Rroxscaffold_7G00164020

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016175
Physical Location & Seq
Forward (+)
6115041 .. 6115952
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164020.1

Sequence Viewer

Length: 912 bp
ATGGTAGGCGTTTTCCGCCGCTCTCTTTCCTTCCCAAACAAACCCAATACCAACCGTCCGTCCAAACCTAGCTCAGCTCGTCACACCAGGTCTGTAAGTCTTCCATGCAGATCGCACCCATTGATCTCTCAGCTCAAGGACCACATCTCCGAGCTCCAATCATGGTCCTCCAAGTGTGATTCCTCCTCTGCTTGGCTCGTCGACGGCCTGACCCGCCTGACGGAGTTGCACCACTGCCTTGACGACACTCTTCAGCTTCCACAGACCCAAGAAGCCCTCCACCGCCAGCCACACTACTCATCCATCGAGAACCTTCTAGAACAGTTCCTCCGCTTCGTCGACGTGTACGGCATCTTCCGGAGCTCCGTTTTGGCTCTCAAGGAGGAACATTCGGCGGCTCAAGTGGCTATGAGGAAGAGAGACGAGTCTAAGATTGCTTTGTACGTGAAAGCCCGAAAGAGAATGGCCATAGAAATGTCTAAGATCGTGAACGAAGTTCGCTTCTGTACTAGGTCATCCGAGTCTGTCTCTCCTAACAGTGTTAACGTCGGAGATGTTGAGCTCGCCGCCGTTGTGAGCGACGTCGTTCAGGTGACGGTGACGGTGTCTGTTTTACTCTTTAACGGAATTGCATTGTCATTTGGGCCGCGAAAATCAATCACGTGGATGAATATGGGGATGGTGAAGAAAGGCAAGGTTGATAATCAGAATCAAGGGATTCATGAGTTTGAACAAGTTGGGATTAAGAGCTTGTTGGGTTTGAGGAAGAAAGGAGATGAAGAGGTCAAGATGACTTTGAAGAAAATGCGAGAATTGGAGACCTCCATTGAAGGAATTGAAACTTGCACTGAAAGAGTTTTTAGGGGTTTGATTAACGCAAGGGTTGCGCTGCTCAACACTCTTACTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

303

Amino Acids

34.05

Weight (kDa)

9.47

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 69 - 299 5.1e-53 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76240
fragaria_vesca FvH4_2g37580
malus_domestica MD08G1003400.v1.1
prunus_persica Prupe.1G355300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304151
rosa_laevigata RLG00000011010
rosa_multiflora Rmu_co8398387.1_g000001 Rmu_ssc0000218.1_g000007
rosa_roxburghii Rroxscaffold_7G00164020
rosa_rugosa Rorug06G0328000
rosa_samantha Rh6AG442100 Rh6BG460700 Rh6CG454300 Rh6DG441500
rosa_wichuraiana Rw6G038320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 585
AccBSI CCGCTC 1 cut(s) 21
AccI GTMKAC 2 cut(s) 201, 339
AccII CGCG 1 cut(s) 649
AccIII TCCGGA 1 cut(s) 357
AciI CCGC 8 cut(s) 16, 19, 214, 283, 331, 395, 567, 647
AcoI YGGCCR 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 236
AcvI CACGTG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 3 cut(s) 347, 443, 508
AfiI CCNNNNNNNGG 2 cut(s) 192, 220
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 4 cut(s) 731, 799, 830, 839
AjiI CACGTC 1 cut(s) 343
AjnI CCWGG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 9 cut(s) 72, 77, 133, 154, 256, 363, 562, 750, 909
AluI AGCT 9 cut(s) 72, 77, 133, 154, 256, 363, 562, 750, 909
Alw21I GWGCWC 3 cut(s) 156, 365, 564
Alw26I GTCTC 3 cut(s) 414, 532, 812
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 3 cut(s) 205, 465, 644
ApeKI GCWGC 1 cut(s) 889
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 3 cut(s) 139, 165, 644
AsuHPI GGTGA 3 cut(s) 604, 610, 694
AvaII GGWCC 2 cut(s) 139, 165
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 3 cut(s) 156, 365, 564
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BbrPI CACGTG 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 3 cut(s) 156, 365, 564
BbvI GCAGC 1 cut(s) 876
BccI CCATC 2 cut(s) 311, 673
BceAI ACGGC 3 cut(s) 220, 364, 554
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 3 cut(s) 414, 532, 812
BfaI CTAG 4 cut(s) 69, 317, 510, 906
BisI GCNGC 5 cut(s) 19, 396, 567, 647, 890
BlpI GCTNAGC 1 cut(s) 73
BlsI GCNGC 5 cut(s) 20, 397, 568, 648, 891
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 139, 165
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 3 cut(s) 139, 165, 644
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 360
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 512, 544
Bpu1102I GCTNAGC 1 cut(s) 73
BpuEI CTTGAG 3 cut(s) 119, 362, 384
BsaAI YACGTR 2 cut(s) 445, 663
BsaHI GRCGYC 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 812
BsaWI WCCGGW 1 cut(s) 357
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 312, 342
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 220
BseAI TCCGGA 1 cut(s) 357
BseBI CCWGG 1 cut(s) 88
BseGI GGATG 4 cut(s) 299, 515, 672, 684
BseLI CCNNNNNNNGG 2 cut(s) 192, 220
BseMII CTCAG 2 cut(s) 87, 143
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 3 cut(s) 207, 467, 646
BsiHKAI GWGCWC 3 cut(s) 156, 365, 564
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 2 cut(s) 192, 220
BsmAI GTCTC 3 cut(s) 414, 532, 812
BsmBI CGTCTC 1 cut(s) 414
BsnI GGCC 3 cut(s) 207, 467, 646
Bso31I GGTCTC 1 cut(s) 812
Bsp1286I GDGCHC 3 cut(s) 156, 365, 564
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 3 cut(s) 110, 123, 483
Bsp1720I GCTNAGC 1 cut(s) 73
BspACI CCGC 8 cut(s) 16, 19, 214, 283, 331, 395, 567, 647
BspANI GGCC 3 cut(s) 207, 467, 646
BspCNI CTCAG 2 cut(s) 86, 142
BspEI TCCGGA 1 cut(s) 357
BspFNI CGCG 1 cut(s) 649
BspHI TCATGA 1 cut(s) 721
BspTNI GGTCTC 1 cut(s) 812
BsrBI CCGCTC 1 cut(s) 21
BssMI GATC 3 cut(s) 110, 123, 483
BssNI GRCGYC 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 5 cut(s) 56, 324, 539, 598, 604
Bst6I CTCTTC 3 cut(s) 255, 410, 774
BstACI GRCGYC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 884
BstBAI YACGTR 2 cut(s) 445, 663
BstC8I GCNNGC 2 cut(s) 287, 564
BstDEI CTNAG 4 cut(s) 73, 129, 429, 480
BstF5I GGATG 4 cut(s) 299, 515, 672, 684
BstFNI CGCG 1 cut(s) 649
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 3 cut(s) 113, 126, 486
BstMAI GTCTC 3 cut(s) 414, 532, 812
BstMBI GATC 3 cut(s) 110, 123, 483
BstMWI GCNNNNNNNGC 4 cut(s) 15, 213, 404, 884
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 876
BstV2I GAAGAC 1 cut(s) 92
BsuRI GGCC 3 cut(s) 207, 467, 646
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 4 cut(s) 299, 515, 672, 684
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 232, 544, 846
Cac8I GCNNGC 2 cut(s) 287, 564
CciI TCATGA 1 cut(s) 721
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 3 cut(s) 139, 165, 644
CsiI ACCWGGT 1 cut(s) 86
Csp6I GTAC 3 cut(s) 346, 442, 507
CviAII CATG 3 cut(s) 105, 162, 722
CviQI GTAC 3 cut(s) 346, 442, 507
DdeI CTNAG 4 cut(s) 73, 129, 429, 480
DpnI GATC 3 cut(s) 112, 125, 485
DpnII GATC 3 cut(s) 110, 123, 483
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 3 cut(s) 255, 410, 774
EarI CTCTTC 3 cut(s) 255, 410, 774
EciI GGCGGA 1 cut(s) 5
Ecl136II GAGCTC 3 cut(s) 154, 363, 562
Eco24I GRGCYC 3 cut(s) 156, 365, 564
Eco31I GGTCTC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 139, 165
Eco53kI GAGCTC 3 cut(s) 154, 363, 562
Eco57I CTGAAG 1 cut(s) 236
Eco72I CACGTG 1 cut(s) 663
EcoICRI GAGCTC 3 cut(s) 154, 363, 562
EcoRII CCWGG 1 cut(s) 86
EcoT38I GRGCYC 3 cut(s) 156, 365, 564
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 3 cut(s) 108, 165, 725
FaiI YATR 6 cut(s) 106, 163, 410, 470, 674, 723
FatI CATG 3 cut(s) 104, 161, 721
FauI CCCGC 1 cut(s) 221
FblI GTMKAC 2 cut(s) 201, 339
Fnu4HI GCNGC 5 cut(s) 19, 396, 567, 647, 890
FokI GGATG 4 cut(s) 286, 502, 679, 691
FriOI GRGCYC 3 cut(s) 156, 365, 564
Fsp4HI GCNGC 5 cut(s) 19, 396, 567, 647, 890
FspBI CTAG 4 cut(s) 69, 317, 510, 906
GlaI GCGC 1 cut(s) 888
GluI GCNGC 5 cut(s) 19, 396, 567, 647, 890
HaeIII GGCC 3 cut(s) 207, 467, 646
HapII CCGG 1 cut(s) 358
HhaI GCGC 1 cut(s) 889
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 3 cut(s) 108, 165, 725
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HincII GTYRAC 3 cut(s) 202, 340, 544
HindII GTYRAC 3 cut(s) 202, 340, 544
HinfI GANTC 5 cut(s) 179, 425, 521, 709, 718
HpaI GTTAAC 1 cut(s) 544
HpaII CCGG 1 cut(s) 358
HphI GGTGA 3 cut(s) 604, 610, 694
Hpy166II GTNNAC 5 cut(s) 202, 340, 346, 490, 544
Hpy188I TCNGA 4 cut(s) 151, 520, 551, 708
Hpy188III TCNNGA 6 cut(s) 307, 317, 358, 487, 722, 787
Hpy8I GTNNAC 5 cut(s) 202, 340, 346, 490, 544
Hpy99I CGWCG 7 cut(s) 203, 206, 341, 344, 551, 584, 587
HpyAV CCTTC 3 cut(s) 40, 323, 824
HpyCH4III ACNGT 5 cut(s) 56, 324, 539, 598, 604
HpyCH4IV ACGT 5 cut(s) 342, 444, 546, 582, 662
HpyCH4V TGCA 4 cut(s) 108, 229, 632, 846
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 213, 404, 884
HpyF3I CTNAG 4 cut(s) 73, 129, 429, 480
HpySE526I ACGT 5 cut(s) 342, 444, 546, 582, 662
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 3 cut(s) 108, 165, 725
HspAI GCGC 1 cut(s) 887
Kpn2I TCCGGA 1 cut(s) 357
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 3 cut(s) 110, 123, 483
LmnI GCTCC 3 cut(s) 159, 360, 368
LpnPI CCDG 7 cut(s) 73, 100, 221, 230, 299, 371, 575
Lsp1109I GCAGC 1 cut(s) 876
LweI GCATC 1 cut(s) 360
MabI ACCWGGT 1 cut(s) 86
MaeI CTAG 4 cut(s) 69, 317, 510, 906
MaeII ACGT 5 cut(s) 342, 444, 546, 582, 662
MaeIII GTNAC 3 cut(s) 80, 592, 598
MalI GATC 3 cut(s) 112, 125, 485
MbiI CCGCTC 1 cut(s) 21
MboI GATC 3 cut(s) 110, 123, 483
MboII GAAGA 8 cut(s) 92, 242, 346, 427, 697, 778, 791, 811
MhlI GDGCHC 3 cut(s) 156, 365, 564
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 3 cut(s) 627, 812, 834
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 434, 530
MmeI TCCRAC 1 cut(s) 529
Mox20I TGGCCA 1 cut(s) 467
MroI TCCGGA 1 cut(s) 357
MscI TGGCCA 1 cut(s) 467
MseI TTAA 4 cut(s) 543, 621, 744, 873
MslI CAYNNNNRTG 2 cut(s) 473, 665
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 4 cut(s) 15, 213, 404, 884
NdeII GATC 3 cut(s) 110, 123, 483
NlaIII CATG 3 cut(s) 108, 165, 725
NmuCI GTSAC 3 cut(s) 80, 592, 598
PagI TCATGA 1 cut(s) 721
PfeI GAWTC 3 cut(s) 179, 709, 718
PflFI GACNNNGTC 1 cut(s) 604
PkrI GCNGC 5 cut(s) 20, 397, 568, 648, 891
PleI GAGTC 2 cut(s) 433, 529
PmaCI CACGTG 1 cut(s) 663
PmlI CACGTG 1 cut(s) 663
PpsI GAGTC 2 cut(s) 433, 529
Ppu21I YACGTR 2 cut(s) 445, 663
Psp124BI GAGCTC 3 cut(s) 156, 365, 564
Psp6I CCWGG 1 cut(s) 86
PspCI CACGTG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 86
PspPI GGNCC 3 cut(s) 139, 165, 644
PsyI GACNNNGTC 1 cut(s) 604
RsaI GTAC 3 cut(s) 347, 443, 508
RsaNI GTAC 3 cut(s) 346, 442, 507
RseI CAYNNNNRTG 2 cut(s) 473, 665
SacI GAGCTC 3 cut(s) 156, 365, 564
SalI GTCGAC 2 cut(s) 200, 338
SaqAI TTAA 4 cut(s) 543, 621, 744, 873
SatI GCNGC 5 cut(s) 19, 396, 567, 647, 890
Sau3AI GATC 3 cut(s) 110, 123, 483
Sau96I GGNCC 3 cut(s) 139, 165, 644
SchI GAGTC 2 cut(s) 434, 530
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 3 cut(s) 156, 365, 564
SexAI ACCWGGT 1 cut(s) 86
SfaNI GCATC 1 cut(s) 360
SgrDI CGTCGACG 2 cut(s) 200, 338
SinI GGWCC 2 cut(s) 139, 165
SmiMI CAYNNNNRTG 2 cut(s) 473, 665
SmlI CTYRAG 3 cut(s) 134, 377, 399
SmoI CTYRAG 3 cut(s) 134, 377, 399
Sse9I AATT 3 cut(s) 627, 812, 834
SsiI CCGC 8 cut(s) 16, 19, 214, 283, 331, 395, 567, 647
SspMI CTAG 4 cut(s) 69, 317, 510, 906
SstI GAGCTC 3 cut(s) 156, 365, 564
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 5 cut(s) 56, 324, 539, 598, 604
TaiI ACGT 5 cut(s) 345, 447, 549, 585, 665
TaqI TCGA 3 cut(s) 201, 306, 339
TasI AATT 3 cut(s) 627, 812, 834
TatI WGTACW 1 cut(s) 506
TauI GCSGC 4 cut(s) 21, 398, 569, 649
TfiI GAWTC 3 cut(s) 179, 709, 718
Tru1I TTAA 4 cut(s) 543, 621, 744, 873
Tru9I TTAA 4 cut(s) 543, 621, 744, 873
TscAI CASTG 3 cut(s) 239, 544, 853
TseFI GTSAC 3 cut(s) 80, 592, 598
TseI GCWGC 1 cut(s) 889
Tsp45I GTSAC 3 cut(s) 80, 592, 598
TspDTI ATGAA 3 cut(s) 683, 710, 792
TspGWI ACGGA 4 cut(s) 48, 236, 355, 639
TspRI CASTG 3 cut(s) 239, 544, 853
Tth111I GACNNNGTC 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 139, 165
XbaI TCTAGA 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 201, 339
XspI CTAG 4 cut(s) 69, 317, 510, 906
ZraI GACGTC 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.