AT5G48770

Toll - interleukin 1 - resistance

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
19773117 .. 19777242
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48770.1

Sequence Viewer

Length: 3573 bp
ATGGCTTCTTCGTCTTTGTCTTCACCTCCTCCCTGTAACTATGATGTCTTCCTAAGCTTCCGTGGGGAAGATACACGTAGAACCATTGTCAGCCATTTGTACGCAGCACTTGGTGCAAAGGGAATCATTACTTTCAAAGACGATCAAGATCTTGAGGTAGGTGATCATATTTCTAGCCACCTCCGCAGAGCCATAGAAGGTTCAAAGTTCGCTGTTGTGGTTCTCTCTGAAAGATACACAACGTCAAGGTGGTGCTTGATGGAACTGCAATTAATAATGGAATTGTACAACCTTGGTAAACTCAAAGTCCTTCCCTTGTTCTATGAAGTTGATCCCTCTGACGTGAGACACCAGCGAGGAAGTTTTGGTTTAGAAAGGTACCAGGGTCCAGAATTCGCGGATATTGTGCAAAGGTGGAGAGTAGCTCTGTGCATGGTAGCCAATCTCTCAGGCATGGTTTCCAGATATTGTGCGGACGAGGCTATGATGCTTGAAGAAATTGTTGAAGTCATCTCAAGCCGGTTAGCTTCTATGCAAGCAACTTCTTTTGAAGATTTAGTTGGTATGGAAGCTCACATGGAAAACATAAGACCTCTCTTGAAGAAAGACTTTGATGCCGAGGTTTGTATGGTTGGAATATGGGGAATGGGGGGCATCGGAAAAACTACCATTGCTAAGTATCTATATGAACAGCTTGCAAGCCAATTTCCAGCTCATTCTTTCATTGAAGATGTCGGCCAAATCTGTAAGAAAGTTGATCTAAAATGTATACAACAACAACTTCTCTGCGATATTCTAAGTACAAAACGAGTGGCCTTGATGAGCATCCAAAACGGTGCAAACCTTATTCGGTCAAGGCTTGGAACCCTCAAGGTTCTCTTTGTGCTTGATGGTGTTGATAAAGTGGAGCAGTTACATGCCTTGGCAAAGGAGGCTAGCTGGTTTGGTCCAGGGAGCCGAATCATTATAACCACACGTGACAGAAGATTGCTAGATTCCTGCAGAGTGACCAACAAGTACGAGGTTAAATGCTTGCAAAATGAGGACTCGTTAAAGATTGTTAAAAATATTGCTTTTGCAGGCGGAGTTCCTACACTTGATGGATATGAACGTTTTGCGATTCGAGCATCTCAGCTCGCTCAAGGTCTTCCTTTAGCCCTGGTAGCTTTCGGTTCATTTCTCCGTGGAGCGACCTCTATAGACGAGTGGGAAGATGCAATAGACACGCTTGAAACAGCTCCTCACCAGAATATCATGGATATTTTAAGAAGTAGCTATACCAATCTGGACCTACGAGACAAGACCATTTTCATTAGGGTCGCATGTCTTTTCAATGGAGAACCAGTCTCCCGTGTTTCTACCCTTCTCTCTGAAACTAAAAGAAGGATAAAAGGTTTAGCTGAAAAGTCTCTCATCCATATATCAAAAGATGGATATATTGACATACATTCCTTGATAAAACAAATGGCTAGAGAAATTGTTGTTGAAGAATCATTGTACATACCTCGACAACAAAGAATTTTGTGGGATCCTCATAACAGTTATGGCGTACTGGAAAGCAAAACAGGGACAGAGAGAATCCAAGGCATGACACTACATATGTGTGAATTGCCCCGAGCAGCATCCATAGATGGGAGTGCTTTTGAGCAGATGGAAAATCTCATATTTCTCAAATTCTTCAAACACTTAAATGATAGAGAGTCCAAGCTGAATATCAATTCAAAGAATCGTATGGTACTTCCACGCAGCCTTAGGCTATTGCATTGGGACGCATATCCATTAACAACCTTGCTTCCCACATTTCCTCTGAGTCGTCTTGTTGAACTTCATCTGCGTTACAGCAATCTGGAGAACCTGTGGGATGGAAAAATGTCGCTCTTGGAGTTAAGGATGCTAGATGTCACTGGATCTAAGAATCTGACCAAACTTCCAGATCTTTCAAGGGCAACAAAGCTTGAGGAGCTGATTGCTAAAGGTTGCACGAGGTTGGAGCAAATCCCGGAAACAATTGGTAGCTTACCTTCACTGAAGAAACTTGATGTATCCCACTGTGATCGCCTCATCAATCTTCAGATGATTATAGGAGAATTGCCTGCCCTTCAAAAACGTAGCCCAGGGCTTTTTCGGCAAGCTTCATTGAGTTTCCCAGATGCTGTAGTTACACTGAACTCTCTTACGAGTCTAGCCATCCATGGCAAATTAAATTTTTGGTTGTCACATCTCCGAGGAAAGGCAGACCACCTCTGCTTTAGTTCCGAGCAATGGACCCCTAACAAATTTCTGAAGCAAGTACAAAAGACGCCTAAGCTCATGTCTGAGTTTTACGGATTTAAATCACTCGACATCATGCAGTTCATCTACCGTAAAGACAGTGCCTCTTTCCAGTGTTATAGCTTTTCAGATTTCCTCTGGTTAACCGAGTTAAATCTCATAAACCTAAACATAGAAAGCATCCCAGATGACATTGGCCTTTTGCAGGTCCTACAAAAACTGGACCTCAGCGGAAATGATTTCACATGCCTACCCACAGATATGGAAAATCTTTCTAGTATGAAATCTCTCAGGCTTTGCAACTGCCTCAAACTTCAAACACTACCAAAACTACCTCAACTGGAGACACTCAAACTTTCTAACTGTATACTTCTCCAAAGTCCACTAGGACATTCAGCTGCCAGAAAAGATGAGCGTGGATACCGCTTAGCTGAGCTTTGGCTTGACAACTGCAATGATGTTTTTGAATTGTCATATACGTTTAGTCATTGCACCAATTTAACATACTTAGACCTCAGCGGAAATGATATGGTGACGATGCCTGTAACTATCAGATTCCTTAGGCTGTTGAATACTCTCTGCCTCAATGACTGCAAGAAACTCAAGTCAATGGTACAGCTTCCACCAAACCTTACATCTCTCTATGCACGTGGCTGCACTTCCCTGGAAATTATTCACCTTCCCTTGGATCATTCCATAAAACACGTTGATCTTAGCTACTGCCCCAAATTGAATGAAGTTGCGAATCTGATGGATCGATTTCTGAGATGTGGACGAAAGGAAGAGGTGCCTCAGCGTTTTGCTTGCTTATCTGGAAGTAGAGTGCCCATCTACTTCGACTATCAAGCAAGGGAATATTCCAGAGAAATCAGCATACCCCCAATATGGCATGCCTCTGAGTTTGTGGGTTTTGATGCCTGTATCATAATTGCTTGTCAGAGTCCTTATCACATAAAGCTCTCGTCATCTTCTTATAGCTGTAAACAGGAAGATAACCAGTCCTACCGAATTGACCTCAAGCCCGATTTCGTTCTCCCACCGGAGAGTACTCGTAGCAGCAATGACAAAGAGGCATTCTCAGCACATCACATGTTCATCTTCCACGTTCCAAGTAACGTAGACTTCAACGAGTTTAGCCTTGAGCCAAAACTTGTAATTTCAGAGGAGTTTCAGTCTACACCGGGCAGAATAATATCATACGGAGTTCGAGTAGTACTCAAAACTGAAGAGGATGATCGAAACTACGACATAAACTGCGGAAACCTATCCAAAAAAAGGAAAACAGATATGTTGACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1190

Amino Acids

135.26

Weight (kDa)

6.99

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 13 - 188 2.8e-46 TIR domain
TIR_2 PF13676 16 - 112 6e-18 TIR domain
NB-ARC PF00931 190 - 360 1.5e-18 NB-ARC domain
WHD_ROQ1 PF23282 432 - 498 5.4e-11 Disease resistance protein Roq1-like, winged-helix domain
LRR_3 PF07725 606 - 623 1.1e-06 Leucine Rich Repeat
LRR_14 PF23598 766 - 878 1.9e-09 Leucine-rich repeat region
C-JID PF20160 1027 - 1103 1.9e-07 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 968
Acc36I ACCTGC 1 cut(s) 2467
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 378, 3058
AccI GTMKAC 4 cut(s) 769, 2638, 3390, 3446
AccII CGCG 1 cut(s) 398
AciI CCGC 8 cut(s) 184, 398, 473, 1083, 2502, 2695, 2790, 3528
AclI AACGTT 1 cut(s) 1111
AclWI GGATC 6 cut(s) 326, 1523, 1536, 1915, 2967, 3033
AcoI YGGCCR 1 cut(s) 736
AcsI RAATTY 5 cut(s) 392, 1518, 1673, 2203, 2276
AcuI CTGAAG 4 cut(s) 2048, 2054, 2303, 3516
AcvI CACGTG 2 cut(s) 977, 2921
AcyI GRCGYC 1 cut(s) 2300
AdeI CACNNNGTG 1 cut(s) 113
AfiI CCNNNNNNNGG 7 cut(s) 1632, 2230, 2262, 2476, 2956, 3156, 3546
AflIII ACRYGT 4 cut(s) 74, 974, 2974, 3360
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 5 cut(s) 381, 949, 1158, 2113, 2934
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
Alw26I GTCTC 5 cut(s) 340, 1290, 1351, 1413, 2609
AlwI GGATC 6 cut(s) 326, 1523, 1536, 1915, 2967, 3033
AlwNI CAGNNNCTG 1 cut(s) 2153
Ama87I CYCGRG 1 cut(s) 1614
AoxI GGCC 3 cut(s) 736, 813, 2467
ApeKI GCWGC 6 cut(s) 104, 1619, 1746, 2669, 2925, 3327
ApoI RAATTY 5 cut(s) 392, 1518, 1673, 2203, 2276
AseI ATTAAT 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 2943
Asp718I GGTACC 1 cut(s) 378
AspS9I GGNCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
AsuC2I CCSGG 2 cut(s) 2000, 3453
AsuHPI GGTGA 5 cut(s) 15, 173, 1235, 2815, 2939
AsuNHI GCTAGC 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 1614
AvaII GGWCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
AxyI CCTNAGG 2 cut(s) 1751, 2831
BaeGI GKGCMC 1 cut(s) 3099
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BamHI GGATCC 1 cut(s) 1528
BanI GGYRCC 2 cut(s) 378, 3058
BarI GAAGNNNNNNTAC 4 cut(s) 1261, 1293, 2005, 2037
BauI CACGAG 1 cut(s) 1981
BbrPI CACGTG 2 cut(s) 977, 2921
BbsI GAAGAC 3 cut(s) 12, 40, 1139
BbvCI CCTCAGC 3 cut(s) 2498, 2786, 3063
BbvI GCAGC 6 cut(s) 116, 1631, 1758, 2656, 2912, 3339
BciT130I CCWGG 5 cut(s) 383, 951, 1160, 2115, 2936
BciVI GTATCC 2 cut(s) 2053, 2684
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 2 cut(s) 2000, 3453
BcoDI GTCTC 5 cut(s) 340, 1290, 1351, 1413, 2609
BfaI CTAG 8 cut(s) 174, 936, 992, 1470, 1895, 2183, 2547, 2657
BfmI CTRYAG 3 cut(s) 1000, 1197, 2154
BfuAI ACCTGC 1 cut(s) 2467
BfuI GTATCC 2 cut(s) 2053, 2684
BglII AGATCT 2 cut(s) 148, 1933
BisI GCNGC 6 cut(s) 105, 1620, 1747, 2670, 2926, 3328
BlpI GCTNAGC 2 cut(s) 2698, 2703
BlsI GCNGC 6 cut(s) 106, 1621, 1748, 2671, 2927, 3329
BmcAI AGTACT 2 cut(s) 3319, 3486
Bme1390I CCNGG 7 cut(s) 383, 951, 1160, 2000, 2115, 2936, 3453
Bme18I GGWCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
BmeT110I CYCGRG 1 cut(s) 1614
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
BmiI GGNNCC 7 cut(s) 380, 387, 865, 956, 1530, 2267, 3060
BmrFI CCNGG 7 cut(s) 383, 951, 1160, 2000, 2115, 2936, 3453
BmtI GCTAGC 1 cut(s) 939
BpiI GAAGAC 3 cut(s) 12, 40, 1139
BplI GAGNNNNNCTC 6 cut(s) 409, 441, 3332, 3364, 3471, 3503
BpmI CTGGAG 2 cut(s) 1868, 2633
Bpu10I CCTNAGC 5 cut(s) 53, 2304, 2498, 2786, 3063
Bpu1102I GCTNAGC 2 cut(s) 2698, 2703
BpuEI CTTGAG 8 cut(s) 173, 499, 854, 1125, 1976, 2858, 3272, 3431
BpuMI CCSGG 2 cut(s) 2000, 3453
Bsa29I ATCGAT 1 cut(s) 3028
BsaAI YACGTR 3 cut(s) 77, 977, 2921
BsaBI GATNNNNATC 3 cut(s) 147, 824, 2332
BsaHI GRCGYC 1 cut(s) 2300
BsaWI WCCGGW 1 cut(s) 3310
BsaXI ACNNNNNCTCC 8 cut(s) 1329, 1359, 1841, 1871, 3428, 3458, 3465, 3495
Bsc4I CCNNNNNNNGG 7 cut(s) 1632, 2230, 2262, 2476, 2956, 3156, 3546
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 7 cut(s) 1343, 1557, 1909, 2383, 2496, 2616, 3268
Bse21I CCTNAGG 2 cut(s) 1751, 2831
Bse3DI GCAATG 5 cut(s) 669, 2267, 2731, 2758, 3337
Bse8I GATNNNNATC 3 cut(s) 147, 824, 2332
BseBI CCWGG 5 cut(s) 383, 951, 1160, 2115, 2936
BseCI ATCGAT 1 cut(s) 3028
BseGI GGATG 8 cut(s) 825, 1413, 1622, 1867, 1896, 2187, 2451, 3508
BseJI GATNNNNATC 3 cut(s) 147, 824, 2332
BseLI CCNNNNNNNGG 7 cut(s) 1632, 2230, 2262, 2476, 2956, 3156, 3546
BseMI GCAATG 5 cut(s) 669, 2267, 2731, 2758, 3337
BseNI ACTGG 7 cut(s) 1343, 1557, 1909, 2383, 2496, 2616, 3268
BseRI GAGGAG 4 cut(s) 18, 1230, 1973, 3449
BseSI GKGCMC 1 cut(s) 3099
BseXI GCAGC 6 cut(s) 116, 1631, 1758, 2656, 2912, 3339
BsgI GTGCAG 1 cut(s) 2911
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 3 cut(s) 738, 815, 2469
BshNI GGYRCC 2 cut(s) 378, 3058
BshVI ATCGAT 1 cut(s) 3028
BsiHKCI CYCGRG 1 cut(s) 1614
BsiSI CCGG 4 cut(s) 520, 2000, 3311, 3452
BslFI GGGAC 2 cut(s) 1582, 1781
BslI CCNNNNNNNGG 7 cut(s) 1632, 2230, 2262, 2476, 2956, 3156, 3546
BsmAI GTCTC 5 cut(s) 340, 1290, 1351, 1413, 2609
BsmFI GGGAC 2 cut(s) 1582, 1781
BsmI GAATGC 1 cut(s) 3344
BsnI GGCC 3 cut(s) 738, 815, 2469
BsoBI CYCGRG 1 cut(s) 1614
Bsp1286I GDGCHC 1 cut(s) 3099
Bsp1407I TGTACA 2 cut(s) 285, 1497
Bsp1720I GCTNAGC 2 cut(s) 2698, 2703
Bsp19I CCATGG 1 cut(s) 2191
BspACI CCGC 8 cut(s) 184, 398, 473, 1083, 2502, 2695, 2790, 3528
BspANI GGCC 3 cut(s) 738, 815, 2469
BspDI ATCGAT 1 cut(s) 3028
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 7 cut(s) 380, 387, 865, 956, 1530, 2267, 3060
BspMAI CTGCAG 1 cut(s) 1004
BspMI ACCTGC 1 cut(s) 2467
BspOI GCTAGC 1 cut(s) 939
BspPI GGATC 6 cut(s) 326, 1523, 1536, 1915, 2967, 3033
BspT107I GGYRCC 2 cut(s) 378, 3058
BsrDI GCAATG 5 cut(s) 669, 2267, 2731, 2758, 3337
BsrFI RCCGGY 1 cut(s) 519
BsrGI TGTACA 2 cut(s) 285, 1497
BsrI ACTGG 7 cut(s) 1343, 1557, 1909, 2383, 2496, 2616, 3268
BssAI RCCGGY 1 cut(s) 519
BssNAI GTATAC 2 cut(s) 770, 2639
BssNI GRCGYC 1 cut(s) 2300
BssSI CACGAG 1 cut(s) 1981
BssT1I CCWWGG 5 cut(s) 292, 921, 1582, 2191, 2955
Bst1107I GTATAC 2 cut(s) 770, 2639
Bst2BI CACGAG 1 cut(s) 1981
Bst2UI CCWGG 5 cut(s) 383, 951, 1160, 2115, 2936
Bst4CI ACNGT 6 cut(s) 836, 1541, 2051, 2363, 2372, 2636
Bst6I CTCTTC 2 cut(s) 3048, 3492
BstACI GRCGYC 1 cut(s) 2300
BstAPI GCANNNNNTGC 1 cut(s) 113
BstAUI TGTACA 2 cut(s) 285, 1497
BstBAI YACGTR 3 cut(s) 77, 977, 2921
BstDSI CCRYGG 3 cut(s) 61, 1183, 2191
BstENI CCTNNNNNAGG 1 cut(s) 2474
BstF5I GGATG 8 cut(s) 825, 1413, 1622, 1867, 1896, 2187, 2451, 3508
BstFNI CGCG 1 cut(s) 398
BstMAI GTCTC 5 cut(s) 340, 1290, 1351, 1413, 2609
BstMWI GCNNNNNNNGC 9 cut(s) 113, 183, 479, 932, 1124, 1163, 1960, 2125, 3350
BstNI CCWGG 5 cut(s) 383, 951, 1160, 2115, 2936
BstNSI RCATGY 5 cut(s) 920, 1326, 2520, 3164, 3364
BstSCI CCNGG 7 cut(s) 381, 949, 1158, 1998, 2113, 2934, 3451
BstSFI CTRYAG 3 cut(s) 1000, 1197, 2154
BstSLI GKGCMC 1 cut(s) 3099
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 6 cut(s) 116, 1631, 1758, 2656, 2912, 3339
BstV2I GAAGAC 3 cut(s) 12, 40, 1139
BstX2I RGATCY 4 cut(s) 148, 1528, 1907, 1933
BstXI CCANNNNNNTGG 1 cut(s) 2533
BstYI RGATCY 4 cut(s) 148, 1528, 1907, 1933
BstZ17I GTATAC 2 cut(s) 770, 2639
Bsu15I ATCGAT 1 cut(s) 3028
Bsu36I CCTNAGG 2 cut(s) 1751, 2831
BsuI GTATCC 2 cut(s) 2053, 2684
BsuRI GGCC 3 cut(s) 738, 815, 2469
BsuTUI ATCGAT 1 cut(s) 3028
BtgI CCRYGG 3 cut(s) 61, 1183, 2191
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 8 cut(s) 825, 1413, 1622, 1867, 1896, 2187, 2451, 3508
BtsIMutI CAGTG 6 cut(s) 1902, 2024, 2047, 2162, 2377, 2390
BveI ACCTGC 1 cut(s) 2467
CaiI CAGNNNCTG 1 cut(s) 2153
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
ClaI ATCGAT 1 cut(s) 3028
CseI GACGC 2 cut(s) 1778, 2308
CspCI CAANNNNNGTGG 2 cut(s) 792, 827
DraI TTTAAA 1 cut(s) 2332
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 736
Eam1104I CTCTTC 2 cut(s) 3048, 3492
EarI CTCTTC 2 cut(s) 3048, 3492
EciI GGCGGA 1 cut(s) 1098
Eco130I CCWWGG 5 cut(s) 292, 921, 1582, 2191, 2955
Eco47I GGWCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
Eco57I CTGAAG 4 cut(s) 2048, 2054, 2303, 3516
Eco72I CACGTG 2 cut(s) 977, 2921
Eco81I CCTNAGG 2 cut(s) 1751, 2831
Eco88I CYCGRG 1 cut(s) 1614
EcoNI CCTNNNNNAGG 1 cut(s) 2474
EcoO109I RGGNCCY 1 cut(s) 2479
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 5 cut(s) 381, 949, 1158, 2113, 2934
EcoT14I CCWWGG 5 cut(s) 292, 921, 1582, 2191, 2955
ErhI CCWWGG 5 cut(s) 292, 921, 1582, 2191, 2955
FalI AAGNNNNNCTT 4 cut(s) 593, 625, 863, 895
FaqI GGGAC 2 cut(s) 1582, 1781
FauNDI CATATG 1 cut(s) 1599
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 4 cut(s) 769, 2638, 3390, 3446
Fnu4HI GCNGC 6 cut(s) 105, 1620, 1747, 2670, 2926, 3328
FokI GGATG 8 cut(s) 812, 1400, 1609, 1874, 1903, 2174, 2438, 3515
Fsp4HI GCNGC 6 cut(s) 105, 1620, 1747, 2670, 2926, 3328
FspBI CTAG 8 cut(s) 174, 936, 992, 1470, 1895, 2183, 2547, 2657
GluI GCNGC 6 cut(s) 105, 1620, 1747, 2670, 2926, 3328
GsuI CTGGAG 2 cut(s) 1868, 2633
HaeIII GGCC 3 cut(s) 738, 815, 2469
HapII CCGG 4 cut(s) 520, 2000, 3311, 3452
HgaI GACGC 2 cut(s) 1778, 2308
Hin1I GRCGYC 1 cut(s) 2300
HincII GTYRAC 2 cut(s) 2415, 3564
HindII GTYRAC 2 cut(s) 2415, 3564
HindIII AAGCTT 3 cut(s) 55, 1952, 2130
HpaI GTTAAC 1 cut(s) 2415
HpaII CCGG 4 cut(s) 520, 2000, 3311, 3452
HphI GGTGA 5 cut(s) 15, 173, 1235, 2815, 2939
HpyAV CCTTC 7 cut(s) 191, 320, 1373, 1377, 2031, 2108, 2960
HpyCH4III ACNGT 6 cut(s) 836, 1541, 2051, 2363, 2372, 2636
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 183, 479, 932, 1124, 1163, 1960, 2125, 3350
Hsp92I GRCGYC 1 cut(s) 2300
KpnI GGTACC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 2415
LmnI GCTCC 6 cut(s) 907, 954, 1187, 1243, 1960, 1990
Lsp1109I GCAGC 6 cut(s) 116, 1631, 1758, 2656, 2912, 3339
MaeI CTAG 8 cut(s) 174, 936, 992, 1470, 1895, 2183, 2547, 2657
MfeI CAATTG 1 cut(s) 2007
MflI RGATCY 4 cut(s) 148, 1528, 1907, 1933
MhlI GDGCHC 1 cut(s) 3099
MlyI GAGTC 5 cut(s) 1040, 1709, 1819, 2188, 3220
MmeI TCCRAC 2 cut(s) 613, 1968
MroXI GAANNNNTTC 1 cut(s) 2943
MslI CAYNNNNRTG 3 cut(s) 1602, 1689, 2531
MspA1I CMGCKG 3 cut(s) 2502, 2669, 2790
MspI CCGG 4 cut(s) 520, 2000, 3311, 3452
MspR9I CCNGG 7 cut(s) 383, 951, 1160, 2000, 2115, 2936, 3453
MunI CAATTG 1 cut(s) 2007
Mva1269I GAATGC 1 cut(s) 3344
MvaI CCWGG 5 cut(s) 383, 951, 1160, 2115, 2936
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 9 cut(s) 113, 183, 479, 932, 1124, 1163, 1960, 2125, 3350
NciI CCSGG 2 cut(s) 2000, 3453
NcoI CCATGG 1 cut(s) 2191
NdeI CATATG 1 cut(s) 1599
NheI GCTAGC 1 cut(s) 935
NlaIV GGNNCC 7 cut(s) 380, 387, 865, 956, 1530, 2267, 3060
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 5 cut(s) 977, 1006, 1900, 2214, 2803
NspI RCATGY 5 cut(s) 920, 1326, 2520, 3164, 3364
PaeI GCATGC 1 cut(s) 3164
PasI CCCWGGG 1 cut(s) 2114
PciI ACATGT 1 cut(s) 3360
PctI GAATGC 1 cut(s) 3344
PdmI GAANNNNTTC 1 cut(s) 2943
PfoI TCCNGGA 1 cut(s) 1998
PkrI GCNGC 6 cut(s) 106, 1621, 1748, 2671, 2927, 3329
PleI GAGTC 5 cut(s) 1040, 1708, 1818, 2187, 3219
PmaCI CACGTG 2 cut(s) 977, 2921
PmlI CACGTG 2 cut(s) 977, 2921
PpsI GAGTC 5 cut(s) 1040, 1708, 1818, 2187, 3219
Ppu21I YACGTR 3 cut(s) 77, 977, 2921
PpuMI RGGWCCY 1 cut(s) 2479
PscI ACATGT 1 cut(s) 3360
PshBI ATTAAT 1 cut(s) 272
PsiI TTATAA 1 cut(s) 968
Psp1406I AACGTT 1 cut(s) 1111
Psp5II RGGWCCY 1 cut(s) 2479
Psp6I CCWGG 5 cut(s) 381, 949, 1158, 2113, 2934
PspCI CACGTG 2 cut(s) 977, 2921
PspGI CCWGG 5 cut(s) 381, 949, 1158, 2113, 2934
PspN4I GGNNCC 7 cut(s) 380, 387, 865, 956, 1530, 2267, 3060
PspPI GGNCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
PspPPI RGGWCCY 1 cut(s) 2479
PstI CTGCAG 1 cut(s) 1004
PstNI CAGNNNCTG 1 cut(s) 2153
PsuI RGATCY 4 cut(s) 148, 1528, 1907, 1933
PvuII CAGCTG 1 cut(s) 2669
RseI CAYNNNNRTG 3 cut(s) 1602, 1689, 2531
SatI GCNGC 6 cut(s) 105, 1620, 1747, 2670, 2926, 3328
Sau96I GGNCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
ScaI AGTACT 2 cut(s) 3319, 3486
SchI GAGTC 5 cut(s) 1040, 1709, 1819, 2188, 3220
ScrFI CCNGG 7 cut(s) 383, 951, 1160, 2000, 2115, 2936, 3453
SduI GDGCHC 1 cut(s) 3099
SfcI CTRYAG 3 cut(s) 1000, 1197, 2154
SinI GGWCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
SmiI ATTTAAAT 1 cut(s) 2332
SmiMI CAYNNNNRTG 3 cut(s) 1602, 1689, 2531
SmlI CTYRAG 8 cut(s) 152, 514, 869, 1140, 1955, 2873, 3287, 3410
SmoI CTYRAG 8 cut(s) 152, 514, 869, 1140, 1955, 2873, 3287, 3410
SphI GCATGC 1 cut(s) 3164
SsiI CCGC 8 cut(s) 184, 398, 473, 1083, 2502, 2695, 2790, 3528
SspI AATATT 2 cut(s) 1069, 3128
SspMI CTAG 8 cut(s) 174, 936, 992, 1470, 1895, 2183, 2547, 2657
StyD4I CCNGG 7 cut(s) 381, 949, 1158, 1998, 2113, 2934, 3451
StyI CCWWGG 5 cut(s) 292, 921, 1582, 2191, 2955
SwaI ATTTAAAT 1 cut(s) 2332
TaaI ACNGT 6 cut(s) 836, 1541, 2051, 2363, 2372, 2636
TaqI TCGA 7 cut(s) 1123, 1507, 2340, 3028, 3108, 3478, 3508
TaqII GACCGA 1 cut(s) 840
TatI WGTACW 6 cut(s) 285, 800, 1497, 2290, 3317, 3484
TscAI CASTG 6 cut(s) 1909, 2031, 2054, 2169, 2377, 2390
TseFI GTSAC 5 cut(s) 977, 1006, 1900, 2214, 2803
TseI GCWGC 6 cut(s) 104, 1619, 1746, 2669, 2925, 3327
Tsp45I GTSAC 5 cut(s) 977, 1006, 1900, 2214, 2803
TspGWI ACGGA 4 cut(s) 50, 1172, 2340, 3486
TspRI CASTG 6 cut(s) 1909, 2031, 2054, 2169, 2377, 2390
VpaK11BI GGWCC 6 cut(s) 386, 947, 1288, 2265, 2479, 2494
VspI ATTAAT 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 2474
XapI RAATTY 5 cut(s) 392, 1518, 1673, 2203, 2276
XceI RCATGY 5 cut(s) 920, 1326, 2520, 3164, 3364
XmiI GTMKAC 4 cut(s) 769, 2638, 3390, 3446
XmnI GAANNNNTTC 1 cut(s) 2943
XspI CTAG 8 cut(s) 174, 936, 992, 1470, 1895, 2183, 2547, 2657
ZrmI AGTACT 2 cut(s) 3319, 3486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.