AT1G76185

Has 37 Blast hits to 37 proteins in 11 species Archae - 0

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28590325 .. 28591531
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76185.1

Sequence Viewer

Length: 321 bp
ATGATAACAAGATCGAATCTAGCAGAACAGCTCAGGGAATATCAGATTAGATCAAAGCATGATTGGGCCTCCGTTTCTTTCTTCTCTTCCACCTCCAATTTCTCTTCCTCCAGGGTTGATGTTGTAGTCTTTGTCATATGGGAACTAGTGATGTTAGCACTCGTGGTGTTTTCAGCTGTATCCTTGTACTTCAGGCGGTTGCAACTTGCTTTTATCCTGCTTTGTGTCACCTTACTATTACTCCTCTGTATGAAAATCACAAAGCAAGTGAGACATGCTAGGAAGAAGAAGCGAAGGATGCTTCTTCCTCTCTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.42

Weight (kDa)

10.95

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20460 AT1G76185
fragaria_vesca FvH4_2g37670
malus_domestica MD08G1004300.v1.1 MD15G1003700.v1.1
prunus_persica Prupe.1G356200_v2.0.a1
pyrus_communis pycom08g00310 pycom15g00260
rosa_chinensis RchiOBHm_Chr6g0304061
rosa_laevigata RLG00000011021
rosa_roxburghii Rroxscaffold_7G00164140
rosa_rugosa Rorug06G0327400
rosa_samantha Rh6AG441200 Rh6BG461600
rosa_wichuraiana Rw6G038230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 1 cut(s) 188
AhlI ACTAGT 1 cut(s) 145
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 2 cut(s) 31, 176
AluI AGCT 2 cut(s) 31, 176
Alw26I GTCTC 1 cut(s) 265
AoxI GGCC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 220
BauI CACGAG 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 112
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 265
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 3 cut(s) 20, 146, 279
BfuI GTATCC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 46
BseRI GAGGAG 1 cut(s) 233
BshFI GGCC 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 11, 50
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 11, 50
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 91, 109
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 2 cut(s) 14, 53
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 2 cut(s) 11, 50
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 110
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 59, 275
CviJI RGCY 3 cut(s) 31, 68, 176
CviKI_1 RGCY 3 cut(s) 31, 68, 176
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 13, 52
DpnII GATC 2 cut(s) 11, 50
Eam1104I CTCTTC 2 cut(s) 91, 109
EarI CTCTTC 2 cut(s) 91, 109
Eco57I CTGAAG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 110
FaeI CATG 2 cut(s) 62, 278
FaiI YATR 6 cut(s) 60, 137, 139, 251, 276, 317
FatI CATG 2 cut(s) 58, 274
FauNDI CATATG 1 cut(s) 137
FokI GGATG 1 cut(s) 310
FspBI CTAG 3 cut(s) 20, 146, 279
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 2 cut(s) 62, 278
HinfI GANTC 1 cut(s) 16
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 2 cut(s) 62, 278
Kzo9I GATC 2 cut(s) 11, 50
LpnPI CCDG 5 cut(s) 19, 97, 124, 178, 230
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 20, 146, 279
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 13, 52
MboI GATC 2 cut(s) 11, 50
MboII GAAGA 6 cut(s) 73, 78, 96, 295, 296, 298
MluCI AATT 1 cut(s) 97
MnlI CCTC 5 cut(s) 79, 103, 118, 254, 318
MspA1I CMGCKG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 298
NdeI CATATG 1 cut(s) 137
NdeII GATC 2 cut(s) 11, 50
NlaIII CATG 2 cut(s) 62, 278
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 1 cut(s) 278
PfeI GAWTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
Sau3AI GATC 2 cut(s) 11, 50
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 112
SetI ASST 4 cut(s) 33, 95, 178, 233
SfaNI GCATC 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 145
Sse9I AATT 1 cut(s) 97
SsiI CCGC 1 cut(s) 196
SspMI CTAG 3 cut(s) 20, 146, 279
StyD4I CCNGG 1 cut(s) 110
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 97
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 1 cut(s) 16
TseFI GTSAC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 278
XspI CTAG 3 cut(s) 20, 146, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.