, 700, 831, 907, 989, 1090, 1313, 1434, 1573
FauI CCCGC 1 cut(s) 86
FauNDI CATATG 1 cut(s) 576
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 2 cut(s) 847, 1492
FokI GGATG 6 cut(s) 4, 311, 581, 1049, 1209, 1549
FriOI GRGCYC 1 cut(s) 427
FspBI CTAG 3 cut(s) 1220, 1263, 1586
GlaI GCGC 1 cut(s) 1475
GsuI CTGGAG 2 cut(s) 846, 1028
HaeIII GGCC 2 cut(s) 1137, 1635
HapII CCGG 1 cut(s) 1523
HgaI GACGC 1 cut(s) 740
HhaI GCGC 1 cut(s) 1476
Hin1II CATG 9 cut(s) 471, 704, 835, 911, 993, 1094, 1317, 1438, 1577
Hin6I GCGC 1 cut(s) 1474
HinP1I GCGC 1 cut(s) 1474
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 2 cut(s) 377, 1330
HinfI GANTC 4 cut(s) 33, 126, 406, 1104
HpaII CCGG 1 cut(s) 1523
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 5 cut(s) 190, 813, 848, 1178, 1493
Hpy188III TCNNGA 5 cut(s) 296, 398, 463, 968, 1220
Hpy8I GTNNAC 5 cut(s) 190, 813, 848, 1178, 1493
HpyAV CCTTC 6 cut(s) 145, 155, 348, 412, 1313, 1506
HpyCH4III ACNGT 2 cut(s) 719, 1490
HpyCH4IV ACGT 3 cut(s) 345, 1426, 1615
HpyCH4V TGCA 6 cut(s) 103, 589, 789, 911, 1438, 1631
HpyF10VI GCNNNNNNNGC 2 cut(s) 1154, 1632
HpyF3I CTNAG 6 cut(s) 56, 229, 524, 1122, 1172, 1233
HpySE526I ACGT 3 cut(s) 345, 1426, 1615
Hsp92II CATG 9 cut(s) 471, 704, 835, 911, 993, 1094, 1317, 1438, 1577
HspAI GCGC 1 cut(s) 1474
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
LmnI GCTCC 7 cut(s) 151, 283, 422, 607, 827, 945, 1623
LweI GCATC 4 cut(s) 559, 576, 1027, 1177
MaeI CTAG 3 cut(s) 1220, 1263, 1586
MaeII ACGT 3 cut(s) 345, 1426, 1615
MaeIII GTNAC 2 cut(s) 241, 1581
MalI GATC 6 cut(s) 396, 546, 953, 1532, 1599, 1646
MboI GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
MflI RGATCY 3 cut(s) 394, 544, 1530
MhlI GDGCHC 2 cut(s) 427, 715
MluCI AATT 9 cut(s) 510, 553, 692, 770, 863, 985, 1208, 1251, 1467
MlyI GAGTC 2 cut(s) 42, 1098
MmeI TCCRAC 5 cut(s) 50, 103, 295, 541, 1509
Mph1103I ATGCAT 1 cut(s) 1440
MroXI GAANNNNTTC 1 cut(s) 1212
MseI TTAA 6 cut(s) 375, 840, 852, 1017, 1430, 1666
MslI CAYNNNNRTG 1 cut(s) 1173
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 1 cut(s) 1523
MspR9I CCNGG 4 cut(s) 817, 942, 1046, 1406
MvaI CCWGG 4 cut(s) 817, 942, 1046, 1406
MwoI GCNNNNNNNGC 2 cut(s) 1154, 1632
NdeI CATATG 1 cut(s) 576
NdeII GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
NheI GCTAGC 1 cut(s) 1262
NlaIII CATG 9 cut(s) 471, 704, 835, 911, 993, 1094, 1317, 1438, 1577
NlaIV GGNNCC 2 cut(s) 609, 829
NmuCI GTSAC 1 cut(s) 1581
NsiI ATGCAT 1 cut(s) 1440
NspI RCATGY 3 cut(s) 471, 911, 1317
PaeR7I CTCGAG 2 cut(s) 30, 966
PciI ACATGT 1 cut(s) 467
PdmI GAANNNNTTC 1 cut(s) 1212
PfeI GAWTC 2 cut(s) 126, 406
PflMI CCANNNNNTGG 1 cut(s) 1091
PfoI TCCNGGA 1 cut(s) 1404
PleI GAGTC 2 cut(s) 41, 1098
PpsI GAGTC 2 cut(s) 41, 1098
Ppu21I YACGTR 1 cut(s) 1616
PscI ACATGT 1 cut(s) 467
PsiI TTATAA 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 4 cut(s) 815, 940, 1044, 1404
PspGI CCWGG 4 cut(s) 815, 940, 1044, 1404
PspN4I GGNNCC 2 cut(s) 609, 829
PspPI GGNCC 1 cut(s) 938
PspXI VCTCGAGB 1 cut(s) 30
PsuI RGATCY 3 cut(s) 394, 544, 1530
RsaI GTAC 5 cut(s) 44, 133, 906, 1542, 1561
RsaNI GTAC 5 cut(s) 43, 132, 905, 1541, 1560
RseI CAYNNNNRTG 1 cut(s) 1173
SacI GAGCTC 1 cut(s) 427
SaqAI TTAA 6 cut(s) 375, 840, 852, 1017, 1430, 1666
Sau3AI GATC 6 cut(s) 394, 544, 951, 1530, 1597, 1644
Sau96I GGNCC 1 cut(s) 938
SchI GAGTC 2 cut(s) 42, 1098
ScrFI CCNGG 4 cut(s) 817, 942, 1046, 1406
SduI GDGCHC 2 cut(s) 427, 715
SfaNI GCATC 4 cut(s) 559, 576, 1027, 1177
SfcI CTRYAG 2 cut(s) 388, 540
Sfr274I CTCGAG 2 cut(s) 30, 966
SinI GGWCC 1 cut(s) 938
SlaI CTCGAG 2 cut(s) 30, 966
SmiMI CAYNNNNRTG 1 cut(s) 1173
SmlI CTYRAG 5 cut(s) 30, 432, 851, 966, 1657
SmoI CTYRAG 5 cut(s) 30, 432, 851, 966, 1657
SnaBI TACGTA 1 cut(s) 1616
Sse9I AATT 9 cut(s) 510, 553, 692, 770, 863, 985, 1208, 1251, 1467
SsiI CCGC 3 cut(s) 71, 79, 666
SspI AATATT 1 cut(s) 707
SspMI CTAG 3 cut(s) 1220, 1263, 1586
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 4 cut(s) 815, 940, 1044, 1404
TaaI ACNGT 2 cut(s) 719, 1490
TaiI ACGT 3 cut(s) 348, 1429, 1618
TaqI TCGA 4 cut(s) 31, 64, 369, 967
TasI AATT 9 cut(s) 510, 553, 692, 770, 863, 985, 1208, 1251, 1467
TatI WGTACW 2 cut(s) 904, 1540
TfiI GAWTC 2 cut(s) 126, 406
Tru1I TTAA 6 cut(s) 375, 840, 852, 1017, 1430, 1666
Tru9I TTAA 6 cut(s) 375, 840, 852, 1017, 1430, 1666
TscAI CASTG 4 cut(s) 722, 918, 1180, 1633
TseFI GTSAC 1 cut(s) 1581
Tsp45I GTSAC 1 cut(s) 1581
TspDTI ATGAA 8 cut(s) 548, 712, 717, 810, 848, 978, 1079, 1221
TspGWI ACGGA 2 cut(s) 119, 1341
TspRI CASTG 4 cut(s) 722, 918, 1180, 1633
Van91I CCANNNNNTGG 1 cut(s) 1091
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 938
XapI RAATTY 3 cut(s) 510, 863, 1251
XbaI TCTAGA 1 cut(s) 1219
XceI RCATGY 3 cut(s) 471, 911, 1317
XhoI CTCGAG 2 cut(s) 30, 966
XmiI GTMKAC 2 cut(s) 847, 1492
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 3 cut(s) 1220, 1263, 1586
Zsp2I ATGCAT 1 cut(s) 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.