Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016657

Physical Location & Seq

Genomic Coordinates Reverse (-)

27871174 .. 27873332

Gene Structure 2159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGCCTCAAAACTCAAAACCTTCATCAATCTCCGTGACTACCCAATAACCCTATTCAACCAGATTCGATCACTATCCTCACGAATTCTCACACCTATCAATCAATCTCACTACAGGAAACGAATTTTACTCGCGAATCTCCTTCAGAGGTATGGTTTCCCTCCTTCTTCTCTTCAGCACTTCCTCTCAAGAAACAATCACCTATTGAATTCGGACTTAGTAGAAACCGAAATTTCTCTCGGCATCCTATTGTCATTGAAAATCCCTCAGAAATCACTCGTTTCGTTGATTTCCGATTGCCCTAATGTTCTGCGATCAGAGTTTCTGAGGAAATGGAGAGTTCCTCTGTCTAATTGCGGTAAACACGGTGTCGTCTCATCTTCTGCGATTAAGAGCGTCCTTGAACATTCTAGTAGAATTGGGATTGGTCCAGATAAGTTTAATGAGTGCGTAAGGGTTTTGAAGAGTTTAGGGTTTTGTGATAGTACTGTGAGTAGGATTTTAAGTTCATTCCCTGGTGTTCTTTTAGTGAATGAGATTGAAATTCGTAGGAAGATTGAGTTTTTAGTTGGAATTGGCATTGCTCGAGATAACATTGAGAGGTTCTTTCACGTTTTTCCTGAAGTTCTAGGGATTGGTACTGAGACTAGACTTAAGCCATTGCTTGATGAGTTCATGAAGATGGGGTTTAGTAAGGATGATGTAAAGAAAGAGATTGCTAGAGAACCGAGAGTTCTTGGTTTGGAGTTAGGTGAGCTTCCGCGGTGTTTGGAGTTGATCAACACATTGAAATGCCGGGAAGTGATTAGAGTTAGTATAATCAGCGAAGGAGCATTTCGTGCTGGGTTTGAAGTGAAGCTCAGAGTTGATTGTTTATGCAAATACGGGTTGATTCGTAGAGATGCATTCAAGGTTGTATGGAAAGAGCCGAGGGTGATCTTATATGAGATAGAGGATATAGAGAAGAAGATTGAGTTTTTAACTAACAGAATGGGATTTCATATCAATTGTTTAGCTGATGTACCGGAGTATCTAGGGGTTAATCTTCAGAAGCAGATCGTTCCACGGTACAATGTCATTGATTACTTGAAACTAAAAGGTGGGCTTGGCTGTGATATTGGATTGAAAGGTTTGATCAAACCAAGCATGAAAAGATTTTATAATTTGTACGTGATGCCATACCCAGAGTGTGAAAGAATCTTTGGAAAGAGAAAAGAGAATGTCCGAGTGAATAAACGACATCCCGCAGGGCTTTGGAAGCTTATGAAGCCGCCTAGCAATCTAACAACAAAAGAAGATGTGCAGAACATGAAGTCCTTTATAGAGTCACTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

445

Amino Acids

51.03

Weight (kDa)

9.63

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	142 - 253	1.8e-17	mTERF
mTERF	PF02536	287 - 366	5.1e-13	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74120
fragaria_vesca	FvH4_5g13630
malus_domestica	MD14G1214100.v1.1
prunus_persica	Prupe.5G207400_v2.0.a1
pyrus_communis	pycom14g17750
rosa_chinensis	RchiOBHm_Chr7g0183331
rosa_laevigata	RLG00000005056
rosa_multiflora	Rmu_sc0029438.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270570
rosa_samantha	Rh7AG058200 Rh7BG058000 Rh7CG059600 Rh7DG057900
rosa_wichuraiana	Rw7G004780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1161
AccII	CGCG	2 cut(s)	134, 763
AciI	CCGC	5 cut(s)	357, 761, 763, 1245, 1271
AcsI	RAATTY	5 cut(s)	84, 123, 208, 231, 543
AcuI	CTGAAG	4 cut(s)	128, 158, 642, 1031
AfaI	GTAC	5 cut(s)	487, 640, 1023, 1070, 1169
AflII	CTTAAG	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	1185, 1217
AloI	GAACNNNNNNTCC	4 cut(s)	490, 522, 1298, 1330
AluBI	AGCT	4 cut(s)	757, 859, 1016, 1261
AluI	AGCT	4 cut(s)	757, 859, 1016, 1261
Alw26I	GTCTC	2 cut(s)	379, 638
Ama87I	CYCGRG	1 cut(s)	585
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	5 cut(s)	84, 123, 208, 231, 543
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	797
AsuHPI	GGTGA	3 cut(s)	191, 764, 946
AvaI	CYCGRG	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	428
BaeI	ACNNNNGTAYC	2 cut(s)	1013, 1046
BccI	CCATC	1 cut(s)	676
BciT130I	CCWGG	1 cut(s)	516
BclI	TGATCA	2 cut(s)	777, 1134
BcnI	CCSGG	1 cut(s)	797
BcoDI	GTCTC	2 cut(s)	379, 638
BfaI	CTAG	6 cut(s)	411, 629, 648, 720, 1034, 1275
BfmI	CTRYAG	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	653
BisI	GCNGC	1 cut(s)	1271
BlsI	GCNGC	1 cut(s)	1272
BmcAI	AGTACT	1 cut(s)	487
Bme1390I	CCNGG	2 cut(s)	516, 797
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	428
BmrFI	CCNGG	2 cut(s)	516, 797
BmsI	GCATC	3 cut(s)	252, 892, 1164
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	797
BsaAI	YACGTR	1 cut(s)	1171
BsaBI	GATNNNNATC	1 cut(s)	73
BsaJI	CCNNGG	4 cut(s)	514, 761, 929, 1064
BsaWI	WCCGGW	1 cut(s)	1024
Bse3DI	GCAATG	2 cut(s)	579, 659
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	516
BseDI	CCNNGG	4 cut(s)	514, 761, 929, 1064
BseGI	GGATG	3 cut(s)	243, 703, 1240
BseJI	GATNNNNATC	1 cut(s)	73
BseMI	GCAATG	2 cut(s)	579, 659
BseMII	CTCAG	4 cut(s)	281, 317, 633, 874
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	1322
Bsh1236I	CGCG	2 cut(s)	134, 763
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	796, 1025
BsmAI	GTCTC	2 cut(s)	379, 638
BsmBI	CGTCTC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	585
Bsp143I	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
Bsp68I	TCGCGA	1 cut(s)	134
BspACI	CCGC	5 cut(s)	357, 761, 763, 1245, 1271
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	280, 318, 634, 873
BspFNI	CGCG	2 cut(s)	134, 763
BspHI	TCATGA	1 cut(s)	675
BspTI	CTTAAG	1 cut(s)	653
BsrDI	GCAATG	2 cut(s)	579, 659
BssECI	CCNNGG	4 cut(s)	514, 761, 929, 1064
BssMI	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	368, 490, 1068
Bst6I	CTCTTC	2 cut(s)	177, 458
BstAFI	CTTAAG	1 cut(s)	653
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstBAI	YACGTR	1 cut(s)	1171
BstDEI	CTNAG	6 cut(s)	217, 267, 326, 642, 860, 1335
BstDSI	CCRYGG	2 cut(s)	761, 1064
BstF5I	GGATG	3 cut(s)	243, 703, 1240
BstFNI	CGCG	2 cut(s)	134, 763
BstKTI	GATC	6 cut(s)	71, 317, 780, 939, 1059, 1137
BstMAI	GTCTC	2 cut(s)	379, 638
BstMBI	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
BstMWI	GCNNNNNNNGC	3 cut(s)	839, 1258, 1267
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	514, 795
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	2 cut(s)	134, 763
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	2 cut(s)	761, 1064
BtsCI	GGATG	3 cut(s)	243, 703, 1240
BtuMI	TCGCGA	1 cut(s)	134
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	428
Cfr42I	CCGCGG	1 cut(s)	764
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	5 cut(s)	486, 639, 1022, 1069, 1168
CviAII	CATG	3 cut(s)	676, 1147, 1309
CviQI	GTAC	5 cut(s)	486, 639, 1022, 1069, 1168
DdeI	CTNAG	6 cut(s)	217, 267, 326, 642, 860, 1335
DpnI	GATC	6 cut(s)	70, 316, 779, 938, 1058, 1136
DpnII	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
Eam1104I	CTCTTC	2 cut(s)	177, 458
EarI	CTCTTC	2 cut(s)	177, 458
Eco47I	GGWCC	1 cut(s)	428
Eco57I	CTGAAG	4 cut(s)	128, 158, 642, 1031
Eco88I	CYCGRG	1 cut(s)	585
EcoRI	GAATTC	2 cut(s)	84, 208
EcoRII	CCWGG	1 cut(s)	514
EcoT22I	ATGCAT	1 cut(s)	907
Esp3I	CGTCTC	1 cut(s)	379
FaeI	CATG	3 cut(s)	679, 1150, 1312
FalI	AAGNNNNNCTT	2 cut(s)	1089, 1121
FatI	CATG	3 cut(s)	675, 1146, 1308
FauI	CCCGC	1 cut(s)	1252
FbaI	TGATCA	2 cut(s)	777, 1134
Fnu4HI	GCNGC	1 cut(s)	1271
FokI	GGATG	3 cut(s)	230, 710, 1227
Fsp4HI	GCNGC	1 cut(s)	1271
FspBI	CTAG	6 cut(s)	411, 629, 648, 720, 1034, 1275
GluI	GCNGC	1 cut(s)	1271
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	796, 1025
HgaI	GACGC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	679, 1150, 1312
HindIII	AAGCTT	1 cut(s)	1259
HinfI	GANTC	5 cut(s)	64, 136, 892, 1197, 1325
HpaII	CCGG	2 cut(s)	796, 1025
HphI	GGTGA	3 cut(s)	191, 764, 946
Hpy166II	GTNNAC	1 cut(s)	362
Hpy188I	TCNGA	9 cut(s)	147, 214, 270, 295, 319, 327, 863, 1050, 1226
Hpy188III	TCNNGA	7 cut(s)	81, 133, 189, 431, 587, 620, 676
Hpy8I	GTNNAC	1 cut(s)	362
HpyAV	CCTTC	4 cut(s)	31, 152, 174, 821
HpyCH4III	ACNGT	3 cut(s)	368, 490, 1068
HpyCH4IV	ACGT	2 cut(s)	612, 1170
HpyCH4V	TGCA	3 cut(s)	879, 905, 1303
HpyF10VI	GCNNNNNNNGC	3 cut(s)	839, 1258, 1267
HpyF3I	CTNAG	6 cut(s)	217, 267, 326, 642, 860, 1335
HpySE526I	ACGT	2 cut(s)	612, 1170
Hsp92II	CATG	3 cut(s)	679, 1150, 1312
Ksp22I	TGATCA	2 cut(s)	777, 1134
KspI	CCGCGG	1 cut(s)	764
Kzo9I	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
LmnI	GCTCC	1 cut(s)	830
LweI	GCATC	3 cut(s)	252, 892, 1164
MaeI	CTAG	6 cut(s)	411, 629, 648, 720, 1034, 1275
MaeII	ACGT	2 cut(s)	612, 1170
MaeIII	GTNAC	2 cut(s)	35, 1326
MalI	GATC	6 cut(s)	70, 316, 779, 938, 1058, 1136
MboI	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
MfeI	CAATTG	1 cut(s)	1006
MlyI	GAGTC	1 cut(s)	1334
MmeI	TCCRAC	1 cut(s)	550
Mph1103I	ATGCAT	1 cut(s)	907
MseI	TTAA	6 cut(s)	390, 441, 503, 654, 980, 1041
MslI	CAYNNNNRTG	2 cut(s)	680, 790
MspA1I	CMGCKG	1 cut(s)	763
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	2 cut(s)	796, 1025
MspR9I	CCNGG	2 cut(s)	516, 797
MunI	CAATTG	1 cut(s)	1006
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	1 cut(s)	516
MvnI	CGCG	2 cut(s)	134, 763
MwoI	GCNNNNNNNGC	3 cut(s)	839, 1258, 1267
NciI	CCSGG	1 cut(s)	797
NdeII	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
NlaIII	CATG	3 cut(s)	679, 1150, 1312
NmeAIII	GCCGAG	2 cut(s)	219, 954
NmuCI	GTSAC	2 cut(s)	35, 1326
NruI	TCGCGA	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	585
PagI	TCATGA	1 cut(s)	675
PctI	GAATGC	1 cut(s)	905
PfeI	GAWTC	4 cut(s)	64, 136, 892, 1197
PkrI	GCNGC	1 cut(s)	1272
PleI	GAGTC	1 cut(s)	1333
PpsI	GAGTC	1 cut(s)	1333
Ppu21I	YACGTR	1 cut(s)	1171
PsiI	TTATAA	1 cut(s)	1161
Psp6I	CCWGG	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	514
PspPI	GGNCC	1 cut(s)	428
RruI	TCGCGA	1 cut(s)	134
RsaI	GTAC	5 cut(s)	487, 640, 1023, 1070, 1169
RsaNI	GTAC	5 cut(s)	486, 639, 1022, 1069, 1168
RseI	CAYNNNNRTG	2 cut(s)	680, 790
SacII	CCGCGG	1 cut(s)	764
SaqAI	TTAA	6 cut(s)	390, 441, 503, 654, 980, 1041
SatI	GCNGC	1 cut(s)	1271
Sau3AI	GATC	6 cut(s)	68, 314, 777, 936, 1056, 1134
Sau96I	GGNCC	1 cut(s)	428
ScaI	AGTACT	1 cut(s)	487
SchI	GAGTC	1 cut(s)	1334
ScrFI	CCNGG	2 cut(s)	516, 797
SfaNI	GCATC	3 cut(s)	252, 892, 1164
SfcI	CTRYAG	1 cut(s)	112
Sfr274I	CTCGAG	1 cut(s)	585
Sfr303I	CCGCGG	1 cut(s)	764
SgrBI	CCGCGG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	428
SlaI	CTCGAG	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	680, 790
SmlI	CTYRAG	3 cut(s)	187, 585, 653
SmoI	CTYRAG	3 cut(s)	187, 585, 653
SsiI	CCGC	5 cut(s)	357, 761, 763, 1245, 1271
SspMI	CTAG	6 cut(s)	411, 629, 648, 720, 1034, 1275
StyD4I	CCNGG	2 cut(s)	514, 795
TaaI	ACNGT	3 cut(s)	368, 490, 1068
TaiI	ACGT	2 cut(s)	615, 1173
TaqI	TCGA	2 cut(s)	67, 586
TatI	WGTACW	1 cut(s)	485
TauI	GCSGC	1 cut(s)	1273
TfiI	GAWTC	4 cut(s)	64, 136, 892, 1197
Tru1I	TTAA	6 cut(s)	390, 441, 503, 654, 980, 1041
Tru9I	TTAA	6 cut(s)	390, 441, 503, 654, 980, 1041
TseFI	GTSAC	2 cut(s)	35, 1326
Tsp45I	GTSAC	2 cut(s)	35, 1326
TspDTI	ATGAA	8 cut(s)	13, 498, 664, 692, 989, 1163, 1280, 1325
TspGWI	ACGGA	1 cut(s)	23
Vha464I	CTTAAG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	5 cut(s)	84, 123, 208, 231, 543
XhoI	CTCGAG	1 cut(s)	585
XspI	CTAG	6 cut(s)	411, 629, 648, 720, 1034, 1275
ZrmI	AGTACT	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.