Rh7DG057900
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
4432461 .. 4433807
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG057900.1

Sequence Viewer

Length: 1347 bp
ATGGGTATGAGGGTTCTAAACAGAACCCTTCTCACCCGCTTCACATTCACTTCAACCCCCAAACAAAACCCATCTCTCACAAACCTAAAGTTCCAATCTTTTTCATCAAATCCACTAAACCCCAGATTTTCAATACAAATTTCCAATCTACTCCAAAGGTACGGCTTTCCATCTTCCATTGTTCACAATTTCATATCAAAGAATCAATATTTACTCAATTCAGATTTGCATGACTTAGACAAGTCTCTGGTTATTCTTTCGTCCTTCAAAATTGATCAGAGTTCCCTTGTTTCATTGATATGTGATTGCCCTGGGGTTTTGGATTTTGAATTTCTTAAGAAATGGGAACTGGGTTTCTCAAAATTGGGGCTTTTGGGTGCCTCCCCGTTGATGATTAAGAGTGTTTTGGAGCAATCTAAGAGGTTTCAGATTGACCCAGATGGTGTTTTTAGGAGTGTGGAGGCTTTGAGGGGTTTAGGGTTTAAGGATGGTACTGTCTGTAGGGTTTTAGAGGGGTTTCCAGGAGTGGTTTTGATGAATGAGAAGGAGATAGATAAGAGAATTGAGTTCTTGGTGGGATTTGGGATTCCGAGGGACGGAATTGATCGCGTTCTTTGTTGTTTTCCAGGGGTTTTAGGATTTGGGGTTGAAGATAGATTAAAGCCATTGCTCTGTGAGTTCAAAGACTTTGGCTTTGGTAAGGATGTTATTAGGAGAGAGATTGTTAAAGAGCCAAGAGTTCTTGGCATGGAATTCGGTGAGTTTTCGTGGTGTTTGGAATGGTTGAGGACTTTGAAATGTAGGGAGCCTATCAAGGAGAAGATTTTCAGCAATGGAGAATTTCGAGCTGGGTTTGAAGTGAAATTGAGAGTTGACTGCTTGTGCAAACATGGGTTGATCCGAAGAGAGGCTTTCGAAGTGCTGTGGAAGGAGCCAAGGTCAATCATATATAAGGTGGAGGACATTGAGAGGAAGATTGAGTTTTTAACACATGAGATGAAATTCAATATCCGTTGTTTGGTTGAAGTTCCGGAGTACTTGGGTGTAAATTTTGAGAAGCAAATCGTTCCTCGGTTCACTGTGATAGAGCATTTGCGATCAAAAGGAGGGCTTGGTTGTGAGGTGGGGTTAAAGGGTCTGATCAAGCCTAGCAGGCTTAGATTCTACAACCTGTATGTCAAGCCATATCCGGATTGTGAAACAATATTTGGAAGACTTTCAGGAGATGGTAAGGTTCGAAACCAACATCCTGCTGGACTTTGGAAGCTTTTTAAGCCACCAAGTTATCCAGAATCGAAAGATGATGTGAAGAACACAAAGTCATTTATGGAATCACTGGCTCACTGA

Protein Analysis

448

Amino Acids

51.47

Weight (kDa)

9.08

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 125 - 253 3.9e-10 mTERF
mTERF PF02536 228 - 369 1.9e-14 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016657)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74120
fragaria_vesca FvH4_5g13630
malus_domestica MD14G1214100.v1.1
prunus_persica Prupe.5G207400_v2.0.a1
pyrus_communis pycom14g17750
rosa_chinensis RchiOBHm_Chr7g0183331
rosa_laevigata RLG00000005056
rosa_multiflora Rmu_sc0029438.1_g000001
rosa_roxburghii Rroxscaffold_3G00270570
rosa_samantha Rh7AG058200 Rh7BG058000 Rh7CG059600 Rh7DG057900
rosa_wichuraiana Rw7G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 1 cut(s) 609
AccIII TCCGGA 2 cut(s) 1030, 1189
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 892
AcsI RAATTY 6 cut(s) 138, 329, 752, 839, 1001, 1048
AfaI GTAC 3 cut(s) 161, 493, 1037
AfiI CCNNNNNNNGG 3 cut(s) 596, 907, 1018
AflII CTTAAG 1 cut(s) 335
AjnI CCWGG 3 cut(s) 310, 520, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 1191, 1223
AluBI AGCT 2 cut(s) 848, 1267
AluI AGCT 2 cut(s) 848, 1267
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 892
Aor13HI TCCGGA 2 cut(s) 1030, 1189
ApoI RAATTY 6 cut(s) 138, 329, 752, 839, 1001, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 677, 709
Asp700I GAANNNNTTC 2 cut(s) 824, 1216
AsuHPI GGTGA 2 cut(s) 25, 770
AsuII TTCGAA 2 cut(s) 915, 1237
BanI GGYRCC 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 1219
BccI CCATC 5 cut(s) 79, 178, 434, 482, 1220
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 736, 770
BciT130I CCWGG 3 cut(s) 312, 522, 627
BclI TGATCA 2 cut(s) 274, 1140
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 1149
BfmI CTRYAG 1 cut(s) 499
BfrI CTTAAG 1 cut(s) 335
BglI GCCNNNNNGGC 1 cut(s) 1153
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 3 cut(s) 312, 522, 627
BmiI GGNNCC 3 cut(s) 379, 807, 933
BmrFI CCNGG 3 cut(s) 312, 522, 627
BmrI ACTGGG 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 1219
Bpu14I TTCGAA 2 cut(s) 915, 1237
BsaJI CCNNGG 6 cut(s) 310, 311, 590, 626, 935, 1070
BsaWI WCCGGW 2 cut(s) 1030, 1189
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 907, 1018
Bse1I ACTGG 2 cut(s) 354, 1341
Bse3DI GCAATG 2 cut(s) 665, 838
BseAI TCCGGA 2 cut(s) 1030, 1189
BseBI CCWGG 3 cut(s) 312, 522, 627
BseDI CCNNGG 6 cut(s) 310, 311, 590, 626, 935, 1070
BseGI GGATG 3 cut(s) 493, 709, 1246
BseLI CCNNNNNNNGG 3 cut(s) 596, 907, 1018
BseMI GCAATG 2 cut(s) 665, 838
BseNI ACTGG 2 cut(s) 354, 1341
BseYI CCCAGC 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 609
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 2 cut(s) 1031, 1190
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 3 cut(s) 596, 907, 1018
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 608
Bsp119I TTCGAA 2 cut(s) 915, 1237
Bsp13I TCCGGA 2 cut(s) 1030, 1189
Bsp143I GATC 5 cut(s) 274, 604, 897, 1097, 1140
BspACI CCGC 1 cut(s) 37
BspEI TCCGGA 2 cut(s) 1030, 1189
BspFNI CGCG 1 cut(s) 609
BspLI GGNNCC 3 cut(s) 379, 807, 933
BspPI GGATC 1 cut(s) 892
BspT104I TTCGAA 2 cut(s) 915, 1237
BspT107I GGYRCC 1 cut(s) 377
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 665, 838
BsrI ACTGG 2 cut(s) 354, 1341
BssECI CCNNGG 6 cut(s) 310, 311, 590, 626, 935, 1070
BssMI GATC 5 cut(s) 274, 604, 897, 1097, 1140
BssT1I CCWWGG 1 cut(s) 935
Bst2UI CCWGG 3 cut(s) 312, 522, 627
Bst4CI ACNGT 2 cut(s) 496, 1081
Bst6I CTCTTC 1 cut(s) 898
BstAFI CTTAAG 1 cut(s) 335
BstBI TTCGAA 2 cut(s) 915, 1237
BstC8I GCNNGC 1 cut(s) 1154
BstDEI CTNAG 3 cut(s) 235, 417, 1157
BstF5I GGATG 3 cut(s) 493, 709, 1246
BstFNI CGCG 1 cut(s) 609
BstKTI GATC 5 cut(s) 277, 607, 900, 1100, 1143
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 5 cut(s) 274, 604, 897, 1097, 1140
BstMWI GCNNNNNNNGC 2 cut(s) 1153, 1273
BstNI CCWGG 3 cut(s) 312, 522, 627
BstSCI CCNGG 3 cut(s) 310, 520, 625
BstSFI CTRYAG 1 cut(s) 499
BstUI CGCG 1 cut(s) 609
BstV2I GAAGAC 1 cut(s) 1219
BtsCI GGATG 3 cut(s) 493, 709, 1246
BtsIMutI CAGTG 3 cut(s) 1077, 1334, 1342
Cac8I GCNNGC 1 cut(s) 1154
Csp6I GTAC 3 cut(s) 160, 492, 1036
CviAII CATG 4 cut(s) 230, 748, 890, 992
CviQI GTAC 3 cut(s) 160, 492, 1036
DdeI CTNAG 3 cut(s) 235, 417, 1157
DpnI GATC 5 cut(s) 276, 606, 899, 1099, 1142
DpnII GATC 5 cut(s) 274, 604, 897, 1097, 1140
Eam1104I CTCTTC 1 cut(s) 898
EarI CTCTTC 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 3 cut(s) 310, 520, 625
EcoT14I CCWWGG 1 cut(s) 935
ErhI CCWWGG 1 cut(s) 935
FaeI CATG 4 cut(s) 233, 751, 893, 995
FalI AAGNNNNNCTT 4 cut(s) 895, 927, 1095, 1127
FaqI GGGAC 1 cut(s) 608
FatI CATG 4 cut(s) 229, 747, 889, 991
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 2 cut(s) 274, 1140
FokI GGATG 3 cut(s) 500, 716, 1233
FspBI CTAG 1 cut(s) 1149
GsaI CCCAGC 1 cut(s) 852
HapII CCGG 2 cut(s) 1031, 1190
Hin1II CATG 4 cut(s) 233, 751, 893, 995
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HindIII AAGCTT 1 cut(s) 1265
HinfI GANTC 5 cut(s) 202, 586, 1161, 1292, 1331
HpaII CCGG 2 cut(s) 1031, 1190
HphI GGTGA 2 cut(s) 25, 770
Hpy166II GTNNAC 3 cut(s) 184, 874, 1077
Hpy188I TCNGA 6 cut(s) 223, 279, 429, 591, 902, 1140
Hpy188III TCNNGA 4 cut(s) 1031, 1190, 1221, 1289
Hpy8I GTNNAC 3 cut(s) 184, 874, 1077
HpyAV CCTTC 4 cut(s) 38, 274, 538, 922
HpyCH4III ACNGT 2 cut(s) 496, 1081
HpyCH4V TGCA 2 cut(s) 229, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 1153, 1273
HpyF3I CTNAG 3 cut(s) 235, 417, 1157
Hsp92II CATG 4 cut(s) 233, 751, 893, 995
Kpn2I TCCGGA 2 cut(s) 1030, 1189
Ksp22I TGATCA 2 cut(s) 274, 1140
Kzo9I GATC 5 cut(s) 274, 604, 897, 1097, 1140
LmnI GCTCC 3 cut(s) 409, 805, 931
MaeI CTAG 1 cut(s) 1149
MalI GATC 5 cut(s) 276, 606, 899, 1099, 1142
MboI GATC 5 cut(s) 274, 604, 897, 1097, 1140
MboII GAAGA 7 cut(s) 165, 662, 832, 915, 985, 1224, 1321
MroI TCCGGA 2 cut(s) 1030, 1189
MroXI GAANNNNTTC 2 cut(s) 824, 1216
MseI TTAA 8 cut(s) 336, 396, 483, 659, 726, 986, 1130, 1272
MslI CAYNNNNRTG 1 cut(s) 298
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 1031, 1190
MspR9I CCNGG 3 cut(s) 312, 522, 627
MvaI CCWGG 3 cut(s) 312, 522, 627
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 2 cut(s) 1153, 1273
NdeII GATC 5 cut(s) 274, 604, 897, 1097, 1140
NlaIII CATG 4 cut(s) 233, 751, 893, 995
NlaIV GGNNCC 3 cut(s) 379, 807, 933
NspV TTCGAA 2 cut(s) 915, 1237
PasI CCCWGGG 1 cut(s) 311
PdmI GAANNNNTTC 2 cut(s) 824, 1216
PfeI GAWTC 5 cut(s) 202, 586, 1161, 1292, 1331
PfoI TCCNGGA 1 cut(s) 520
Psp6I CCWGG 3 cut(s) 310, 520, 625
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 3 cut(s) 310, 520, 625
PspN4I GGNNCC 3 cut(s) 379, 807, 933
RsaI GTAC 3 cut(s) 161, 493, 1037
RsaNI GTAC 3 cut(s) 160, 492, 1036
RseI CAYNNNNRTG 1 cut(s) 298
SaqAI TTAA 8 cut(s) 336, 396, 483, 659, 726, 986, 1130, 1272
Sau3AI GATC 5 cut(s) 274, 604, 897, 1097, 1140
ScaI AGTACT 1 cut(s) 1037
ScrFI CCNGG 3 cut(s) 312, 522, 627
SfcI CTRYAG 1 cut(s) 499
SfuI TTCGAA 2 cut(s) 915, 1237
SmiMI CAYNNNNRTG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SsiI CCGC 1 cut(s) 37
SspI AATATT 2 cut(s) 209, 1206
SspMI CTAG 1 cut(s) 1149
StyD4I CCNGG 3 cut(s) 310, 520, 625
StyI CCWWGG 1 cut(s) 935
TaaI ACNGT 2 cut(s) 496, 1081
TaqI TCGA 4 cut(s) 844, 915, 1237, 1295
TatI WGTACW 1 cut(s) 1035
TfiI GAWTC 5 cut(s) 202, 586, 1161, 1292, 1331
Tru1I TTAA 8 cut(s) 336, 396, 483, 659, 726, 986, 1130, 1272
Tru9I TTAA 8 cut(s) 336, 396, 483, 659, 726, 986, 1130, 1272
TscAI CASTG 2 cut(s) 1084, 1341
TspDTI ATGAA 5 cut(s) 93, 181, 282, 551, 1013
TspGWI ACGGA 2 cut(s) 612, 1001
TspRI CASTG 2 cut(s) 1084, 1341
Vha464I CTTAAG 1 cut(s) 335
XapI RAATTY 6 cut(s) 138, 329, 752, 839, 1001, 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 1250
XmnI GAANNNNTTC 2 cut(s) 824, 1216
XspI CTAG 1 cut(s) 1149
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.