AT1G76240

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016175
Physical Location & Seq
Reverse (-)
28602705 .. 28603932
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76240.1

Sequence Viewer

Length: 927 bp
ATGGTTGGAGTTTTCCGACGATCACTCTCATTCCCTAACAAACCTTGCGGCCGATCATCTCCATCGTCAAAGCCACGTGTCTCTCATCACACAAGATCCATCAGTCTACCCTGCCGGTCTCATCCCTTAATCTCCCACGTTAACCACGAGATCTCTCAGCTCAAATCCTGGTTCTCATTCGCCGGAGAAACTCACAGCCGCACCACCTCTTGGATCACCGACGGTCTCAGTCTCCTCAAGGACGTTCAAGAAACGCTCGCTGATATACTTCAGCTCCCACAATCTCAAGAATCTCTACGAAACCGTCCTGTTTTCTTCGAGAATCTTCTAGAAGATCTTCTCCGATTCGTTGACGCTTACGGAATCTTCCGTACGTCGATCCTCTGCCTCCGTGAGCACCAGTCCGCCGCTCAAGTCGCTCTCCGTAAAAAAGACGACGAGAAAATCGCATCTTACCTAAAATCTCGCCGATCTCTCGCAAGAGATATCGCGAAACTGACGTCATCGATCCGTGAGCCGAAGACAAAACACCAACACTGCCACGTAGACAACGTTAACGGAACGTACGGTGACGCAGAGCTTGCGTCAGTTATAGGTGACGTCATTGAAGTAACTGTTTTGGTTTCCGTTGCTCTCTTTAACGGCGTTTACTTATCTCTCAGAGCCACCAAAACAACGCCGTTTATAGGGTTTTTGAAACGATCCGAAAAAAAGGAGAAACTAGACGAAGGAATCGTGGAGTTGAAGCAAGTTGAAGAGAAAAGCTTGATTGGTTTAAGCAAGAAGAAGAACGAAGAAGTAAAGAGTTTGATGAAGAGGATGATGGAATTGGAGAATTCGATCCGTGAAATCGAATGTGAGAGTGAGAAAGTGTTTAGGGGTTTGATTAGCACTCGAGTCTCATTGCTTAATGCCCTAACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

308

Amino Acids

34.88

Weight (kDa)

9.38

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 75 - 304 5.7e-50 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76240
fragaria_vesca FvH4_2g37580
malus_domestica MD08G1003400.v1.1
prunus_persica Prupe.1G355300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304151
rosa_laevigata RLG00000011010
rosa_multiflora Rmu_co8398387.1_g000001 Rmu_ssc0000218.1_g000007
rosa_roxburghii Rroxscaffold_7G00164020
rosa_rugosa Rorug06G0328000
rosa_samantha Rh6AG442100 Rh6BG460700 Rh6CG454300 Rh6DG441500
rosa_wichuraiana Rw6G038320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 503, 603
AccB7I CCANNNNNTGG 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 410
AccI GTMKAC 2 cut(s) 106, 546
AccII CGCG 1 cut(s) 491
AciI CCGC 4 cut(s) 48, 199, 405, 408
AclI AACGTT 1 cut(s) 552
AclWI GGATC 6 cut(s) 90, 221, 373, 502, 696, 835
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 1 cut(s) 254
AcvI CACGTG 1 cut(s) 77
AcyI GRCGYC 2 cut(s) 500, 600
AfaI GTAC 2 cut(s) 373, 566
AfiI CCNNNNNNNGG 2 cut(s) 210, 686
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 5 cut(s) 248, 608, 697, 745, 755
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 4 cut(s) 160, 274, 580, 765
AluI AGCT 4 cut(s) 160, 274, 580, 765
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 5 cut(s) 85, 123, 230, 236, 904
AlwI GGATC 6 cut(s) 90, 221, 373, 502, 696, 835
Ama87I CYCGRG 1 cut(s) 894
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 835
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
Asp700I GAANNNNTTC 1 cut(s) 336
AsuHPI GGTGA 3 cut(s) 208, 581, 608
AvaI CYCGRG 1 cut(s) 894
BauI CACGAG 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 399
BccI CCATC 3 cut(s) 70, 107, 817
BceAI ACGGC 2 cut(s) 658, 664
BciT130I CCWGG 1 cut(s) 169
BcoDI GTCTC 5 cut(s) 85, 123, 230, 236, 904
BfaI CTAG 2 cut(s) 329, 722
BglII AGATCT 2 cut(s) 150, 334
BisI GCNGC 3 cut(s) 49, 199, 408
BlsI GCNGC 3 cut(s) 50, 200, 409
Bme1390I CCNGG 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 894
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 458
BpiI GAAGAC 1 cut(s) 527
BpuEI CTTGAG 3 cut(s) 221, 270, 396
Bsa29I ATCGAT 1 cut(s) 506
BsaAI YACGTR 2 cut(s) 77, 544
BsaHI GRCGYC 2 cut(s) 500, 600
BsaI GGTCTC 2 cut(s) 123, 230
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 686
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 902
BseBI CCWGG 1 cut(s) 169
BseCI ATCGAT 1 cut(s) 506
BseGI GGATG 2 cut(s) 121, 825
BseLI CCNNNNNNNGG 2 cut(s) 210, 686
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 3 cut(s) 170, 241, 673
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 491
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 894
BsiSI CCGG 2 cut(s) 115, 183
BsiWI CGTACG 2 cut(s) 371, 564
BslI CCNNNNNNNGG 2 cut(s) 210, 686
BsmAI GTCTC 5 cut(s) 85, 123, 230, 236, 904
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 2 cut(s) 123, 230
BsoBI CYCGRG 1 cut(s) 894
Bsp1286I GDGCHC 1 cut(s) 399
Bsp68I TCGCGA 1 cut(s) 491
BspACI CCGC 4 cut(s) 48, 199, 405, 408
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 3 cut(s) 169, 240, 672
BspDI ATCGAT 1 cut(s) 506
BspFNI CGCG 1 cut(s) 491
BspPI GGATC 6 cut(s) 90, 221, 373, 502, 696, 835
BspTNI GGTCTC 2 cut(s) 123, 230
BsrBI CCGCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 902
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 1 cut(s) 400
BssAI RCCGGY 1 cut(s) 114
BssNI GRCGYC 2 cut(s) 500, 600
BssSI CACGAG 1 cut(s) 146
Bst2BI CACGAG 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 4 cut(s) 224, 305, 569, 616
Bst6I CTCTTC 2 cut(s) 750, 809
BstACI GRCGYC 2 cut(s) 500, 600
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 2 cut(s) 77, 544
BstC8I GCNNGC 2 cut(s) 258, 582
BstDEI CTNAG 3 cut(s) 156, 227, 659
BstF5I GGATG 2 cut(s) 121, 825
BstFNI CGCG 1 cut(s) 491
BstMAI GTCTC 5 cut(s) 85, 123, 230, 236, 904
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 416, 581
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstUI CGCG 1 cut(s) 491
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 3 cut(s) 95, 150, 334
BstYI RGATCY 3 cut(s) 95, 150, 334
BstZI CGGCCG 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 506
BsuRI GGCC 1 cut(s) 51
BsuTUI ATCGAT 1 cut(s) 506
BtsCI GGATG 2 cut(s) 121, 825
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 535
BtuMI TCGCGA 1 cut(s) 491
Cac8I GCNNGC 2 cut(s) 258, 582
Cfr10I RCCGGY 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 506
CseI GACGC 3 cut(s) 362, 573, 581
Csp6I GTAC 2 cut(s) 372, 565
CviJI RGCY 9 cut(s) 51, 73, 160, 198, 274, 517, 580, 665, 765
CviKI_1 RGCY 9 cut(s) 51, 73, 160, 198, 274, 517, 580, 665, 765
CviQI GTAC 2 cut(s) 372, 565
DdeI CTNAG 3 cut(s) 156, 227, 659
EaeI YGGCCR 1 cut(s) 49
EagI CGGCCG 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 750, 809
EarI CTCTTC 2 cut(s) 750, 809
EciI GGCGGA 1 cut(s) 394
EclXI CGGCCG 1 cut(s) 49
Eco31I GGTCTC 2 cut(s) 123, 230
Eco32I GATATC 1 cut(s) 487
Eco52I CGGCCG 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 894
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 167
EcoRV GATATC 1 cut(s) 487
FaiI YATR 3 cut(s) 266, 593, 686
FblI GTMKAC 2 cut(s) 106, 546
Fnu4HI GCNGC 3 cut(s) 49, 199, 408
FokI GGATG 2 cut(s) 108, 832
Fsp4HI GCNGC 3 cut(s) 49, 199, 408
FspBI CTAG 2 cut(s) 329, 722
GluI GCNGC 3 cut(s) 49, 199, 408
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 115, 183
HgaI GACGC 3 cut(s) 362, 573, 581
Hin1I GRCGYC 2 cut(s) 500, 600
HincII GTYRAC 3 cut(s) 142, 352, 556
HindII GTYRAC 3 cut(s) 142, 352, 556
HindIII AAGCTT 1 cut(s) 763
HinfI GANTC 6 cut(s) 290, 322, 345, 363, 732, 897
HpaI GTTAAC 2 cut(s) 142, 556
HpaII CCGG 2 cut(s) 115, 183
HphI GGTGA 3 cut(s) 208, 581, 608
Hpy166II GTNNAC 6 cut(s) 107, 142, 352, 547, 556, 649
Hpy188I TCNGA 4 cut(s) 17, 344, 662, 706
Hpy188III TCNNGA 5 cut(s) 248, 287, 319, 329, 490
Hpy8I GTNNAC 6 cut(s) 107, 142, 352, 547, 556, 649
Hpy99I CGWCG 4 cut(s) 21, 224, 379, 440
HpyAV CCTTC 1 cut(s) 722
HpyCH4III ACNGT 4 cut(s) 224, 305, 569, 616
HpyCH4IV ACGT 9 cut(s) 76, 138, 243, 374, 500, 543, 552, 563, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 581
HpyF3I CTNAG 3 cut(s) 156, 227, 659
HpySE526I ACGT 9 cut(s) 76, 138, 243, 374, 500, 543, 552, 563, 600
Hsp92I GRCGYC 2 cut(s) 500, 600
KspAI GTTAAC 2 cut(s) 142, 556
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 7 cut(s) 124, 128, 154, 181, 196, 321, 413
LweI GCATC 1 cut(s) 458
MaeI CTAG 2 cut(s) 329, 722
MaeII ACGT 9 cut(s) 76, 138, 243, 374, 500, 543, 552, 563, 600
MaeIII GTNAC 3 cut(s) 569, 596, 610
MbiI CCGCTC 1 cut(s) 410
MflI RGATCY 3 cut(s) 95, 150, 334
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 2 cut(s) 827, 835
MlyI GAGTC 1 cut(s) 906
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 5 cut(s) 217, 245, 392, 398, 810
MroXI GAANNNNTTC 1 cut(s) 336
MseI TTAA 7 cut(s) 128, 141, 555, 639, 776, 909, 925
MspI CCGG 2 cut(s) 115, 183
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 2 cut(s) 416, 581
NmuCI GTSAC 2 cut(s) 569, 596
NruI TCGCGA 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 894
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 549, 732
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 5 cut(s) 290, 322, 345, 363, 732
Pfl23II CGTACG 2 cut(s) 371, 564
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 3 cut(s) 50, 200, 409
PleI GAGTC 1 cut(s) 905
PmaCI CACGTG 1 cut(s) 77
PmlI CACGTG 1 cut(s) 77
PpsI GAGTC 1 cut(s) 905
Ppu21I YACGTR 2 cut(s) 77, 544
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 167
PspCI CACGTG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 167
PspLI CGTACG 2 cut(s) 371, 564
PspXI VCTCGAGB 1 cut(s) 894
PsuI RGATCY 3 cut(s) 95, 150, 334
RruI TCGCGA 1 cut(s) 491
RsaI GTAC 2 cut(s) 373, 566
RsaNI GTAC 2 cut(s) 372, 565
SaqAI TTAA 7 cut(s) 128, 141, 555, 639, 776, 909, 925
SatI GCNGC 3 cut(s) 49, 199, 408
SchI GAGTC 1 cut(s) 906
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 1 cut(s) 458
Sfr274I CTCGAG 1 cut(s) 894
SlaI CTCGAG 1 cut(s) 894
SmlI CTYRAG 4 cut(s) 236, 285, 411, 894
SmoI CTYRAG 4 cut(s) 236, 285, 411, 894
Sse9I AATT 2 cut(s) 827, 835
SsiI CCGC 4 cut(s) 48, 199, 405, 408
SspMI CTAG 2 cut(s) 329, 722
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 4 cut(s) 224, 305, 569, 616
TaiI ACGT 9 cut(s) 79, 141, 246, 377, 503, 546, 555, 566, 603
TaqI TCGA 6 cut(s) 318, 377, 506, 839, 852, 895
TasI AATT 2 cut(s) 827, 835
TauI GCSGC 3 cut(s) 51, 201, 410
TfiI GAWTC 5 cut(s) 290, 322, 345, 363, 732
Tru1I TTAA 7 cut(s) 128, 141, 555, 639, 776, 909, 925
Tru9I TTAA 7 cut(s) 128, 141, 555, 639, 776, 909, 925
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 2 cut(s) 569, 596
Tsp45I GTSAC 2 cut(s) 569, 596
TspDTI ATGAA 1 cut(s) 827
TspGWI ACGGA 8 cut(s) 359, 375, 380, 413, 500, 573, 616, 833
TspRI CASTG 1 cut(s) 542
Van91I CCANNNNNTGG 1 cut(s) 210
XapI RAATTY 1 cut(s) 835
XbaI TCTAGA 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 894
XmiI GTMKAC 2 cut(s) 106, 546
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 2 cut(s) 329, 722
ZraI GACGTC 2 cut(s) 501, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.