pycom08g00310

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
308973 .. 310412
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00310.1

Sequence Viewer

Length: 324 bp
ATGATAACGCGATCGAATCTGGCGGAGCAGTTGAGAGAGTATCAGATTCGATCGAAGCATGACTGGGCCTCCGTCTCCTTCTTCTCCTCCACCTCCTCCACTCATACTTTGTCAAGGGTGGATGTAGTGCTCTTTGTAATATGGGAACTGGTAATCCTAGCTTTCTTGGTTTTTTCGGCAGTTTCTTTATATTTTAGGCATATGCGACTTGCTTTTGTCTTAGCATGTATTGCAATGCTCTTGCTTTTGTGCATAAAAGTTACAAAGCAAGTGAGATTGGCTAGGAAAAAGAAACGGAGGATGCTTCTTCCATTATCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

10.95

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015937)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20460 AT1G76185
fragaria_vesca FvH4_2g37670
malus_domestica MD08G1004300.v1.1 MD15G1003700.v1.1
prunus_persica Prupe.1G356200_v2.0.a1
pyrus_communis pycom08g00310 pycom15g00260
rosa_chinensis RchiOBHm_Chr6g0304061
rosa_laevigata RLG00000011021
rosa_roxburghii Rroxscaffold_7G00164140
rosa_rugosa Rorug06G0327400
rosa_samantha Rh6AG441200 Rh6BG461600
rosa_wichuraiana Rw6G038230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 23
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 79
AoxI GGCC 1 cut(s) 66
AspS9I GGNCC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 2 cut(s) 158, 282
BmgT120I GGNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 291
BmuI ACTGGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse1I ACTGG 2 cut(s) 68, 153
Bse3DI GCAATG 1 cut(s) 240
BseGI GGATG 2 cut(s) 127, 306
BseMI GCAATG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 68, 153
BseRI GAGGAG 2 cut(s) 76, 85
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 2 cut(s) 14, 53
BshFI GGCC 1 cut(s) 68
BsiEI CGRYCG 2 cut(s) 14, 53
BsiHKAI GWGCWC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 11, 50
BspACI CCGC 1 cut(s) 23
BspANI GGCC 1 cut(s) 68
BspFNI CGCG 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 68, 153
BssMI GATC 2 cut(s) 11, 50
BstAPI GCANNNNNTGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 2 cut(s) 127, 306
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 2 cut(s) 14, 53
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 11, 50
BstMCI CGRYCG 2 cut(s) 14, 53
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 228
BstUI CGCG 1 cut(s) 10
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 2 cut(s) 127, 306
Cfr13I GGNCC 1 cut(s) 66
CviAII CATG 2 cut(s) 59, 225
CviJI RGCY 3 cut(s) 68, 161, 281
CviKI_1 RGCY 3 cut(s) 68, 161, 281
DdeI CTNAG 1 cut(s) 220
DpnI GATC 2 cut(s) 13, 52
DpnII GATC 2 cut(s) 11, 50
EciI GGCGGA 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 62, 228
FaiI YATR 9 cut(s) 60, 105, 142, 190, 201, 203, 226, 254, 320
FatI CATG 2 cut(s) 58, 224
FauNDI CATATG 1 cut(s) 201
FokI GGATG 2 cut(s) 134, 313
FspBI CTAG 2 cut(s) 158, 282
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 2 cut(s) 62, 228
HinfI GANTC 2 cut(s) 16, 46
Hpy188I TCNGA 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 233, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 2 cut(s) 62, 228
Kzo9I GATC 2 cut(s) 11, 50
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 5, 49, 134
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 158, 282
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 13, 52
MboI GATC 2 cut(s) 11, 50
MboII GAAGA 2 cut(s) 73, 299
MhlI GDGCHC 1 cut(s) 132
MnlI CCTC 5 cut(s) 79, 97, 103, 106, 291
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeI CATATG 1 cut(s) 201
NdeII GATC 2 cut(s) 11, 50
NlaIII CATG 2 cut(s) 62, 228
NspI RCATGY 1 cut(s) 228
PfeI GAWTC 2 cut(s) 16, 46
Ple19I CGATCG 2 cut(s) 14, 53
PspPI GGNCC 1 cut(s) 66
PvuI CGATCG 2 cut(s) 14, 53
Sau3AI GATC 2 cut(s) 11, 50
Sau96I GGNCC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 95, 163
SfaNI GCATC 1 cut(s) 291
SsiI CCGC 1 cut(s) 23
SspMI CTAG 2 cut(s) 158, 282
TaqI TCGA 3 cut(s) 14, 49, 53
TfiI GAWTC 2 cut(s) 16, 46
TspGWI ACGGA 2 cut(s) 61, 310
XceI RCATGY 1 cut(s) 228
XspI CTAG 2 cut(s) 158, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.