FvH4_2g37670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015937
Physical Location & Seq
Reverse (-)
27377939 .. 27379057
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37670.t1

Sequence Viewer

Length: 321 bp
ATGATAACGCGATCGAATCTGGCGGATCAGTTGAGAGAGTATCAGATTCGATCGAAGCATGACTGGGCCTCCGTCTCGTTCTTCTCCTCCACCTCTAACCACACTTTGTCAAGGGTAGATGTTGTGCTCTTTGTAATATGGGAATTGGTAATTCTAGCTTTCCTGGTGTTCTCAGCAGTTTCATTGTACTTTAGGCATATGCGACTTGCTTTCATCCTAGCATGCATCGCAATGCTTTTGCTTTTGTGCATAAAAGTTACTAGACAAGTGAAGTTGGCTCGGAAAAAGAAACGAAGGATGCTGCTTCCATTATCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.42

Weight (kDa)

10.95

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20460 AT1G76185
fragaria_vesca FvH4_2g37670
malus_domestica MD08G1004300.v1.1 MD15G1003700.v1.1
prunus_persica Prupe.1G356200_v2.0.a1
pyrus_communis pycom08g00310 pycom15g00260
rosa_chinensis RchiOBHm_Chr6g0304061
rosa_laevigata RLG00000011021
rosa_roxburghii Rroxscaffold_7G00164140
rosa_rugosa Rorug06G0327400
rosa_samantha Rh6AG441200 Rh6BG461600
rosa_wichuraiana Rw6G038230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 33
AfaI GTAC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 3 cut(s) 155, 218, 261
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 234, 288
BmuI ACTGGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse1I ACTGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 2 cut(s) 213, 303
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 2 cut(s) 14, 53
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 2 cut(s) 14, 53
BsiHKAI GWGCWC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 11, 25, 50
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 10
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 1 cut(s) 68
BssMI GATC 3 cut(s) 11, 25, 50
Bst2UI CCWGG 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 213, 303
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 3 cut(s) 14, 28, 53
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 3 cut(s) 11, 25, 50
BstMCI CGRYCG 2 cut(s) 14, 53
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 213, 303
Cac8I GCNNGC 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 59, 222
CviJI RGCY 3 cut(s) 68, 158, 278
CviKI_1 RGCY 3 cut(s) 68, 158, 278
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 172
DpnI GATC 3 cut(s) 13, 27, 52
DpnII GATC 3 cut(s) 11, 25, 50
EciI GGCGGA 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 227
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 62, 225
FaiI YATR 7 cut(s) 60, 139, 198, 200, 223, 251, 317
FatI CATG 2 cut(s) 58, 221
FauNDI CATATG 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 302
FokI GGATG 2 cut(s) 200, 310
Fsp4HI GCNGC 1 cut(s) 302
FspBI CTAG 3 cut(s) 155, 218, 261
GluI GCNGC 1 cut(s) 302
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 2 cut(s) 62, 225
HinfI GANTC 2 cut(s) 16, 46
Hpy188I TCNGA 2 cut(s) 45, 282
HpyAV CCTTC 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 225, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 172
Hsp92II CATG 2 cut(s) 62, 225
Kzo9I GATC 3 cut(s) 11, 25, 50
LpnPI CCDG 4 cut(s) 5, 49, 149, 176
Lsp1109I GCAGC 1 cut(s) 288
LweI GCATC 2 cut(s) 234, 288
MaeI CTAG 3 cut(s) 155, 218, 261
MaeIII GTNAC 1 cut(s) 256
MalI GATC 3 cut(s) 13, 27, 52
MboI GATC 3 cut(s) 11, 25, 50
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 143, 150
MnlI CCTC 3 cut(s) 79, 97, 103
Mph1103I ATGCAT 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 164
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeI CATATG 1 cut(s) 198
NdeII GATC 3 cut(s) 11, 25, 50
NlaIII CATG 2 cut(s) 62, 225
NsiI ATGCAT 1 cut(s) 227
NspI RCATGY 1 cut(s) 225
PaeI GCATGC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 16, 46
PkrI GCNGC 1 cut(s) 303
Ple19I CGATCG 2 cut(s) 14, 53
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspPI GGNCC 1 cut(s) 66
PvuI CGATCG 2 cut(s) 14, 53
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 230
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 3 cut(s) 11, 25, 50
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 129
SetI ASST 2 cut(s) 95, 160
SfaNI GCATC 2 cut(s) 234, 288
SmiMI CAYNNNNRTG 1 cut(s) 230
SphI GCATGC 1 cut(s) 225
Sse9I AATT 2 cut(s) 143, 150
SsiI CCGC 1 cut(s) 23
SspMI CTAG 3 cut(s) 155, 218, 261
StyD4I CCNGG 1 cut(s) 162
TaqI TCGA 3 cut(s) 14, 49, 53
TasI AATT 2 cut(s) 143, 150
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 16, 46
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 171, 202
TspGWI ACGGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 225
XspI CTAG 3 cut(s) 155, 218, 261
Zsp2I ATGCAT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.