Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0016657

Physical Location & Seq

Genomic Coordinates Reverse (-)

64719406 .. 64720752

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGATTTGCATGACTTAGACAAGTCTCTGGTTATTCTTTCGTCCTTCAATATTGATCAGAGTTCCCTTGTTTCATTGATATGTGATTGCCCTTGGGTTTTGGATTTTGAGTTTCTTAAGAAATGGGAACTGGGTTTCTCAAAATTGGGGCTTTTGGGTGCTTCCCTGTTGATGATTAAGAGTGTTTTGGAGCAATCTAAGAGGTTTCAGATTGACCCAGATGGTGTTTTTCGGAGTGTGGAGGCTTTGAGGGGTTTAGGGTTTAAGGATGGTACTGTCTGTAGGGTTTTAGAGGGGTTTCCAGGAGTGGTTTTGATGAATGAGAGGGAGATAGATAAGAGAATTGAGTTCTTAGTGGGATTTGGGATTCCGAGGGATGGAATTGATCGGGTTCTTTGTTGTTTTCCAGGGGTTTTAGGATTTGGGGTTGAAGATAGATTAAAGCCATTGCTCTGTGAGTTCAAAGACTTTGGCTTTGGTAAGGATGTTATTAGGAGAGAGATTGTTAAAGAGCCAAGAGTTCTTGGCATGGAATTCGGTGAGTTTTCGTGGTGTTTGGAATGGTTGAGGACTTTGAAATGTAGGGAGCCTATCAAGGAGAAGATTTTCAGTAATGGAGAATTTCGAGCTGGGTTTGAAGTGAAATTGAGAGTTGACTGCTTGTGCAAACATGGGTTGATCCGAAGAGAGGCTTTCGAAGTGTTGTGGAAGGAGCCAAGGTCAATCATATATAAGGTGGAGGACATTGAGAGGAAGATTGAGTTTTTAACACATGAGATGAAATTCAATATCCGTTGTTTGGTTGAAGTTCCGGAGTACTTGGGTGTGAATTTTGAGAAGCAAATCGTTCCTCGGTTCAATGTGATGGAGCATTTGCGATCAAAAGGTGGGCTTGGTTGTGAGGTGGGGTTAAAGGGTCTGATAAAGCCTAGCAGGCTTAGATTCTATAACCTGTATGTCAAGCCATATCCGGATTGTGAAACAATATTTGGAAGACTTTCAGGAGATGGTAAAGTTCAAAACCAACATCCTGCTGGACTATGGAAGCTTTTTAAGCCACCAAGTTATCCAGAATCGAAAGATGATGTGAAGAACACAAAGTCATTTATGGAATCACTGGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

376

Amino Acids

43.22

Weight (kDa)

8.14

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	8 - 179	2.8e-11	mTERF
mTERF	PF02536	109 - 296	1.9e-21	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74120
fragaria_vesca	FvH4_5g13630
malus_domestica	MD14G1214100.v1.1
prunus_persica	Prupe.5G207400_v2.0.a1
pyrus_communis	pycom14g17750
rosa_chinensis	RchiOBHm_Chr7g0183331
rosa_laevigata	RLG00000005056
rosa_multiflora	Rmu_sc0029438.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270570
rosa_samantha	Rh7AG058200 Rh7BG058000 Rh7CG059600 Rh7DG057900
rosa_wichuraiana	Rw7G004780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	811, 970
AclWI	GGATC	1 cut(s)	673
AcsI	RAATTY	4 cut(s)	533, 620, 782, 829
AfaI	GTAC	2 cut(s)	274, 818
AfiI	CCNNNNNNNGG	3 cut(s)	377, 688, 799
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	9 cut(s)	49, 431, 463, 577, 638, 787, 806, 859, 1019
AjnI	CCWGG	2 cut(s)	301, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	972, 1004
AluBI	AGCT	2 cut(s)	629, 1048
AluI	AGCT	2 cut(s)	629, 1048
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	673
Aor13HI	TCCGGA	2 cut(s)	811, 970
ApoI	RAATTY	4 cut(s)	533, 620, 782, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
Asp700I	GAANNNNTTC	2 cut(s)	605, 997
AsuHPI	GGTGA	1 cut(s)	551
AsuII	TTCGAA	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	1000
BccI	CCATC	5 cut(s)	215, 263, 371, 859, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BciT130I	CCWGG	2 cut(s)	303, 408
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	930
BfmI	CTRYAG	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	116
BglI	GCCNNNNNGGC	1 cut(s)	934
BmcAI	AGTACT	1 cut(s)	818
Bme1390I	CCNGG	2 cut(s)	303, 408
BmiI	GGNNCC	2 cut(s)	588, 714
BmrFI	CCNGG	2 cut(s)	303, 408
BmrI	ACTGGG	2 cut(s)	140, 1127
BmuI	ACTGGG	2 cut(s)	140, 1127
BpiI	GAAGAC	1 cut(s)	1000
Bpu14I	TTCGAA	1 cut(s)	696
BsaJI	CCNNGG	5 cut(s)	92, 371, 407, 716, 851
BsaWI	WCCGGW	2 cut(s)	811, 970
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 688, 799
Bse1I	ACTGG	2 cut(s)	135, 1122
Bse3DI	GCAATG	1 cut(s)	446
BseAI	TCCGGA	2 cut(s)	811, 970
BseBI	CCWGG	2 cut(s)	303, 408
BseDI	CCNNGG	5 cut(s)	92, 371, 407, 716, 851
BseGI	GGATG	4 cut(s)	274, 382, 490, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	377, 688, 799
BseMI	GCAATG	1 cut(s)	446
BseNI	ACTGG	2 cut(s)	135, 1122
BseYI	CCCAGC	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	812, 971
BslI	CCNNNNNNNGG	3 cut(s)	377, 688, 799
BsmAI	GTCTC	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	696
Bsp13I	TCCGGA	2 cut(s)	811, 970
Bsp143I	GATC	4 cut(s)	55, 385, 678, 878
BspEI	TCCGGA	2 cut(s)	811, 970
BspLI	GGNNCC	2 cut(s)	588, 714
BspPI	GGATC	1 cut(s)	673
BspT104I	TTCGAA	1 cut(s)	696
BspTI	CTTAAG	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	135, 1122
BssECI	CCNNGG	5 cut(s)	92, 371, 407, 716, 851
BssMI	GATC	4 cut(s)	55, 385, 678, 878
BssT1I	CCWWGG	2 cut(s)	92, 716
Bst2UI	CCWGG	2 cut(s)	303, 408
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	679
BstAFI	CTTAAG	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	935
BstDEI	CTNAG	4 cut(s)	16, 198, 352, 938
BstF5I	GGATG	4 cut(s)	274, 382, 490, 1027
BstKTI	GATC	4 cut(s)	58, 388, 681, 881
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	4 cut(s)	55, 385, 678, 878
BstMWI	GCNNNNNNNGC	2 cut(s)	934, 1054
BstNI	CCWGG	2 cut(s)	303, 408
BstSCI	CCNGG	2 cut(s)	301, 406
BstSFI	CTRYAG	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	1000
BtsCI	GGATG	4 cut(s)	274, 382, 490, 1027
BtsIMutI	CAGTG	2 cut(s)	1115, 1123
Cac8I	GCNNGC	1 cut(s)	935
Csp6I	GTAC	2 cut(s)	273, 817
CviAII	CATG	4 cut(s)	11, 529, 671, 773
CviQI	GTAC	2 cut(s)	273, 817
DdeI	CTNAG	4 cut(s)	16, 198, 352, 938
DpnI	GATC	4 cut(s)	57, 387, 680, 880
DpnII	GATC	4 cut(s)	55, 385, 678, 878
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	92, 716
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	301, 406
EcoT14I	CCWWGG	2 cut(s)	92, 716
ErhI	CCWWGG	2 cut(s)	92, 716
FaeI	CATG	4 cut(s)	14, 532, 674, 776
FalI	AAGNNNNNCTT	4 cut(s)	676, 708, 876, 908
FatI	CATG	4 cut(s)	10, 528, 670, 772
FbaI	TGATCA	1 cut(s)	55
FokI	GGATG	4 cut(s)	281, 389, 497, 1014
FspBI	CTAG	1 cut(s)	930
GsaI	CCCAGC	1 cut(s)	633
HapII	CCGG	2 cut(s)	812, 971
Hin1II	CATG	4 cut(s)	14, 532, 674, 776
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	4 cut(s)	367, 942, 1073, 1112
HpaII	CCGG	2 cut(s)	812, 971
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	6 cut(s)	60, 210, 234, 372, 683, 921
Hpy188III	TCNNGA	4 cut(s)	812, 971, 1002, 1070
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	2 cut(s)	55, 703
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	10, 666
HpyF10VI	GCNNNNNNNGC	2 cut(s)	934, 1054
HpyF3I	CTNAG	4 cut(s)	16, 198, 352, 938
Hsp92II	CATG	4 cut(s)	14, 532, 674, 776
Kpn2I	TCCGGA	2 cut(s)	811, 970
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	55, 385, 678, 878
LmnI	GCTCC	4 cut(s)	190, 586, 712, 868
MaeI	CTAG	1 cut(s)	930
MaeIII	GTNAC	1 cut(s)	1121
MalI	GATC	4 cut(s)	57, 387, 680, 880
MboI	GATC	4 cut(s)	55, 385, 678, 878
MboII	GAAGA	6 cut(s)	443, 613, 696, 766, 1005, 1102
MluCI	AATT	8 cut(s)	143, 342, 381, 533, 620, 644, 782, 829
MroI	TCCGGA	2 cut(s)	811, 970
MroXI	GAANNNNTTC	2 cut(s)	605, 997
MseI	TTAA	8 cut(s)	117, 177, 264, 440, 507, 767, 911, 1053
MslI	CAYNNNNRTG	1 cut(s)	79
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	2 cut(s)	812, 971
MspR9I	CCNGG	2 cut(s)	303, 408
MvaI	CCWGG	2 cut(s)	303, 408
MwoI	GCNNNNNNNGC	2 cut(s)	934, 1054
NdeII	GATC	4 cut(s)	55, 385, 678, 878
NlaIII	CATG	4 cut(s)	14, 532, 674, 776
NlaIV	GGNNCC	2 cut(s)	588, 714
NmuCI	GTSAC	1 cut(s)	1121
NspV	TTCGAA	1 cut(s)	696
PdmI	GAANNNNTTC	2 cut(s)	605, 997
PfeI	GAWTC	4 cut(s)	367, 942, 1073, 1112
PfoI	TCCNGGA	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	301, 406
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	2 cut(s)	301, 406
PspN4I	GGNNCC	2 cut(s)	588, 714
RsaI	GTAC	2 cut(s)	274, 818
RsaNI	GTAC	2 cut(s)	273, 817
RseI	CAYNNNNRTG	1 cut(s)	79
SaqAI	TTAA	8 cut(s)	117, 177, 264, 440, 507, 767, 911, 1053
Sau3AI	GATC	4 cut(s)	55, 385, 678, 878
ScaI	AGTACT	1 cut(s)	818
ScrFI	CCNGG	2 cut(s)	303, 408
SetI	ASST	8 cut(s)	206, 631, 722, 738, 889, 906, 954, 1050
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	696
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	8 cut(s)	143, 342, 381, 533, 620, 644, 782, 829
SspI	AATATT	2 cut(s)	52, 987
SspMI	CTAG	1 cut(s)	930
StyD4I	CCNGG	2 cut(s)	301, 406
StyI	CCWWGG	2 cut(s)	92, 716
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	625, 696, 1076
TasI	AATT	8 cut(s)	143, 342, 381, 533, 620, 644, 782, 829
TatI	WGTACW	1 cut(s)	816
TfiI	GAWTC	4 cut(s)	367, 942, 1073, 1112
Tru1I	TTAA	8 cut(s)	117, 177, 264, 440, 507, 767, 911, 1053
Tru9I	TTAA	8 cut(s)	117, 177, 264, 440, 507, 767, 911, 1053
TscAI	CASTG	1 cut(s)	1122
TseFI	GTSAC	1 cut(s)	1121
Tsp45I	GTSAC	1 cut(s)	1121
TspDTI	ATGAA	3 cut(s)	63, 332, 794
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	1 cut(s)	1122
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	4 cut(s)	533, 620, 782, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1031
XmnI	GAANNNNTTC	2 cut(s)	605, 997
XspI	CTAG	1 cut(s)	930
ZrmI	AGTACT	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.