Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0016657

Physical Location & Seq

Genomic Coordinates Forward (+)

29832593 .. 29833960

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGCCATTAGGGTTCTAACGAGAACCACAGTTACACGCTTCACAAGCATTTTAACCGCCAAGCAAATCCCAAATTTCCCAAACCAAAAGTCCCAATCTTTTTCCACAAACCCAGCAAAACCCAGATTTACCCACCAATCCCAGTACCGGAAACAGATTTCCCTCGCCACTCTGCTCCAAAGGTACGGCTTCCCATCTTCTCTGCTCCACAATTTCCTCTCAAAGCATCAATTTTTATTGAATTCCAACTTACAGGAATTAGAGAAGTCTCTGGCTATACTTTTATCCTTCAAAATCCCTCAGAAATCCCTTGTTTCTTTGATTTGTGACTGCCCTGGGGTTTTGGATTTTCAGTTTCTGAAGAAATGGGAAAAGGGTTTTTCAAATTTGGGGATTTTGAGTGCTTCCCCATTGATGGTTAGGAGTGTTTTGGAACAATCTAAGAGGTTTCAGATTGACCCAGATGGGGTTTTTAGGAGTGTGGAGGTTTTGAGGGGTTTAGGGTTTATGGATGGCACGGTTATTAAGGTTTTAGAGGGGTTTCCAGGAGTGATTTTGATGAATGGGAGGGAGATTCAACGGAGAATCGAATTCTTGGAGGGAATTGGAATTTTGAGGGATGAAATTAATTGGGTTCTAAAATATTTTCCTGGGGTTATAGGATTTGGGGTTGAAGATAGGCTGAAGCCATTGCTGTGTGAGTTTAAAGGTTTCGGTTTTAGCGAGGATGTGATTAGGACAGAGATAATGAAAGAGCCGCGAATTCTTGGCATGGAATTGGGCGAATTTTCGCAGTGTGTGGAATTCTTGAGGACTTTGAAGTGTAGGGTACCAATCAAGGAGAAGATTTTCAGTGAGGGAGAATTTAGAGCTGGGTTTGAAGTGAAGTTGAGAGTTGACTGCTTGTGCGGATACGGGTTGATTCGTAGAGAGGCTTTTGAGGTGTTGTGGAAGGAACCGAGGTCAATTATATTTAAGGTGGGGGAAATTGAGAGGAAGATTGAGTTTTTAATACAAAGGATGAAATTCAGTACCCGTTGTTTGGTTGAAGTTCCACAGTATTTGGGTGTGAATTTTGAGAAGCAGATCATTCCTCGGTACAATGTGATCGAGTATTTGAGATCTAAAGGCGGGCTTGGTTATGAGGTGGGGTTAAGGGGTTTGATCAGGCCTAGCAGGCTTAGATTCTATAACCTGTACGTCAAGCCATATCCGGACTGTGAAAAAATGTTTGGGAGATTTTCAGGAGATGTTAAAGTTCAAAGCCGACATCCTGCTGGACTATGGAAGCTTTTCAAGCCACAAAAGTATCCAGAATCCAAGGAAGATGTGACGAACACAAAGCTATTTATGAAATCTCTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

456

Amino Acids

52.59

Weight (kDa)

9.67

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	45 - 272	7.7e-18	mTERF
mTERF	PF02536	196 - 327	5.1e-11	mTERF
mTERF	PF02536	297 - 371	1.7e-11	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74120
fragaria_vesca	FvH4_5g13630
malus_domestica	MD14G1214100.v1.1
prunus_persica	Prupe.5G207400_v2.0.a1
pyrus_communis	pycom14g17750
rosa_chinensis	RchiOBHm_Chr7g0183331
rosa_laevigata	RLG00000005056
rosa_multiflora	Rmu_sc0029438.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270570
rosa_samantha	Rh7AG058200 Rh7BG058000 Rh7CG059600 Rh7DG057900
rosa_wichuraiana	Rw7G004780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	829
AccB1I	GGYRCC	1 cut(s)	829
AccII	CGCG	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	1213
AciI	CCGC	4 cut(s)	57, 758, 909, 1131
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	380, 704
AfaI	GTAC	6 cut(s)	146, 185, 831, 1033, 1100, 1199
AfiI	CCNNNNNNNGG	4 cut(s)	147, 415, 466, 1042
AjnI	CCWGG	3 cut(s)	334, 544, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	1215, 1247
AluBI	AGCT	3 cut(s)	872, 1291, 1345
AluI	AGCT	3 cut(s)	872, 1291, 1345
Alw26I	GTCTC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	358
Aor13HI	TCCGGA	1 cut(s)	1213
AoxI	GGCC	2 cut(s)	3, 1169
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	2 cut(s)	848, 1292
Asp718I	GGTACC	1 cut(s)	829
BaeI	ACNNNNGTAYC	2 cut(s)	1292, 1325
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	829
BccI	CCATC	4 cut(s)	202, 409, 458, 506
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	3 cut(s)	336, 546, 651
BciVI	GTATCC	2 cut(s)	905, 1320
BclI	TGATCA	1 cut(s)	1164
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	1173
BfuI	GTATCC	2 cut(s)	905, 1320
BglI	GCCNNNNNGGC	1 cut(s)	1177
BglII	AGATCT	1 cut(s)	1121
BisI	GCNGC	1 cut(s)	758
BlsI	GCNGC	1 cut(s)	759
Bme1390I	CCNGG	3 cut(s)	336, 546, 651
BmiI	GGNNCC	2 cut(s)	831, 957
BmrFI	CCNGG	3 cut(s)	336, 546, 651
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	829
BsaJI	CCNNGG	6 cut(s)	334, 335, 650, 959, 1094, 1320
BsaWI	WCCGGW	2 cut(s)	147, 1213
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 415, 466, 1042
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	689
BseAI	TCCGGA	1 cut(s)	1213
BseBI	CCWGG	3 cut(s)	336, 546, 651
BseDI	CCNNGG	6 cut(s)	334, 335, 650, 959, 1094, 1320
BseGI	GGATG	5 cut(s)	517, 625, 733, 1026, 1270
BseLI	CCNNNNNNNGG	4 cut(s)	147, 415, 466, 1042
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	142
BseYI	CCCAGC	2 cut(s)	112, 872
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	2 cut(s)	5, 1171
BshNI	GGYRCC	1 cut(s)	829
BsiSI	CCGG	2 cut(s)	148, 1214
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	4 cut(s)	147, 415, 466, 1042
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	5, 1171
Bsp13I	TCCGGA	1 cut(s)	1213
Bsp143I	GATC	4 cut(s)	1086, 1107, 1121, 1164
BspACI	CCGC	4 cut(s)	57, 758, 909, 1131
BspANI	GGCC	2 cut(s)	5, 1171
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	1213
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	831, 957
BspT107I	GGYRCC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	6 cut(s)	334, 335, 650, 959, 1094, 1320
BssMI	GATC	4 cut(s)	1086, 1107, 1121, 1164
BssT1I	CCWWGG	1 cut(s)	1320
Bst2UI	CCWGG	3 cut(s)	336, 546, 651
Bst4CI	ACNGT	4 cut(s)	31, 520, 1059, 1220
BstC8I	GCNNGC	2 cut(s)	1133, 1178
BstDEI	CTNAG	3 cut(s)	300, 441, 1181
BstF5I	GGATG	5 cut(s)	517, 625, 733, 1026, 1270
BstFNI	CGCG	1 cut(s)	760
BstKTI	GATC	4 cut(s)	1089, 1110, 1124, 1167
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	1086, 1107, 1121, 1164
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 1177, 1297
BstNI	CCWGG	3 cut(s)	336, 546, 651
BstSCI	CCNGG	3 cut(s)	334, 544, 649
BstUI	CGCG	1 cut(s)	760
BstX2I	RGATCY	1 cut(s)	1121
BstYI	RGATCY	1 cut(s)	1121
BsuI	GTATCC	2 cut(s)	905, 1320
BsuRI	GGCC	2 cut(s)	5, 1171
BtsCI	GGATG	5 cut(s)	517, 625, 733, 1026, 1270
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	2 cut(s)	800, 859
Cac8I	GCNNGC	2 cut(s)	1133, 1178
CaiI	CAGNNNCTG	1 cut(s)	358
Csp6I	GTAC	6 cut(s)	145, 184, 830, 1032, 1099, 1198
CspCI	CAANNNNNGTGG	2 cut(s)	1044, 1079
CviAII	CATG	1 cut(s)	772
CviQI	GTAC	6 cut(s)	145, 184, 830, 1032, 1099, 1198
DdeI	CTNAG	3 cut(s)	300, 441, 1181
DpnI	GATC	4 cut(s)	1088, 1109, 1123, 1166
DpnII	GATC	4 cut(s)	1086, 1107, 1121, 1164
DraI	TTTAAA	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	1320
Eco147I	AGGCCT	1 cut(s)	1171
Eco57I	CTGAAG	2 cut(s)	380, 704
EcoRI	GAATTC	4 cut(s)	241, 590, 762, 803
EcoRII	CCWGG	3 cut(s)	334, 544, 649
EcoT14I	CCWWGG	1 cut(s)	1320
ErhI	CCWWGG	1 cut(s)	1320
FaeI	CATG	1 cut(s)	775
FalI	AAGNNNNNCTT	2 cut(s)	1119, 1151
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	771
FauI	CCCGC	1 cut(s)	1124
FbaI	TGATCA	1 cut(s)	1164
Fnu4HI	GCNGC	1 cut(s)	758
FokI	GGATG	5 cut(s)	524, 632, 740, 1033, 1257
Fsp4HI	GCNGC	1 cut(s)	758
FspBI	CTAG	1 cut(s)	1173
GluI	GCNGC	1 cut(s)	758
GsaI	CCCAGC	2 cut(s)	116, 876
HaeIII	GGCC	2 cut(s)	5, 1171
HapII	CCGG	2 cut(s)	148, 1214
Hin1II	CATG	1 cut(s)	775
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	1289
HinfI	GANTC	5 cut(s)	574, 585, 922, 1185, 1316
HpaII	CCGG	2 cut(s)	148, 1214
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	3 cut(s)	303, 360, 453
Hpy188III	TCNNGA	4 cut(s)	808, 1214, 1245, 1313
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	2 cut(s)	298, 946
HpyCH4III	ACNGT	4 cut(s)	31, 520, 1059, 1220
HpyCH4IV	ACGT	1 cut(s)	1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 1177, 1297
HpyF3I	CTNAG	3 cut(s)	300, 441, 1181
HpySE526I	ACGT	1 cut(s)	1200
Hsp92II	CATG	1 cut(s)	775
Kpn2I	TCCGGA	1 cut(s)	1213
KpnI	GGTACC	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	1164
Kzo9I	GATC	4 cut(s)	1086, 1107, 1121, 1164
LmnI	GCTCC	2 cut(s)	180, 210
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	1173
MaeII	ACGT	1 cut(s)	1200
MaeIII	GTNAC	3 cut(s)	31, 326, 1330
MalI	GATC	4 cut(s)	1088, 1109, 1123, 1166
MboI	GATC	4 cut(s)	1086, 1107, 1121, 1164
MboII	GAAGA	6 cut(s)	189, 373, 686, 856, 1009, 1337
MflI	RGATCY	1 cut(s)	1121
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	1213
MroXI	GAANNNNTTC	2 cut(s)	848, 1292
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	8 cut(s)	53, 525, 627, 705, 975, 1010, 1154, 1254
MslI	CAYNNNNRTG	1 cut(s)	694
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	148, 1214
MspR9I	CCNGG	3 cut(s)	336, 546, 651
MvaI	CCWGG	3 cut(s)	336, 546, 651
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	3 cut(s)	45, 1177, 1297
NdeII	GATC	4 cut(s)	1086, 1107, 1121, 1164
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	2 cut(s)	831, 957
NmuCI	GTSAC	2 cut(s)	326, 1330
PasI	CCCWGGG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	1171
PcsI	WCGNNNNNNNCGW	1 cut(s)	720
PdmI	GAANNNNTTC	2 cut(s)	848, 1292
PfeI	GAWTC	5 cut(s)	574, 585, 922, 1185, 1316
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	1 cut(s)	759
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	3 cut(s)	334, 544, 649
PspFI	CCCAGC	2 cut(s)	112, 872
PspGI	CCWGG	3 cut(s)	334, 544, 649
PspN4I	GGNNCC	2 cut(s)	831, 957
PsrI	GAACNNNNNNTAC	2 cut(s)	16, 48
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	1121
RsaI	GTAC	6 cut(s)	146, 185, 831, 1033, 1100, 1199
RsaNI	GTAC	6 cut(s)	145, 184, 830, 1032, 1099, 1198
RseI	CAYNNNNRTG	1 cut(s)	694
SaqAI	TTAA	8 cut(s)	53, 525, 627, 705, 975, 1010, 1154, 1254
SatI	GCNGC	1 cut(s)	758
Sau3AI	GATC	4 cut(s)	1086, 1107, 1121, 1164
ScrFI	CCNGG	3 cut(s)	336, 546, 651
SfaNI	GCATC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
SseBI	AGGCCT	1 cut(s)	1171
SsiI	CCGC	4 cut(s)	57, 758, 909, 1131
SspI	AATATT	1 cut(s)	644
SspMI	CTAG	1 cut(s)	1173
StuI	AGGCCT	1 cut(s)	1171
StyD4I	CCNGG	3 cut(s)	334, 544, 649
StyI	CCWWGG	1 cut(s)	1320
TaaI	ACNGT	4 cut(s)	31, 520, 1059, 1220
TaiI	ACGT	1 cut(s)	1203
TaqI	TCGA	2 cut(s)	588, 1110
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	5 cut(s)	574, 585, 922, 1185, 1316
Tru1I	TTAA	8 cut(s)	53, 525, 627, 705, 975, 1010, 1154, 1254
Tru9I	TTAA	8 cut(s)	53, 525, 627, 705, 975, 1010, 1154, 1254
TscAI	CASTG	2 cut(s)	800, 859
TseFI	GTSAC	2 cut(s)	326, 1330
Tsp45I	GTSAC	2 cut(s)	326, 1330
TspDTI	ATGAA	5 cut(s)	575, 636, 764, 1037, 1367
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	2 cut(s)	800, 859
VspI	ATTAAT	1 cut(s)	627
XmnI	GAANNNNTTC	2 cut(s)	848, 1292
XspI	CTAG	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.